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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78683_cuf0 >transcript:BL78683_cuf0-protein ID=transcript:BL78683_cuf0-protein|Name=transcript:BL78683_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=153bp
MSATATPIPSLSPEAEDLPLFSLSQVYVLNIQGWVILLSVLVGLAIVGCL
ILVIVFIVQDFTSLQNQDDDDTSSSSSSSDSDSSSSSSSSSSSSSSSSSS
PSSSSSSGEIDKKEWRKFSRKQTQKHLEAQMQLARMNSIRRMHAQALVLD
DSD Run BLAST on NCBI mRNA from alignment at Sc0000435:135408..137725+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78683_cuf0 ID=transcript:BL78683_cuf0|Name=transcript:BL78683_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2318bp|location=Sequence derived from alignment at Sc0000435:135408..137725+ (Branchiostoma lanceolatum)
CTTAACCTTTACACGGAAGACTGGTTTGAAAGAAGACAATGCTGGCATAT
CATTGCTCCCGAGAGAGCGTTATCGTCTGCATCTTTCGAAAACTATACTT
TCATATGCACGTCTTAGTGAATCTATCTATTCTCTTTGTTGGATGGTATA
CAGGAAAACTGAGTTTAGTGACAGTATCTGTGTGACAGTCGTAAAGGTAT
ATGCTGTCTCGGTGGAATAACGTTGTTGGAGGAAGGACAGCATAGATGCA
GTCGCGAAGGAAATGTCTGCTACCGCGACTCCCATCCCCTCCCTCTCTCC
AGAAGCAGGTATTTGTGATTTTCGTTCTGGATTGTCGATATCAATGCTGT
TGTTTGTAACTTTGTTGCAGTAGTTTAGGCTGTTTATGTCGAGATGTTGT
AAATAACAACAGATTGCCTAATTTTGTCATATCCCATTTCAAAAGTTACT
ACATGGAAACGTCGAGTGACACACATAACGTTATATAAACAAACCTTTTG
AGATGCGAATGTAGAAGCGTCACAGTGGCGCACCAAGCGTAAGTGAGCCG
TTGCTTCCTTATACAAAAAAAATAACTTGAGAGGTTCAGTTTTACTTCTA
GTCATAACCATGCCACAGTATCAATTCTCGGCCGTGATGGGTAAAACCAC
AAGTCGGTCCCATAGTCGGTTGCAGTTACATGTATGAATTGAAATACGCT
GATGTCATTTGTCAGATGATTAAATTTGCTGACATGACTAATCTTCCTAC
AGAAGACCTGCCGCTGTTCAGCCTGTCCCAGGTGTACGTGCTGAACATCC
AAGGCTGGGTCATCTTACTCTCCGTGCTGGTAGGGCNTCCCAGGTGTACG
TGCTGAACATCCAAGGCTGGGTCATCCTACTCTCCGTGCTGGTAGGGCTG
GCCATCGTTGGCTGCCTGATTCTTGTCATCGTCTTCATTGTACAAGACTT
CACAAGGTACTTGCGTTTTATTTACTGTATAGCGTTATGGGGTGGGGTGT
CAATAACATAGTAGTTAATGTCGATGCCATGCATGCATGACCCACTGGCA
TTTTGAGCATGTTGGAGAAAATGTCATGCGGACGCCAACGGCTATTAACA
ATCATGACATAAAGGTCCTTCATCATCTGTCCTGACGTTTATAAAGATTG
CATACAAATCTACGAGCCCGCAAGGAACATTGGCATGTTATAACAAAGAC
TCTAGTTCTATGCTAGTTGTTCCGACTGATGATACTGATATCTAAATGGT
TTTGGAACTGTAAGCAAAAAGATGGTCTCTCAACGCTTGTCTCATATCAT
CCTATCAGCTTACAGAATCAAGACGATGATGACACATCCAGCTCCAGCTC
GTCTTCAGACTCTGATTCATCCTCTTCCTCCTCATCTTCTTCATCATCGT
CATCCTCCTCATCGTCGTCACCATCCTCAAGTAGTTCAAGTGGAGAGATA
GACAAGAAGGAGTGGCGCAAGTTTAGTAGAAAACAAACACAGAAGCATCT
GGAAGCACAGATGCAGCTCGCGAGAATGAACTCCATCAGACGGATGCACG
CTCAAGCTCTTGTTTTGGACGATTCGGACTAGTATGCATATGAGGAAGCG
TCAGTATCAGTATCAAAAGTTTTTGAAATGAAGATTTCGGCTTAGATTAT
TGCATCATTTTGTCGCTGCATTACTATTTAATACTGCTTTACGCCTAAAC
ATGACGTGTGTCGTTGTTTCTACACATCTCAGATTGTATGTCTTGTACAT
GTAGTTACCACAGATTCTCGGATAGAATCTTGGTGAAAGTAAGCAAAGAA
ACTTAACAATGAGTCTTTTTTGTTCTTCCCGGGTAATGCACAATTGCATG
CATCACATTGAGTTGACCTTTGCAGCAAAGAATTTTTCAATATGCTAACT
TTTAAGTTAAAAATGATATAGAAAACGAGTGTCATTTTATTGTTGACTGT
