|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL79504_cuf0 >transcript:BL79504_cuf0-protein ID=transcript:BL79504_cuf0-protein|Name=transcript:BL79504_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=476bp
MNLDGAGEARKTKRKASAERGGKAKNYACPSCKYKAGYAAQLKDHLRVHT
GERPYQCQQCDYSASLKSNLKRHVIAKHTGERSYDHGHPRYSTVRKGERA
RSKPTSDESPYKCDLCDYSATNKLNLKRHNVLKHSNCKPHKCPTCDYSTV
NKGSLKIHMVIHSNEKPYSCDICDYSTKRKGCLRQHMVKHAGEKPYKCDI
CGYSTISLSNLKRHISQHTGKKPYKCDVCGYCTAQMSNLKQHISKHTGEK
PYKCEQCDYATARVQDFKMHMVIHTGKKAYKCEVCGHAAAKPSHLKRHMA
KHTGEKPYKCDQCDYATVLKYNLKIHMVIHTGEKVHKCEVCGYVTARMSY
LQKHITKHTGEKPYNCDLCSYGTVHISHLKRHMVKHTGEKPYKCDVCGFS
AAYLWNLKVHISKHTGEKPYTCDHCGYATARMNDLKKHIAKHTGVKPYKC
DICGYCTVQIANLKRHISNKHAGEKP Run BLAST on NCBI mRNA from alignment at Sc0000008:1441287..1445889+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL79504_cuf0 ID=transcript:BL79504_cuf0|Name=transcript:BL79504_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4603bp|location=Sequence derived from alignment at Sc0000008:1441287..1445889+ (Branchiostoma lanceolatum)
GTATGTGAAAGCGGCACGAGCAATGATGATCGTTTAGGCTTGGGGGGCTT
GGGGTATCTCTTAATTAAGTCTTCTTTGCTGCTGAATCAGTCATTACAAG
GAAGTTAAACCTCGTTGGTCATCAGGAGGATAACGTTGGAGGATCCCTCA
GTTTGTTCCTGAGACTTGGACGAGGTGAACAAATATGTTTTTATGATAAT
TGGTTATAACGGGGAATTCAGAATAAGGAGAACAGGGGAGTAACAGTTGG
TGGAGGGATGTGGAAGACTAGATCCTCTTTGATCCAGTCAAACTTGTCCA
AGCGACCACCTCTACTTAAAGACCATCTGGCCAATGTGAACATGTTTGAA
ATTGAATGGTCATTTGAGAACCCTGTCTATAGTGTCATAGACCAGTTTGA
TCGGTACCCTGAGTGGTCTTCCCGGGTAGTTTTGCTGTTATTTGGGCTGG
TGCATATCTTCATGTAATAAGGTTTCTTTGAATATGCGGTTTCTCTCTAC
AGTAGTTTTAAGTGATATAACACATTGATATTGTATCATTAATATATACC
ACATCTTGCAACTGCTTCTTGATATTTCGTCATGTCTCTAACCAAAGACA
TCATATGGGACCAAAGCCAAGGATATTGCTAAACTATGCGACAATTTTGC
TATCCAGGCTACGAATATTCCGTCGCTTCACTTCTTGACCCGATGGCCTT
TGTTCCGTCCAAGCGTATTGAAAAGGACGCGGACAGTACTACAATGTAGT
TCCTCATGACCCCGAATGACCTCATTTAAAATTACTTCTAAAACTGTACC
TTCAACTCAAGCTTCTCTAGTGCACCCTTTTATAATCTTATTGGCATCGA
