transcript:BL74331_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL74331_cuf0
Unique Nametranscript:BL74331_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL74331_cuf0

>transcript:BL74331_cuf0-protein ID=transcript:BL74331_cuf0-protein|Name=transcript:BL74331_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=128bp
MSFSMSRQQELICGLSLAVTIAVLPRLDMDELIFELSRRIQNLEKENSIK
EKLVSILRDVILEEYRQLERESEVSSPDEMTIPEQEQETVPIQENVPTLN
AETMSTNTSSXSVGKRVRSQFPKRNDHT
Run BLAST on NCBI

mRNA from alignment at Sc0000526:42190..43157-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL74331_cuf0 ID=transcript:BL74331_cuf0|Name=transcript:BL74331_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=968bp|location=Sequence derived from alignment at Sc0000526:42190..43157- (Branchiostoma lanceolatum)
GTCGCGTGTAAAGCAGTACATTGATTGGAATTATTCTGTTAGTAATTACA
ATCGGACCATTATAAAATTATGGCATTTAAACACTAGAGTGGAGAAAGGT
TGAATGTGAACCTTTGCAGATGTTAATTCAATGAGGAATAGGGTATATTA
CTGTGAGCAGAAGAGTAGCATTGTCCTTTCCGACAATAAGGTATGATGTA
TATTTCATAACACTTGATTGATAATATTTGTTCAAGTACAAATATCATGT
CCTTCAGCATGTCCAGACAACAGGAGTTAATCTGTGGCCTCTCGCTCGCG
GTGACCATAGCAGTCCTCCCCAGACTGGACATGGATGAGCTGATATTTGA
ACTCAGTAGGAGGATTCAAAACCTGGAGAAAGAGAACAGTATCAAGGAGA
AGTTGGTTAGTATCCTTCGGGATGTGATATTGGAGGAATATCGTCAGTTG
GAAAGAGAGTCAGAAGTCAGTTCCCCAGACGAAATGACCATACCTGAACA
AGAACAGGAGACAGTTCCCATTCAAGAGAACGTTCCAACCTTGAACGCTG
AAACAATGTCAACAAACACTTCAAGTNCGTCAGTTGGAAAGAGAGTCAGA
AGTCAGTTCCCCAAACGAAATGACCATACCTGAACAAGAACAGGAGACAG
TTCCCATTCAAGAGAACGTTCCAACCTTGAACGCTGAAACAATGTCAACA
AAGACTTCAAGTCCTGAGGCCTCTCTACAAAGTCCTGAAATGGACGTTGG
GCGTCGACATGAACGAAGTAAAAAAGATAAAAGCGAGGAAACACCTTCGA
CAACGTCTCAACCGACTCCAGACCAGGCTTGTGACAACATGGCGTTCATT
CTTTCAGACAATAACTTTCGTATCGATGTCGAACGCTACGTGTGTGACGT
TTGTGGATTCAAAAACATGAACGCACATACTTTCTCCAAGCATAAGCAAT
GTCACAAAGGAAAAAAAC

Coding sequence (CDS) from alignment at Sc0000526:42190..43157-

>transcript:BL74331_cuf0 ID=transcript:BL74331_cuf0|Name=transcript:BL74331_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=387bp|location=Sequence derived from alignment at Sc0000526:42190..43157- (Branchiostoma lanceolatum)
ATGTCCTTCAGCATGTCCAGACAACAGGAGTTAATCTGTGGCCTCTCGCT
CGCGGTGACCATAGCAGTCCTCCCCAGACTGGACATGGATGAGCTGATAT
TTGAACTCAGTAGGAGGATTCAAAACCTGGAGAAAGAGAACAGTATCAAG
GAGAAGTTGGTTAGTATCCTTCGGGATGTGATATTGGAGGAATATCGTCA
GTTGGAAAGAGAGTCAGAAGTCAGTTCCCCAGACGAAATGACCATACCTG
AACAAGAACAGGAGACAGTTCCCATTCAAGAGAACGTTCCAACCTTGAAC
GCTGAAACAATGTCAACAAACACTTCAAGTNCGTCAGTTGGAAAGAGAGT
CAGAAGTCAGTTCCCCAAACGAAATGACCATACCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL74331gene:BL74331Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL74331_cuf0-E1BL74331_cuf0-E1-1564476830-478351Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL74331_cuf0transcript:BL74331_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000526genomeSc0000526:42190..43157 -
Properties
Property NameValue
Transcript idBL74331_cuf0
Biotypeprotein_coding