|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL76027_cuf2 >transcript:BL76027_cuf2-protein ID=transcript:BL76027_cuf2-protein|Name=transcript:BL76027_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=101bp
AKMARSMTNVREGAVMLPPSPNWFFGGVADATKGGLFAFCAKNSVYLLDM
TRTIPCVTGCLPCACARVTGCVFSLNPGQERLCVTSGDNGVVQVWDIDSL
T Run BLAST on NCBI mRNA from alignment at Sc0000928:5483..10532- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL76027_cuf2 ID=transcript:BL76027_cuf2|Name=transcript:BL76027_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=5050bp|location=Sequence derived from alignment at Sc0000928:5483..10532- (Branchiostoma lanceolatum)
TGCAAAGATGGCGCGCTCCATGACCAATGTGAGGGAGGGTGCTGTCATGC
TACCACCCTCTCCAAATTGGTTTTTCGGCGGTGTAGCAGATGCCACTAAG
GGCGGATTGTTTGCTTTTTGTGCTAAGAATTCTGTCTACCTTCTAGATAT
GACAAGAACAATCCCATGTGTTACAGGTAAGAGTATAACTCTGTTCACAG
TTCATGACGCTATAGCACAGTGCTCGGGGAGGTCGGATATATGTCGTGTT
GGTAACGGAATAATACCAGATTTCTGTCGGGTTTTCACTGCAGCTTTTAC
CGATGTTGGACCCGACACAGATCCAGAAATTAGGCCAAATCAATGGAGTT
CGCCCGATGCTTTCCCGATAGTCTTCGTATAGGCCACTCTGCAACAACGT
AGACACATTGCCCGCCTCACTCTTATGTACAAGGCAGTCCACAATCTGAT
GGCAATTTGCCATACCCACCGCACACATACTCACTTCAACACCAACAGCA
CCAGAGGTCACTCACAGCGATTCATTACACTTCCATGCAAAACAGAAATA
CATCGCAGCAGCTACTTCCCCAGAACGGTAATCGACTGGAACAACCTACC
CCAACACCTCATCAATTCAACATCGGTAGCCAGTTTCAAATCTGGGTTGG
CCAAGTCACAACATTTAGTCATAGAGAGAGTCAGGACAACACCCACTGTA
GCCACATGTATATAGCACCATTTGTTTAATACCCACTTATTTAAATATTT
ATTGTTGCGCCAATTTTGTTTATTTTTTTCGGATTTTCACCACCACCGCT
GCAGCTGCGCCAGATCTCACGCCCGGGTGAATGATGTAAATCACCGTGTG
GCTAATACGAGACGGAGGTTCGCCAGGCCTCCACCCGGGTGATTTGTAGT
GAATCACCAACTCCAGATAGAAGGATTTGGACCATCGAACACCGGGGCAT
GCCCCTACTCTTTTTCGAAAGGTGTGGTGGGTTCTTTTACGTGCGCGGGG
TGTGGCTCTCNTTTGGACCATCGCACACCGGGGCATGCCCCTACTCTTTT
TCGAAAGGTGTGGTGGGTTCTTTAACGTGCGCGGGGTGTGGCTCTCCCCA
AACACGGGACCTCCATTTAACGTCCTATCCGAGGGACGTCCCTAACCCTA
GAAGAGCTAGGTACTCATTTACACCTGAGTGAAGTGAGGATAGTCGTGTT
AAGTGCCTTTCCCAAGGGCACAACGTCGGGGCGCAAGTTCGGACATGTCT
CTGGGCGCACCTGGGATTAGATCCCGGGACCCTTTGTTTGACAGCCGCGT
GTTCTACAGTTGCGCCACACGACGCCACTAATTTATCATCCAGATAAAAC
TTTCCCACTGCAAGTTCTGACGGCTTTTGGAAAAACAACACGTTGATCAC
GCCCTCAACGCAGAACAGAGGGTGCCGCCGTCCATCATTATCCTAGCAAC
CGCCAGTCCATAGCAACCGTTTGCCAGCCTGGCGCTGTCCCTGGCTGTTT
TGAAAAGTGCGTGTGATGTTTACATACATTTACCGTATTTAGATGGTCGG
GCGAGGCCTGAATCACGTGCGTGATCTGAAGCTTAAATACAGTTCTATGG
ACAGGTAATAGTGTACAGGTGTTTTGTGAGGTCACGTGAACTGTTCCCAA
CCAGGTGTCGCCTCTTAAGGACGCGAAACCTGGTCAGGAGCGCCCGAGTG
TCTGACTTAGAATACTAGTAGTATTGAGAAAACACGCCAGCCTCGCAACC