TGTCAGTCAGGCTGTGGTCCTTAACTATAGAAATCCCCATAGGTAAAAGA
ATACTGGTACCTTGAAGTTCATTTTGGGTTGACCCTTACCCTTTAACCTG
TCACACTAGACGGTCGGCAAATGTTTGCGAAAGCGGCTTGAGCACATAGT
TTAGGCTTGGGATGTCTCTTCTTCTTTGCTGCTGAATCATCACAAGGAGA
TTAAGTCCCCTTGGTCATCAGGAGGTTAACGTTTAAAGTTCGGGGAAGAG
GATCTCTTAGTTTGGTCCTGGGACGTGGATAAGGTGAGTAAATAAAGTAT
GTTCTTTTTGATAACGGCAAATGAGGAGGACAGGGAATTGCGGATTGGAG
GAGTGGGTCTTTAGGACTATATCCTCTTTGATCAGTTAAACCTGAGTGTG
CAAGTGACCACCTCTATGTAAGGACCATCAGGCCAATGTGACAACTTTTC
GGTGGTCATTTAAGAACCCTGTCTACTAGTATATTGTCCGCATAGACCAG
TTTTTATCGGTCCCCTATATGGTCTTCTTGTGCAGTTTTGACTATTATTT
GCAGACTTGTGGGTTGGCGCTTATTAGAAGATTCTGTTCCATTCTATAGT
ACCTCTTAGTGACAAAGAATGAGTAACACTTTGATATTGTGTTAATTTTC
AACACATCTTCCACCTGATTCTTAATATTTTCCCATGCTTCGAACTGTAC
GACAAGATCGCTAGCTACTGGCTATTTCAAATGTTACCAAGACTGCCACC
AAGACAGGCTATGAATATTCCGTTGTGTCGTTCTTTGACCAGGCCGTAGC
CCTTTGTTCCGTATATACATATTGAAAAGGACGTGGATAAAAGAGGTCGA
GGGTATTGAGAGGGGATGGCGATGCATGGTGGGTTGTCTTTTACTCCTGT
GACAGATGTTTGTACCACTACCAGGAAATCGTGTTTAATCTCCAAACAGA
TGTAGGATGTGTGGCCTCCGGTTGGCGTAGCGGTTAGGATGTTTGGCCCA
GATGTCCGAATCCCCTGGCTTACTGCCATCTACACCCCCCCCCCACCTCT
ATGTGGTGCCCTTGCGAAAAGCACTTTACTCGACTTTCCTGATTCTCACT
CCACCCAGGTGTAGAAATAAGTACACGGGGAGGTAAAAGTCAGTGGAAGG
AGAGGGGTGGTCGCTGCTAACTGGTGCATTCTCTTTTAACTGTTCTTTTG
TTCAACAGTCAGAAGATTGGATTCAAAACGACCAAGGATAAGAGTCAAGG
GGCCGGCAGGAACCCCTCTTGTCCAGAAACAGACTGCGGAGGGACTTCGG
AACAGAACACTATGAATCTTGATGGGGCAGGTGAAGCTCGAAAAACCAAA
AGAAAGGCAAGTGCCGAAAGGGGAGGGAAAGCGAAGAACTACGCCTGCCC
GTCCTGTAAGTATAAAGCAGGGTACGCGGCACAGTTGAAAGATCACCTCA
GAGTCCACACCGGTGAGAGACCATACCAGTGCCAACAGTGTGACTATTCT
GCATCGTTAAAGAGTAATCTGAAAAGGCACGTCATTGCGAAACACACCGG
TGAGAGATCATACGACCATGGGCACCCCAGGTATTCGACGGTTCGCAAAG
GTGAACGTGCCAGGTCCAAACCCACTAGTGATGAGAGTCCGTACAAGTGC
GATCTTTGTGACTATTCTGCTACAAACAAGTTGAATCTAAAGCGCCACAA
CGTGTTAAAACATAGTAACTGCAAGCCTCACAAATGCCCAACATGTGATT
ATTCTACTGTGAACAAAGGTAGTCTAAAAATTCACATGGTTATCCATTCC
AACGAGAAACCATACAGCTGTGATATTTGTGATTACTCCACTAAAAGGAA
GGGTTGTTTGAGACAGCACATGGTGAAACATGCAGGTGAGAAACCTTACA
