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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78710_cuf2 >transcript:BL78710_cuf2-protein ID=transcript:BL78710_cuf2-protein|Name=transcript:BL78710_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=679bp
PFDATVAKVNIQYLVNMASNAISDITDEFLVCQVCLEDFRQPKMLPCLHT
FCQPCLERLLATEPVGKLDCPTCRQDVPLPRNGVQGLRSNFLVGKLRDIL
QQQPKGETSEAREDGVSCTACEVGNSAQLYCVECTDYLCQTCNDTHRRFK
ATKSHTVVTLQDLQSGQAAAEFRARETSKCEDHHEVNKFYCDTCHWVICL
HCVVTAHNDHQYVEIEKAAEREGAKIKAKLATVKNTADLHEKWIQLLQLV
KDGWSSQLQRTEELIRKQVNSIIEAAKKVENDRIGQLRAMNAARERQMEA
AMEAAEMDLASARSCVLFTDNVLEYGSPAEVMSVAGELTGRLDQTAEDKN
TENSELTKNFVTLTFDPPAGELERDVAKLVGGINQVRTPLDPPQITHVRP
NVVIGNGGASLELVETVGEPGSGDGQLHYPISLAVTAKGEIVVTDCDNSR
LQFLDKDGSFQRNFDLGFRPWCVAALTNGELLVTGDGHRIHVLDKQGRES
RVIQVTGAAEPEETTKGVAVDGLGRIIVTAGYQVFVLSPSGDVMLKFGDK
GRGQQQLGSELRVVVNSSNQIIISDFDKHNLKIFDPAGRHLCTCGSLGSE
PGRLNNPDCVITDSEDNIIVSDYSNSRVSLFSRDGTFIRHVLTQGEHGLC
GPMGLALTHGGHLVVSDYLRNSIAFFHGK Run BLAST on NCBI mRNA from alignment at Sc0000068:1280981..1283701- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78710_cuf2 ID=transcript:BL78710_cuf2|Name=transcript:BL78710_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2721bp|location=Sequence derived from alignment at Sc0000068:1280981..1283701- (Branchiostoma lanceolatum)
CCCCTTTTGACGCTACAGTGGCCAAAGTCAATATCCAGTACTTGGTAAAC
ATGGCGTCCAACGCGATCAGCGACATTACCGACGAATTTCTCGTCTGCCA
GGTCTGTTTGGAGGACTTCAGGCAGCCTAAGATGCTGCCGTGTCTTCACA
CCTTCTGCCAGCCGTGTTTGGAGAGGCTCCTGGCCACAGAGCCGGTAGGG
AAACTGGATTGTCCAACATGCCGACAGGACGTGCCCCTGCCAAGAAATGG
CGTCCAGGGGCTGAGGTCCAACTTCCTCGTCGGAAAACTGCGCGACATTC
TGCAACAACAGCCGAAAGGGGAAACTTCCGAGGCGCGGGAGGATGGAGTC
TCCTGTACGGCCTGTGAGGTCGGGAACTCGGCTCAGCTTTACTGTGTGGA
GTGTACCGACTACCTGTGTCAGACGTGTAACGACACCCACCGTCGGTTCA
AGGCGACCAAGTCCCACACAGTTGTAACACTTCAAGACCTACAATCTGGC
CAAGCTGCCGCCGAGTTTCGGGCAAGGGAGACCTCCAAGTGTGAGGATCA
CCATGAAGTGAACAAGTTCTACTGTGACACCTGTCACTGGGTCATCTGCC
TGCACTGTGTGGTCACGGCCCACAACGATCACCAGTATGTTGAGATAGAG
AAGGCGGCCGAGAGGGAGGGAGCAAAGATCAAGGCAAAACTGGCGACAGT
AAAGAACACAGCAGACTTGCATGAGAAGTGGATACAACTGTTGCAATTAG
TGAAGGACGGGTGGTCTTCACAGCTACAGCGTACAGAAGAACTGATCAGA
AAACAAGTAAACTCGATCATTGAGGCCGCGAAGAAGGTGGAAAACGACAG
AATCGGTCAGCTTCGCGCCATGAATGCTGCTCGGGAGAGACAGATGGAAG
