transcript:BL80038_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL80038_cuf0
Unique Nametranscript:BL80038_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL80038_cuf0

>transcript:BL80038_cuf0-protein ID=transcript:BL80038_cuf0-protein|Name=transcript:BL80038_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=125bp
MYFGAKTSQPPAILSFAPGHCQLIIGQICKIPVAKQNVRTDDHEETRLSI
ANFGQRNSDRKLNRVKLEVLCYIRTECEPISAHFSLNQPHRVYTVEKSSN
VDGKPTVDSCIYECSMNKVKGLHAS
Run BLAST on NCBI

mRNA from alignment at Sc0002074:3..653+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL80038_cuf0 ID=transcript:BL80038_cuf0|Name=transcript:BL80038_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=651bp|location=Sequence derived from alignment at Sc0002074:3..653+ (Branchiostoma lanceolatum)
GGTTGTTTTACCCGTAGGTCTGAACCCAACGCAGCTTAAGTCGGTTTACT
TAATTGCATAAGAACTGATCATGGGGCACGGAGTCAATATGAAAATTCAT
GTATTTCGGTGCCAAAACAAGCCAGCCCCCAGCAATACTTTCTTTTGCTC
CAGGGCACTGCCAGCTGATAATAGGGCAGATTTGCAAGATTCCAGTAGCA
AAACAAAATGTGCGAACAGATGATCATGAGGAAACACGGCTGTCAATCGC
TAATTTCGGACAGCGAAACTCTGATCGAAAGCTGAACAGGTATTACCATG
TAGCCGAATATTGATCAGATACAGATCTGAAAATGGATTTAAATCAGATT
TGATAGAAAATTTGATTAAGAATTTGAACAGGGCCTTTGTTTCATTCCAT
CAGGGTGAAGCTTGAGGTGCTGTGTTACATTCGGACGGAGTGTGAGCCAA
TCAGTGCTCACTTCAGTCTGAACCAGCCTCACAGGGTCTACACCGTAGAG
AAGTCATCAAATGTGGATGGCAAACCCACGGTAGACAGCTGTATATACGA
GTGCTCCATGAACAAGGTAAAAGGGCTTCATGCTTCGTAGCTTGGTGTTA
ATTTATCTTCTAATTCTATGCTAATTGTCACCATGAAAAATGGAGAATAT
T

Coding sequence (CDS) from alignment at Sc0002074:3..653+

>transcript:BL80038_cuf0 ID=transcript:BL80038_cuf0|Name=transcript:BL80038_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=756bp|location=Sequence derived from alignment at Sc0002074:3..653+ (Branchiostoma lanceolatum)
ATGTATTTCGGTGCCAAAACAAGCCAGCCCCCAGCAATACTTTCTTTTGC
TCCAGGGCACTGCCAGCTGATAATAGGGCAGATTTGCAAGATTCCAGTAG
CAAAACAAAATGTGCGAACAGATGATCATGAGGAAACACGGCTGTCAATC
GCTAATTTCGGACAGCGAAACTCTGATCGAAAGCTGAACAGGGTGAAGCT
TGAGGTGCTGTGTTACATTCGGACGGAGTGTGAGCCAATCAGTGCTCACT
TCAGTCTGAACCAGCCTCACAGGGTCTACACCGTAGAGAAGTCATCAAAT
GTGGATGGCAAACCCACGGTAGACAGCTGTATATACGAGTGCTCCATGAA
CAAGGTAAAAGGGCTTCATGCTTCGTAGATGTATTTCGGTGCCAAAACAA
GCCAGCCCCCAGCAATACTTTCTTTTGCTCCAGGGCACTGCCAGCTGATA
ATAGGGCAGATTTGCAAGATTCCAGTAGCAAAACAAAATGTGCGAACAGA
TGATCATGAGGAAACACGGCTGTCAATCGCTAATTTCGGACAGCGAAACT
CTGATCGAAAGCTGAACAGGGTGAAGCTTGAGGTGCTGTGTTACATTCGG
ACGGAGTGTGAGCCAATCAGTGCTCACTTCAGTCTGAACCAGCCTCACAG
GGTCTACACCGTAGAGAAGTCATCAAATGTGGATGGCAAACCCACGGTAG
ACAGCTGTATATACGAGTGCTCCATGAACAAGGTAAAAGGGCTTCATGCT
TCGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL80038gene:BL80038Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL80038_cuf0-E1BL80038_cuf0-E1-1564476830-511928Branchiostoma lanceolatumexon
BL80038_cuf0-E2BL80038_cuf0-E2-1564476830-511931Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL80038_cuf0transcript:BL80038_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0002074genomeSc0002074:3..653 +
Properties
Property NameValue
Transcript idBL80038_cuf0
Biotypeprotein_coding