AATGCGACATATGTGGTTATTCTACAATTAGTCTGTCAAATTTGAAACGT
CACATTTCTCAGCACACTGGCAAAAAGCCTTACAAATGTGACGTTTGTGG
TTATTGTACAGCACAAATGTCAAATTTGAAACAGCACATTTCTAAGCACA
CTGGTGAGAAACCTTACAAATGTGAGCAGTGCGACTACGCTACAGCACGA
GTACAGGATTTTAAGATGCATATGGTAATACACACTGGAAAAAAAGCATA
CAAATGTGAAGTTTGTGGTCATGCTGCAGCAAAACCGTCTCATTTGAAGA
GGCACATGGCCAAACATACCGGTGAGAAACCGTACAAATGTGACCAGTGC
GACTATGCTACTGTACTAAAATATAACTTGAAAATACATATGGTAATACA
CACGGGTGAAAAGGTACACAAATGTGAGGTTTGCGGTTATGTAACAGCAC
GGATGTCTTACTTACAAAAGCACATTACCAAACATACTGGTGAGAAGCCG
TACAATTGTGACCTTTGTAGTTATGGTACAGTACATATATCTCATTTGAA
ACGGCACATGGTTAAACACACTGGTGAGAAACCTTACAAATGTGATGTTT
GTGGTTTTTCTGCAGCATACTTGTGGAATTTGAAAGTGCACATTTCTAAG
CACACTGGTGAGAAACCATACACATGTGACCATTGTGGGTATGCTACAGC
ACGAATGAATGACTTGAAGAAGCACATTGCTAAGCACACCGGTGTGAAAC
CTTACAAATGTGATATTTGTGGTTATTGTACAGTACAAATTGCAAATTTG
AAACGGCACATTTCTAATAAGCATGCTGGTGAGAAACCTTAGAAATGTGA
CATTTGTGGTTATGCTGCAGCAAAGACTTCTTATTTGAAGACGCACATGG
CCAAACACACCGGTGAGAAACCTTACAAATGTGGCAAGTGCGACTATGCT
ACTGCACGAATGTATGATTTGAAATAGAACATGGGAAGGAAGGCACACTG
ACGAAAAGCAATACCGATATGGAGTTTCCGATCGACTGCTCAAGCAGGGT
CTGTAAAATTCTATGTAGTTACGGAAAAAGAGAAGCCCAATGTATGAAGC
AATGTATTAAGTGTGAAATGTTTTCCGAAGGAGGTATGCTTACACATGTG
TATGTAAGAGATTCATTGTGAAGTTATTGCATTTTTTATACCTAATTTAC
GGACATCGAACGGAAAATGTTGAGGATGTTTTCTTTTTACGACTGGCTCG
ATAGTACAAGTATTGCTGAGATAGCTAGCTTATATTGTAATGTTTGTTCT
GTTGTTGTAAGCCAGATTGCAATGTGTCATAAGGTGTATTGTACTTAGAT
AAAGTACTTTGTAATGTGTACGGAGTATTGTTTTTGACACAGGACAAACA
GCTCATTTAAATTGGATATGGTAGAGGCTTTTGACATACCACACTTAACC
GCTAGATGTCGGTGTGAATATAGAGTGCTCTGGGATGGAAATAACTCAGT
AATTCCCTAGTAAGAATTTTGCGATTCTCTTTTACTAGTGATTTAATGAG
TTAGGGAGTTGTTAGCTCATTAATTTACTTTCTAGTGTCAAAGTTTGCGC
TACGTGACTGTACAATATACTTAAAACGTGCATGTGACAGCCTTAGGCAT
CTGTACAGGGGAAACGTGAGCTAGCGAGATTATCGTCCCAATGACATCAT
ATGATAAGCGGCCAACCCGAAGGTTACCGACCCAGAGGGGGTCATTAATT
CCAGCCAGCGAGAGATTGTGTAAACACAAGTTAGCTACACTTGAATGTCT
ATTTCTTTGGTAGAGCAAGCTACGCAGTCTTTGCTCTGCTCAGCATAACA
