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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL79142_cuf2 >transcript:BL79142_cuf2-protein ID=transcript:BL79142_cuf2-protein|Name=transcript:BL79142_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=238bp
MATLLCMRMWKQCTVGRRLMNTTVFNRNARTHQASSTCILMVPGSSAEAV
PRPKEKPSVATQAINYNILSEVKVPMMSSEKSVLVDSLIFHKSPSLTPLE
CKLTLQYYLPSSQPAIFPEITITDPAVKTVYELPVQKPTSVEDRQPTGVP
DFIGDTTKDTVIECRNDLFRRRKKMNKHKLKKLKKRMKFVLRRKRLKKIK
RKVIKLKERVENLYRKFGMTPPDNIEEQCNKVYPTIRC Run BLAST on NCBI mRNA from alignment at Sc0000666:9545..11239+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL79142_cuf2 ID=transcript:BL79142_cuf2|Name=transcript:BL79142_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=1695bp|location=Sequence derived from alignment at Sc0000666:9545..11239+ (Branchiostoma lanceolatum)
TGAAAAAAGGCTATTTTTCTCCCTAGGAAGGTAAAATAGTCAAATCTTAT
GCTGTTGTACAATCTTATGGTTGATGTTTAGTTTTCAACATTGAACAGTT
TGACCGAATAGTCCAGCTAGCTGTCACGACCTTTCTTTCGACTTGCACAG
CTCATGCACATGCGTGTGGGAGGGGGGCACCTCGTAACCTTCCCGGATCC
CGTGGCCAAGTCGAAAATTAGATAATATCATTATGGACGTGTAAAAAGAG
TTATTGTAGCTTTAAGACCATTTAAAGTCATTACTTTCTCCATACAGAAC
AGAATAGAGTGCAGCCATGGCAACCCTGCTGTGTATGAGGATGTGGAAGC
AGTGCACAGTTGGGAGGCGTCTGATGAACACAACTGTGTTCAATAGGAAT
GCCAGAACACATCAGGGTAAGGAGTGTTTGTGTTTAAACGTTACTCCCAT
AGTATTGCTTTTGACAGTGAGTCTCTGTCAGTTTCATTTTCTCCTTTTTC
AATATTTATCTGGTAAATATTTATTTGCTCGAATTGAATAGGCCACCTAG
CTGTCTGAAAGTTCAATAAATGAATGTGGTACTAGTAATGTAATAAACCT
ATGGAAAACGTAAAACAAGACAATACAATACAGCCGAATGTTTCATTTCT
TTGATCAAACATGTGACTGTTTTCTGTTATTCCAGCAAGCAGTACCTGCA
TTCTGATGGTGCCTGGGAGTTCTGCTGAAGCTGTACCTAGACCAAAGGAA
AAGCCATCAGTGGCAACACAAGCCATTAATTATAACATCCTGTCTGAAGT
CAAGGTCCCAATGATGTCATCAGAAAAGAGTGTACTTGTGGACAGTTTGA
TTTTCCACAAAAGCCCATCCCTCACTCCCTTGGAGTGTAAGCTAACACTT
CAGTACTACCTTCCCAGCTCCCAGCCAGCTATTTTCCCAGAGATAACCAT
AACAGATCCTGCTGTTAAGACAGTGTATGAACTCCCTGTTCAGAAACCAA
CATCTGTAGAAGACAGGCAGCCAACAGGTGTCCCAGATTTCATTGGAGAC
ACCACCAAGGATACTGTCATAGAGTGTAGGAATGACCTGTTCCGTCGCAG
GAAGAAGATGAACAAGCATAAGCTGAAGAAGCTCAAGAAGAGAATGAAGT
TTGTACTGAGAAGGAAACGTCTCAAGAAAATTAAGAGAAAGGTTATAAAG
CTGAAAGAACGGGTTGAAAACCTGTACAGGAAGTTTGGTATGACCCCTCC
TGACAATATAGAAGAACAGTGTAACAAGGTGTACCCCACCATCAGGTGTT
GAAGGGGCAGGAATAGAAACTGGTTGAACTCGTAGAGTACATGAGTAAAC
CTAGATGCATTTCAAACATGAATCAATTGTATCAACAGAAAAACAGTTCA