ACATTATAACACAATTTTCGACAAGATAAGTTGGCGAGTTTTCTATATGT
GAATAGCACAAAAAAATTAAATTCCGTATGCCATTAGATTACCCATTTAT
TTAAAGCTCCATCTGTCCTTACACTTGTATATACTAGTACATATTAGCAT
AGTAAGATATCAAATTCCTGCATAAATAATTATACAGTACTTAGTACTAT
CATCTTGACCTGTACTTAGCTTATAAGAGTATAAACGTACAATAAATTCT
ACCATTCATTCATTAAAATTTAAACCACTACTGATTTACCCCGCTCTTAT
TGAAGAAAGATCACATGTACGTTATCTTTAAAATTTGCGTTAACGACATG
CTTCAATAAAAGATTGAG Coding sequence (CDS) from alignment at Sc0000435:135408..137725+ >transcript:BL78683_cuf0 ID=transcript:BL78683_cuf0|Name=transcript:BL78683_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1848bp|location=Sequence derived from alignment at Sc0000435:135408..137725+ (Branchiostoma lanceolatum)
ATGTCTGCTACCGCGACTCCCATCCCCTCCCTCTCTCCAGAAGCAGAAGA
CCTGCCGCTGTTCAGCCTGTCCCAGGTGTACGTGCTGAACATCCAAGGCT
GGGTCATCCTACTCTCCGTGCTGGTAGGGCTGGCCATCGTTGGCTGCCTG
ATTCTTGTCATCGTCTTCATTGTACAAGACTTCACAAGCTTACAGAATCA
AGACGATGATGACACATCCAGCTCCAGCTCGTCTTCAGACTCTGATTCAT
CCTCTTCCTCCTCATCTTCTTCATCATCGTCATCCTCCTCATCGTCGTCA
CCATCCTCAAGTAGTTCAAGTGGAGAGATAGACAAGAAGGAGTGGCGCAA
GTTTAGTAGAAAACAAACACAGAAGCATCTGGAAGCACAGATGCAGCTCG
CGAGAATGAACTCCATCAGACGGATGCACGCTCAAGCTCTTGTTTTGGAC
GATTCGGACTAGATGTCTGCTACCGCGACTCCCATCCCCTCCCTCTCTCC
AGAAGCAGAAGACCTGCCGCTGTTCAGCCTGTCCCAGGTGTACGTGCTGA
ACATCCAAGGCTGGGTCATCCTACTCTCCGTGCTGGTAGGGCTGGCCATC
GTTGGCTGCCTGATTCTTGTCATCGTCTTCATTGTACAAGACTTCACAAG
CTTACAGAATCAAGACGATGATGACACATCCAGCTCCAGCTCGTCTTCAG
ACTCTGATTCATCCTCTTCCTCCTCATCTTCTTCATCATCGTCATCCTCC
TCATCGTCGTCACCATCCTCAAGTAGTTCAAGTGGAGAGATAGACAAGAA
GGAGTGGCGCAAGTTTAGTAGAAAACAAACACAGAAGCATCTGGAAGCAC
AGATGCAGCTCGCGAGAATGAACTCCATCAGACGGATGCACGCTCAAGCT
CTTGTTTTGGACGATTCGGACTAGATGTCTGCTACCGCGACTCCCATCCC
CTCCCTCTCTCCAGAAGCAGAAGACCTGCCGCTGTTCAGCCTGTCCCAGG
TGTACGTGCTGAACATCCAAGGCTGGGTCATCCTACTCTCCGTGCTGGTA
GGGCTGGCCATCGTTGGCTGCCTGATTCTTGTCATCGTCTTCATTGTACA
AGACTTCACAAGCTTACAGAATCAAGACGATGATGACACATCCAGCTCCA
GCTCGTCTTCAGACTCTGATTCATCCTCTTCCTCCTCATCTTCTTCATCA
TCGTCATCCTCCTCATCGTCGTCACCATCCTCAAGTAGTTCAAGTGGAGA
GATAGACAAGAAGGAGTGGCGCAAGTTTAGTAGAAAACAAACACAGAAGC
ATCTGGAAGCACAGATGCAGCTCGCGAGAATGAACTCCATCAGACGGATG
CACGCTCAAGCTCTTGTTTTGGACGATTCGGACTAGATGTCTGCTACCGC
GACTCCCATCCCCTCCCTCTCTCCAGAAGCAGAAGACCTGCCGCTGTTCA
GCCTGTCCCAGGTGTACGTGCTGAACATCCAAGGCTGGGTCATCCTACTC
TCCGTGCTGGTAGGGCTGGCCATCGTTGGCTGCCTGATTCTTGTCATCGT
CTTCATTGTACAAGACTTCACAAGCTTACAGAATCAAGACGATGATGACA
CATCCAGCTCCAGCTCGTCTTCAGACTCTGATTCATCCTCTTCCTCCTCA
TCTTCTTCATCATCGTCATCCTCCTCATCGTCGTCACCATCCTCAAGTAG
TTCAAGTGGAGAGATAGACAAGAAGGAGTGGCGCAAGTTTAGTAGAAAAC
AAACACAGAAGCATCTGGAAGCACAGATGCAGCTCGCGAGAATGAACTCC
ATCAGACGGATGCACGCTCAAGCTCTTGTTTTGGACGATTCGGACTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000435 | genome | Sc0000435:135408..137725 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78683_cuf0 |
| Biotype | protein_coding |
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