ATA Coding sequence (CDS) from alignment at Sc0000008:1441287..1445889+ >transcript:BL79504_cuf0 ID=transcript:BL79504_cuf0|Name=transcript:BL79504_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1431bp|location=Sequence derived from alignment at Sc0000008:1441287..1445889+ (Branchiostoma lanceolatum)
ATGAATCTTGATGGGGCAGGTGAAGCTCGAAAAACCAAAAGAAAGGCAAG
TGCCGAAAGGGGAGGGAAAGCGAAGAACTACGCCTGCCCGTCCTGTAAGT
ATAAAGCAGGGTACGCGGCACAGTTGAAAGATCACCTCAGAGTCCACACC
GGTGAGAGACCATACCAGTGCCAACAGTGTGACTATTCTGCATCGTTAAA
GAGTAATCTGAAAAGGCACGTCATTGCGAAACACACCGGTGAGAGATCAT
ACGACCATGGGCACCCCAGGTATTCGACGGTTCGCAAAGGTGAACGTGCC
AGGTCCAAACCCACTAGTGATGAGAGTCCGTACAAGTGCGATCTTTGTGA
CTATTCTGCTACAAACAAGTTGAATCTAAAGCGCCACAACGTGTTAAAAC
ATAGTAACTGCAAGCCTCACAAATGCCCAACATGTGATTATTCTACTGTG
AACAAAGGTAGTCTAAAAATTCACATGGTTATCCATTCCAACGAGAAACC
ATACAGCTGTGATATTTGTGATTACTCCACTAAAAGGAAGGGTTGTTTGA
GACAGCACATGGTGAAACATGCAGGTGAGAAACCTTACAAATGCGACATA
TGTGGTTATTCTACAATTAGTCTGTCAAATTTGAAACGTCACATTTCTCA
GCACACTGGCAAAAAGCCTTACAAATGTGACGTTTGTGGTTATTGTACAG
CACAAATGTCAAATTTGAAACAGCACATTTCTAAGCACACTGGTGAGAAA
CCTTACAAATGTGAGCAGTGCGACTACGCTACAGCACGAGTACAGGATTT
TAAGATGCATATGGTAATACACACTGGAAAAAAAGCATACAAATGTGAAG
TTTGTGGTCATGCTGCAGCAAAACCGTCTCATTTGAAGAGGCACATGGCC
AAACATACCGGTGAGAAACCGTACAAATGTGACCAGTGCGACTATGCTAC
TGTACTAAAATATAACTTGAAAATACATATGGTAATACACACGGGTGAAA
AGGTACACAAATGTGAGGTTTGCGGTTATGTAACAGCACGGATGTCTTAC
TTACAAAAGCACATTACCAAACATACTGGTGAGAAGCCGTACAATTGTGA
CCTTTGTAGTTATGGTACAGTACATATATCTCATTTGAAACGGCACATGG
TTAAACACACTGGTGAGAAACCTTACAAATGTGATGTTTGTGGTTTTTCT
GCAGCATACTTGTGGAATTTGAAAGTGCACATTTCTAAGCACACTGGTGA
GAAACCATACACATGTGACCATTGTGGGTATGCTACAGCACGAATGAATG
ACTTGAAGAAGCACATTGCTAAGCACACCGGTGTGAAACCTTACAAATGT
GATATTTGTGGTTATTGTACAGTACAAATTGCAAATTTGAAACGGCACAT
TTCTAATAAGCATGCTGGTGAGAAACCTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000008 | genome | Sc0000008:1441287..1445889 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL79504_cuf0 |
| Biotype | protein_coding |
|