CCGCCATGGAGGCAGCTGAGATGGACCTGGCCTCAGCCAGGAGCTGTGTC
CTGTTCACGGACAACGTGTTGGAGTACGGAAGCCCGGCGGAGGTCATGTC
GGTGGCCGGAGAACTGACCGGACGGTTGGACCAAACCGCGGAGGACAAAA
ACACAGAGAATTCTGAACTGACCAAGAACTTTGTGACCTTGACCTTTGAC
CCACCAGCTGGTGAACTGGAGCGGGACGTAGCTAAACTTGTAGGTGGGAT
AAACCAGGTGAGAACACCTTTGGACCCACCTCAAATCACGCATGTGCGAC
CGAACGTGGTGATCGGTAACGGCGGCGCGAGTTTAGAACTCGTCGAAACT
GTTGGAGAGCCGGGCAGTGGAGATGGGCAGTTACACTATCCGATCTCTCT
CGCTGTCACTGCCAAGGGAGAGATTGTAGTGACTGATTGTGACAATTCGC
GCCTGCAGTTTCTGGACAAAGATGGCTCATTTCAGAGGAATTTCGATCTG
GGATTCCGGCCATGGTGTGTGGCGGCACTGACAAACGGTGAGCTGTTGGT
GACTGGAGACGGACACAGGATTCACGTACTGGACAAACAGGGGAGGGAGT
CACGTGTCATCCAGGTGACAGGGGCTGCAGAGCCAGAGGAAACTACAAAA
GGCGTCGCTGTTGATGGTTTGGGGCGCATCATCGTCACTGCCGGGTACCA
AGTTTTTGTCCTCAGTCCCAGCGGTGACGTCATGCTGAAGTTCGGGGACA
AAGGTCGAGGTCAGCAGCAGCTGGGTTCCGAGCTCCGCGTTGTCGTCAAC
AGCAGCAACCAAATCATCATCAGTGACTTTGATAAACACAACTTGAAGAT
ATTTGACCCCGCTGGTCGTCATCTCTGCACGTGCGGGTCGCTGGGCTCGG
AACCTGGTCGGCTGAACAACCCCGATTGTGTCATCACGGACAGCGAGGAC
AACATCATCGTGTCTGACTACAGCAACAGTCGTGTTTCCCTGTTCAGTCG
GGACGGCACGTTTATCAGGCACGTGCTGACACAGGGGGAACATGGACTGT
GCGGTCCAATGGGACTGGCGCTGACTCACGGCGGACATTTGGTCGTTTCT
GACTATCTTCGTAATTCTATCGCCTTTTTTCACGGGAAATGAAAGTTTTT
AACAACTTCCCAACATCCTTCTATTACATGTACGTGTTATCATACTTAAC
AGATCTCAATGCACTTTACAGTGTTGTTAACGTTGTTCCAAAGCATGCGA
CAATATATAATGCCATACATTCATCTGTGGCGCTACAATAAATTCAAATT
TGTCCTTCAAATCCAATCTCCAAAAGAGAAAATTATGTCTCTATAAATTA
TTGTATCATACGCGTTATTTGGACATATCATATATCCAACAAGGACAAAA
GAGTTATCTTTATATCAGTAATAAAGACGAAAAAGGTTGCCCTATCATGT
CTTTGTATAATTAATGTTGCTTTCAAGTATGTTTACAGTTTCAACCCTCT
GCATTTTACTGTACATCTAAAGTATACATTGATAAGGCTCAAAAATATTT
TTAGAATAAGAAAAGTTTTAGGCACACTTGAAGCGTTCTTCCATATATTG
AAGTGATCCGTGTATTTGTTCTAATACTTCTACGCGACAGAAGAACTCGA
CATTTTCAGGCAATTCTACTTAACTTCAAAACAACATTAACTAATAGCCA
ATAACATGGAAGCGAGGATGGTTACTAGGCAAGCCACGCCCGTTAGCAAC
CACGTCCCCCATGCCCCCTCCCCACCAACCGCCAGAGAAAGGCGAATTTT
ATTGTGGTGTGCAGAATTGCT Coding sequence (CDS) from alignment at Sc0000068:1280981..1283701- >transcript:BL78710_cuf2 ID=transcript:BL78710_cuf2|Name=transcript:BL78710_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2040bp|location=Sequence derived from alignment at Sc0000068:1280981..1283701- (Branchiostoma lanceolatum)
CCTTTTGACGCTACAGTGGCCAAAGTCAATATCCAGTACTTGGTAAACAT
GGCGTCCAACGCGATCAGCGACATTACCGACGAATTTCTCGTCTGCCAGG
