transcript:BL78109_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL78109_cuf0
Unique Nametranscript:BL78109_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL78109_cuf0

>transcript:BL78109_cuf0-protein ID=transcript:BL78109_cuf0-protein|Name=transcript:BL78109_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=106bp
PGLWRFCRLRQNGRGAATTATAAEQAAPEEAVRPFEEIPGPKGLPFIGTA
LDYSPFGTYNTIYKLYRRGISLRTVTTKLSSIFSHIRCVEVQLYAKISSP
EQERTV
Run BLAST on NCBI

mRNA from alignment at xfSc0007899:730..1229-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL78109_cuf0 ID=transcript:BL78109_cuf0|Name=transcript:BL78109_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=500bp|location=Sequence derived from alignment at xfSc0007899:730..1229- (Branchiostoma lanceolatum)
CCCGGGTCTGTGGAGGTTTTGCCGACTGCGCCAGAACGGCCGGGGGGCCG
CCACCACAGCCACTGCGGCCGAACAGGCCGCCCCAGAGGAGGCAGTCCGG
CCGTTTGAGGAGATTCCCGGCCCGAAGGGGCTCCCTTTCATCGGCACAGC
GTTGGACTACAGTCCGTTTGGTACGTACAACACTATCTACAAACTGTATC
GGAGGGGTATAAGTCTTCGTACAGTTACGACAAAGCTGTCGTCAATTTTC
AGTCACATACGGTGTGTGGAGGTGCAATTATATGCAAAAATCAGTTCTCC
TGAGCAAGAAAGAACCGTGTAAGTATGACCCTTGGTCTTGTCTCTTGTCT
ATGCAAAGCATTGGAATAAATTTGCACTTTTGAAGAGCAGTAAACTCCAG
AAAGTCAGTGATAGTTACCTGCAAGCGTCACGCATGGTGTACTTCATATG
GGTAATTCGACACTGTGCCCTCTGCCCTGCTGTAGTTGCAACACATAAAC

Coding sequence (CDS) from alignment at xfSc0007899:730..1229-

>transcript:BL78109_cuf0 ID=transcript:BL78109_cuf0|Name=transcript:BL78109_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=321bp|location=Sequence derived from alignment at xfSc0007899:730..1229- (Branchiostoma lanceolatum)
CCGGGTCTGTGGAGGTTTTGCCGACTGCGCCAGAACGGCCGGGGGGCCGC
CACCACAGCCACTGCGGCCGAACAGGCCGCCCCAGAGGAGGCAGTCCGGC
CGTTTGAGGAGATTCCCGGCCCGAAGGGGCTCCCTTTCATCGGCACAGCG
TTGGACTACAGTCCGTTTGGTACGTACAACACTATCTACAAACTGTATCG
GAGGGGTATAAGTCTTCGTACAGTTACGACAAAGCTGTCGTCAATTTTCA
GTCACATACGGTGTGTGGAGGTGCAATTATATGCAAAAATCAGTTCTCCT
GAGCAAGAAAGAACCGTGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL78109gene:BL78109Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL78109_cuf0-E1BL78109_cuf0-E1-1564476830-538442Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL78109_cuf0transcript:BL78109_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0007899genomexfSc0007899:730..1229 -
Properties
Property NameValue
Transcript idBL78109_cuf0
Biotypeprotein_coding