CGGAAGTTCACACTCAGGCCGTACATTATTTTCTTCGTTCCTTTCACAAA
CTAACTTGACAACTAACCATTACATGATGTTTTGCATATCGTACATGTAA
ATTTCATGGAACTTTTCAACACTATATTACTGTACATATTTTTTTTTTAC
ATTTCTGGCAGAAATTACCGTAAAATTCCTATTTACGTACGCACCCCTCC
TAACGTACGCACCCCCGATTTGGGGACGATTGCGGGCCTGACTCAGTGAG
TTGAAACGTTCAGGGGAAAAACCCTCCTAACGTACGCACCCCCTCTCCAG
CATTTCGGTGGATAGTTAAAGAGGTTGACATGAATGATCATCCTTCCGAT
GATGTTTACCACCTTAAAGGTACCAGTGTTCTCGCCAGGTTTTTTTCACA
GCATCGGGGCAGGGGTTCGGGGGCTGCCTAAAGCCTGCGACGGCGTCCAG
GGGCAGAGCCCCGGTGGGGGGAAGCTCTTGCATTTTAGGCTATTGAGAAG
GCTTTTTTTCAGTTTTGAGGGTCATATTTATGATAATCGTGGCAGTCAAT
CAACTTCTCCACATGACCTTGACATACAATATTTCTGGTGAAAGACAACT
TGAAACTCAGAAACAACAATATCAATAGTTTATTTAGCTACTCAACAATA
TCAATAGTCGATACCAGTTTTCCTTTTTTTGGCTGTGTCCGGCTGTCCTT
AGTCGAAGCGCAACAATCGTAGCTGTCATCAGAAGTTCTCTTCGGTGCGA
AATAGGAAGCGATATTCCTGGTATACTACGCTTCAACGCAGGGATGTTCC
CAGAAAAATCGCCGCCGAGGCGATTTTCCCTCGGCGGTCGGCGGCGAAAG
TCCTAATACAAAAGTCCCTTGCCGCGGCATTTAAAGAACCTTGGCCCGTC
TAAGAAATCGCGTCACCCCCCTCCCCCAAATATATAGGCCGCCGGCCCGT
TCCAGGAAGCCGAAACCGCTGTTCCGCGTCTTACAGATAACGTGGAACTT
CCGTTTAATAAAAACTTTGTACAAGCATCGCTGTGGGAAAGTCATGGAAC
GTAACGTCACCAGAGGTTCGCTGTTTAGCCTCCTTGCACGTACGGAGATC
CAACTCGCGCGTTTTCCCACAAAGTTGCCGCTGATTGACAGTCGGCAGCC
TTTGATGACAGTCGCGACCATGGCGACGTCGGCGGCAGAAAGTCTACTAA
AAGGAAAGTCGGCAGTTTGTGGGCGTTGCCACAAATTTGCAGTAGCCGAA
TTGTCCAATCATGGCGAAGCTTATAAATAAGTTGAAACTTTATCTTCCTC
TCTTTGTAAAAATGAATTTTCTGGGCATTAATTCGCTGTTATGGATGGGA
AAATGACGTAACCTTGCTCTAGAAATTTGTCAGAAATACNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAATAGTATTGAGAAAACACGCCAGCCTCGCAAC
CCGGAAGTTCACACTCAGGCCGTACATTATTTTCTTCGTTCCTTTCACAA
ACTAACTTGACAACTAACCATTACATGATGTTTTGCATATCGTACATCTA
AATTTCATGGAACTTTTCAACACTATATTACTGTACATATTTTTTTAAAA
CATTTCTGGCAGAAATTAACGTCATATCAGATCTCCTTCATGTAGCTCAC
TTATTTCAATTCAATGACTTACGGAATAGCAAGTGCTCTGCGAAAAGTGA
AATTTTGTACAATTCGATATAATGTAACACAAAATTTCTAAAATAATTGC
GACCTTCACGGAGTGGGGAATGCGAGCACTGAGTAGCAGCTCAAGTCGGA
CAACATGTTACAAAACGTAAAGAATCCGGGTATGACAGCATATGCGTTTA
GAACATCTTAAAAGCGGGGCGTTGTTTCTCCGCCCACCGCGCGGGCGGAA
GATTGCTGGACGTCTCACGAAACTTGATGCGTATCTCGTGGCCTGTTAGC
TATATGATAAAAGACTTTTAAAAGGCATATACTGGTCGGGACATTTCAAC
TGTTGCGTTGGCCCAGAGAAGGGATCCGTACTTTATTCGGGTTTTTGCAT
TTTACGTTTCAGGACCGCAGATTTGCCCATAACTTTGCCCGAACCAGGGA
TGCATACTTTAATTGGGGTGCGTACTTTAATCAAGAAATCCAACATGGCT
CGTACGACATCAAATGAATAGCCTGTATAGATAAATGTGTTAAAAATTGA
TTGTTTTCCATGGCTTCCCTATGTGTTCCAATGGAAAGTCCATTTACTGG
TCCCTCCCCATGCCACCACTAACATTTGTCTCTGCTATGGTCTGTAGGCT