TCTGTTTGGAGGACTTCAGGCAGCCTAAGATGCTGCCGTGTCTTCACACC
TTCTGCCAGCCGTGTTTGGAGAGGCTCCTGGCCACAGAGCCGGTAGGGAA
ACTGGATTGTCCAACATGCCGACAGGACGTGCCCCTGCCAAGAAATGGCG
TCCAGGGGCTGAGGTCCAACTTCCTCGTCGGAAAACTGCGCGACATTCTG
CAACAACAGCCGAAAGGGGAAACTTCCGAGGCGCGGGAGGATGGAGTCTC
CTGTACGGCCTGTGAGGTCGGGAACTCGGCTCAGCTTTACTGTGTGGAGT
GTACCGACTACCTGTGTCAGACGTGTAACGACACCCACCGTCGGTTCAAG
GCGACCAAGTCCCACACAGTTGTAACACTTCAAGACCTACAATCTGGCCA
AGCTGCCGCCGAGTTTCGGGCAAGGGAGACCTCCAAGTGTGAGGATCACC
ATGAAGTGAACAAGTTCTACTGTGACACCTGTCACTGGGTCATCTGCCTG
CACTGTGTGGTCACGGCCCACAACGATCACCAGTATGTTGAGATAGAGAA
GGCGGCCGAGAGGGAGGGAGCAAAGATCAAGGCAAAACTGGCGACAGTAA
AGAACACAGCAGACTTGCATGAGAAGTGGATACAACTGTTGCAATTAGTG
AAGGACGGGTGGTCTTCACAGCTACAGCGTACAGAAGAACTGATCAGAAA
ACAAGTAAACTCGATCATTGAGGCCGCGAAGAAGGTGGAAAACGACAGAA
TCGGTCAGCTTCGCGCCATGAATGCTGCTCGGGAGAGACAGATGGAAGCC
GCCATGGAGGCAGCTGAGATGGACCTGGCCTCAGCCAGGAGCTGTGTCCT
GTTCACGGACAACGTGTTGGAGTACGGAAGCCCGGCGGAGGTCATGTCGG
TGGCCGGAGAACTGACCGGACGGTTGGACCAAACCGCGGAGGACAAAAAC
ACAGAGAATTCTGAACTGACCAAGAACTTTGTGACCTTGACCTTTGACCC
ACCAGCTGGTGAACTGGAGCGGGACGTAGCTAAACTTGTAGGTGGGATAA
ACCAGGTGAGAACACCTTTGGACCCACCTCAAATCACGCATGTGCGACCG
AACGTGGTGATCGGTAACGGCGGCGCGAGTTTAGAACTCGTCGAAACTGT
TGGAGAGCCGGGCAGTGGAGATGGGCAGTTACACTATCCGATCTCTCTCG
CTGTCACTGCCAAGGGAGAGATTGTAGTGACTGATTGTGACAATTCGCGC
CTGCAGTTTCTGGACAAAGATGGCTCATTTCAGAGGAATTTCGATCTGGG
ATTCCGGCCATGGTGTGTGGCGGCACTGACAAACGGTGAGCTGTTGGTGA
CTGGAGACGGACACAGGATTCACGTACTGGACAAACAGGGGAGGGAGTCA
CGTGTCATCCAGGTGACAGGGGCTGCAGAGCCAGAGGAAACTACAAAAGG
CGTCGCTGTTGATGGTTTGGGGCGCATCATCGTCACTGCCGGGTACCAAG
TTTTTGTCCTCAGTCCCAGCGGTGACGTCATGCTGAAGTTCGGGGACAAA
GGTCGAGGTCAGCAGCAGCTGGGTTCCGAGCTCCGCGTTGTCGTCAACAG
CAGCAACCAAATCATCATCAGTGACTTTGATAAACACAACTTGAAGATAT
TTGACCCCGCTGGTCGTCATCTCTGCACGTGCGGGTCGCTGGGCTCGGAA
CCTGGTCGGCTGAACAACCCCGATTGTGTCATCACGGACAGCGAGGACAA
CATCATCGTGTCTGACTACAGCAACAGTCGTGTTTCCCTGTTCAGTCGGG
ACGGCACGTTTATCAGGCACGTGCTGACACAGGGGGAACATGGACTGTGC
GGTCCAATGGGACTGGCGCTGACTCACGGCGGACATTTGGTCGTTTCTGA
CTATCTTCGTAATTCTATCGCCTTTTTTCACGGGAAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000068 | genome | Sc0000068:1280981..1283701 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78710_cuf2 |
| Biotype | protein_coding |
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