TTATCATGATACTAACTTGCACCGATCTGCTGAGTCACGATCATCCCAGC
TTTACCATGTTCATTTTGGTGTACATCCATTCTTATTGTTATTAGATGCA
CTTATCCCTTGTTTTACATTATGACAAGTGTATTCTGCAAAGAGACATTG
TCACCAAGGAGGTTAAAAGAATTACCAATATATTTACTTCATATAGAATT
ATGTAAACCTTCGGTTTAGCATATTTGATAGTACTGTGTTCAATGTCGAT
GTACGCTGTTTGAGTAAAGATCTTTAAAACTGTATACAATCAATC Coding sequence (CDS) from alignment at Sc0000666:9545..11239+ >transcript:BL79142_cuf2 ID=transcript:BL79142_cuf2|Name=transcript:BL79142_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1434bp|location=Sequence derived from alignment at Sc0000666:9545..11239+ (Branchiostoma lanceolatum)
ATGGCAACCCTGCTGTGTATGAGGATGTGGAAGCAGTGCACAGTTGGGAG
GCGTCTGATGAACACAACTGTGTTCAATAGGAATGCCAGAACACATCAGG
CAAGCAGTACCTGCATTCTGATGGTGCCTGGGAGTTCTGCTGAAGCTGTA
CCTAGACCAAAGGAAAAGCCATCAGTGGCAACACAAGCCATTAATTATAA
CATCCTGTCTGAAGTCAAGGTCCCAATGATGTCATCAGAAAAGAGTGTAC
TTGTGGACAGTTTGATTTTCCACAAAAGCCCATCCCTCACTCCCTTGGAG
TGTAAGCTAACACTTCAGTACTACCTTCCCAGCTCCCAGCCAGCTATTTT
CCCAGAGATAACCATAACAGATCCTGCTGTTAAGACAGTGTATGAACTCC
CTGTTCAGAAACCAACATCTGTAGAAGACAGGCAGCCAACAGGTGTCCCA
GATTTCATTGGAGACACCACCAAGGATACTGTCATAGAGTGTAGGAATGA
CCTGTTCCGTCGCAGGAAGAAGATGAACAAGCATAAGCTGAAGAAGCTCA
AGAAGAGAATGAAGTTTGTACTGAGAAGGAAACGTCTCAAGAAAATTAAG
AGAAAGGTTATAAAGCTGAAAGAACGGGTTGAAAACCTGTACAGGAAGTT
TGGTATGACCCCTCCTGACAATATAGAAGAACAGTGTAACAAGGTGTACC
CCACCATCAGGTGTTGAATGGCAACCCTGCTGTGTATGAGGATGTGGAAG
CAGTGCACAGTTGGGAGGCGTCTGATGAACACAACTGTGTTCAATAGGAA
TGCCAGAACACATCAGGCAAGCAGTACCTGCATTCTGATGGTGCCTGGGA
GTTCTGCTGAAGCTGTACCTAGACCAAAGGAAAAGCCATCAGTGGCAACA
CAAGCCATTAATTATAACATCCTGTCTGAAGTCAAGGTCCCAATGATGTC
ATCAGAAAAGAGTGTACTTGTGGACAGTTTGATTTTCCACAAAAGCCCAT
CCCTCACTCCCTTGGAGTGTAAGCTAACACTTCAGTACTACCTTCCCAGC
TCCCAGCCAGCTATTTTCCCAGAGATAACCATAACAGATCCTGCTGTTAA
GACAGTGTATGAACTCCCTGTTCAGAAACCAACATCTGTAGAAGACAGGC
AGCCAACAGGTGTCCCAGATTTCATTGGAGACACCACCAAGGATACTGTC
ATAGAGTGTAGGAATGACCTGTTCCGTCGCAGGAAGAAGATGAACAAGCA
TAAGCTGAAGAAGCTCAAGAAGAGAATGAAGTTTGTACTGAGAAGGAAAC
GTCTCAAGAAAATTAAGAGAAAGGTTATAAAGCTGAAAGAACGGGTTGAA
AACCTGTACAGGAAGTTTGGTATGACCCCTCCTGACAATATAGAAGAACA
GTGTAACAAGGTGTACCCCACCATCAGGTGTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000666 | genome | Sc0000666:9545..11239 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL79142_cuf2 |
| Biotype | protein_coding |
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