GCCTACCCTGTGCCTGTGCTCGGGTAACAGGATGTGTCTTCAGTCTGAAT
CCAGGCCAAGAGAGACTGTGTGTAACCAGTGGAGACAATGGTGTGGTACA
GGTGTGGGACACTGACTCACTCACCTGTCTCCATACCCAGGGACAACACA
GGGTACGTAGTGCAGATGTAGAACAGGTGTGGTACAGGTGTGGGACACTG
ACTCACTCACCTGTCTCCATACCCAGGGACAACACATGCAGGATACATAG
TACAGATGTAGTACAGGTGTGGGACATTGACTCACTCACCTGACTCCATA
CCCAGGGATAATACAGGGTACTTATTATTAGTACAGATGTAGAACAGGTG
TGGGACATTGACTCACTCACCTGACTCCATACCCAGGGACAATACAGGGT
ACTTAGTACCGATGTAGAACAGGTGTGGGACACAGACTCACTTGCCTGTC
CAATGGTTCTATGTTTTTCCCTGCATGTTAAGAAATTTGTAGTCATCCAG
TGCTACAAGCATGTTTCAGGATGCTTTTATTGGGATGGGATACAGAATCC
TGTTGACACGTTGAATGAAGTATGACGTTCCAGACTGTAATGTGGTGATA
TCTCCACTAACTGTTGGTCCCAGAGTCTAGTTGCAGCCGTGCTGTGGTCC
TCAGCAGATGAGAACACCATTGTGTCAGCTGACCAGAAAGGCTTCATTGT
GAAGTGGAACTACCAAACAGGAGATGTCCAAACCTTCTGTCCTGATCCCA
AAGGACACATTGTCAGTTTGGCATGTTCCTCACATCAACCATACCATCTG
GCAGCAGGGTATGTATTGGAACAACAAGTACAAATTCTATGTATAATCAT
GTACATGTAGTTGTATCTACTAGTATGGGTTCTGATATTTAAAAGTCTTA
TCATATATACTCTCATCTCCCAAATAAACATACCCCCCGGAATAAACATA
CCCCCCAGACAAATTTTCAAAATCTAATAAACGTACCCCCCGGAATAAAC
Coding sequence (CDS) from alignment at Sc0000928:5483..10532- >transcript:BL76027_cuf2 ID=transcript:BL76027_cuf2|Name=transcript:BL76027_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=918bp|location=Sequence derived from alignment at Sc0000928:5483..10532- (Branchiostoma lanceolatum)
GCAAAGATGGCGCGCTCCATGACCAATGTGAGGGAGGGTGCTGTCATGCT
ACCACCCTCTCCAAATTGGTTTTTCGGCGGTGTAGCAGATGCCACTAAGG
GCGGATTGTTTGCTTTTTGTGCTAAGAATTCTGTCTACCTTCTAGATATG
ACAAGAACAATCCCATGTGTTACAGGCTGCCTACCCTGTGCCTGTGCTCG
GGTAACAGGATGTGTCTTCAGTCTGAATCCAGGCCAAGAGAGACTGTGTG
TAACCAGTGGAGACAATGGTGTGGTACAGGTGTGGGACATTGACTCACTC
ACCTGAGCAAAGATGGCGCGCTCCATGACCAATGTGAGGGAGGGTGCTGT
CATGCTACCACCCTCTCCAAATTGGTTTTTCGGCGGTGTAGCAGATGCCA
CTAAGGGCGGATTGTTTGCTTTTTGTGCTAAGAATTCTGTCTACCTTCTA
GATATGACAAGAACAATCCCATGTGTTACAGGCTGCCTACCCTGTGCCTG
TGCTCGGGTAACAGGATGTGTCTTCAGTCTGAATCCAGGCCAAGAGAGAC
TGTGTGTAACCAGTGGAGACAATGGTGTGGTACAGGTGTGGGACATTGAC
TCACTCACCTGAGCAAAGATGGCGCGCTCCATGACCAATGTGAGGGAGGG
TGCTGTCATGCTACCACCCTCTCCAAATTGGTTTTTCGGCGGTGTAGCAG
ATGCCACTAAGGGCGGATTGTTTGCTTTTTGTGCTAAGAATTCTGTCTAC
CTTCTAGATATGACAAGAACAATCCCATGTGTTACAGGCTGCCTACCCTG
TGCCTGTGCTCGGGTAACAGGATGTGTCTTCAGTCTGAATCCAGGCCAAG
AGAGACTGTGTGTAACCAGTGGAGACAATGGTGTGGTACAGGTGTGGGAC
ATTGACTCACTCACCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000928 | genome | Sc0000928:5483..10532 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL76027_cuf2 |
| Biotype | protein_coding |
|
