|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL80166_cuf2 >transcript:BL80166_cuf2-protein ID=transcript:BL80166_cuf2-protein|Name=transcript:BL80166_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=105bp
MNPHWQPVYQLCSPCQVNWNYIAHTETLVEDFHLFFKKAGIVGRDNILPK
IEERVGSKFYLKGFMEIPLEEIQRIGRVYKADYDMFGYSFQEDLGSIFRR
VVGDI Run BLAST on NCBI mRNA from alignment at Sc0000186:176346..182415+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL80166_cuf2 ID=transcript:BL80166_cuf2|Name=transcript:BL80166_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=6070bp|location=Sequence derived from alignment at Sc0000186:176346..182415+ (Branchiostoma lanceolatum)
CTAAGGGATGCCAAGTTACACATTATCGTGGTCTAATGTCTAATGTCTGA
TGTATCTTCAAAATGATTACATCAAATTACATGTTTGTAAGATCTGCTCG
CTTTTATGCCCAAAAGGGGGTATGAGTAATGACACTGGCAAATGTATGCC
TGGGGGCTAGTCCTAAAAATATGTATAACGGCGAGTCAGAAAGAAGAGTA
ATCTGTATCGGATTTACATTTCTTTTTAATCGGTTGAAATTAGGCATAAC
GGTAAAGGCACATATCTTCATATCTAAACTAAGTTGAATTTATTTCTTCT
TTCCCTTGATCATCTTCAGACGCATTTTGACTCGGATGATAGAGAAGGGA
CGTATCTAAATGGAACCTTAAAACATATACCATTCGTGGCCTTCATTAAA
GCGATAGCAGCAAACAAGACGAGATGGATGAATCCGCATTGGCAACCAGT
ATACCAGCTGTGTTCACCATGCCAGGTACGAAATTAATAAAAACCAAATT
GCCTGGACGCATGATACAATTCTGAGCAACTATGCACACCAACTATGTCT
TTGGGCATTTTGTTTCATGTCGTTTATGTTTGCTGGTTTCTGTATTTGTT
TTTCATGTGTTGTTGTTTCTCTTTACATGTCTGTGTAGCAAATTAAAGTT
TAAAACAACGCCTAAGAATATTTTTACCTTATCAGGTAAAGATTGAAGGT
CAGCTTCGATGTTGTGTTTTCAAGGATTTTAAATGTTCTAACCCTTGGAT
GATTGACTTACGTGTTGCACTCGAAGCCCAATAGTTGAGTTCGTATATTG
CTGTTAACCCTCATCCGACCGACACATTTTTGCGACGAATCTGGCCGTAT
GGGGTCCAAACGGACCCCATTTTGCTTTGCCCCCTAAATATATTTCTGGT
GGATCTTATTGTAGTTATGGTGCATATCCTGTTTCAATAATCTATGGAGA
ATATTTTGACAAGTTTTGGTGTTGATGAGTAATGCTCATTATCATAATTT
ATGCTGAAAATGAGGAGAACCCGCATTTTTCTTAAACCCTATCTAGACTG
GGGGGACTAAAAGTGCCCGCGCCAACTTTGGCATCGTATAACTACCAAAC
GGCGTATGCTTGGACTACCAAACTTGGTGACGTTTCCTAAAATTTAGTTG
GCAACAATTCAATGATAATAGTTCAAGTTTATCATTTTTCCTGTTGCCAT
GGCAACGGGTTTCTGACAGGCATTTCATACAAAAAGGCCCCTTTTTTTAA
GAACAATGATATTTCTCAGGTTTTCTTGCCCAACCACACTAGTTTTCCAA
CATGTATAACATCATATGTAATTAGATGTAACTTTCATGATTTATTATTC
ATAATTTATGCTAATTCGATGACGTAATCGCTCCAAATCCAAGATGGCGG
ACAAGATGAGTATTTTAGGTATAAACAGTTTTTTTGCCTTCAAATTCGTC
ACTACCTGGTATTTTCTTAACCAGTAACATTCATATTAATGTTTACAGTC
TCTTTCTTTTGTGATTTGGGGTCATAAATGGAAACAAATGCATTTTAAAA
ATTTCAAAATGGCCGATCCAAGATGGCGGATCCCAGGGATCGCTAACAAC
ACATAACTTCTTTCTATGACGTCATTTTGACGTCAACGTAATCGCCATTG
ACGTTGTATGCCTTGACATACCTTAAAATCAATAATACACTCTATTTTGT
TTAATACTTTTCGATATTACGGGACTTTCCTATTTAGCCTATAAAATCAC
ATCGATGACGTCATAATTACGTCATATTACGTCATTACGTCACTACATTT
ACAGAAATTATGAAACTGTACGAGAACATCACTCCCAGCAAATTTGGTGA
GGATAGGTTATATCGTTTGGATGTTTTGAGGAATTTCTTTCAAATTACTT
AATAAACAATGCGAAATCATCTGGGGTCCGTTTTAACTTCTGAACGGTAT
CATGTATCCTTCCCAAATTTGTAGGAAGTGATGTTCATGTAAAGTTTTGT
AATTTCTTGAATTTTTGTGAAGTTATGACGTAATATGACGTAATTATTAC
GTCATTGATGTGATTTTATTGGCTAAATAGGGAATCCTCGTAATATCTAA
AGGTATCAAACAAAATAGTATGTATTGTTGATTTTAAGGTATACCAAGAC
ATGTTACGTAAATCGTAACTACGTTGACGTCAAAATGACGTCATTAAGGG
ACGTCACGTGTTGTTAGCGACCCCTTGGGATCCGCCATCTTGGATCGGCC
ATTTTGAAATTTTCAAAAATACTTTTTTTCCACTTATGACCCCAAAAAAA
CCTAAAAATAGACTAGAAACGTTAACCTAAATGTTTCTGGTAAAGAAAAT
GCCACGTAGTAACGATTTTGAAGGCGAAAAAGCCTGTTGATACCTAAAAT
AGTGTGATGGTCCGCAATCTTGGATTTTGACCGATTACGTCATCAAATTA
GCATAAATTATGAATATTAAATCATGAAAGTTACATCTAATTACATATGA
TGCTATACATGTAGGAAAACTAGTGTGGTTGAGCAAGAAAAGCTAAGAAA
TATCATTGTTTTAAAAAAATCAGTGATTTTTGCATAAAATGCCTTTCAGA
AACCCGTTGCCATGGCAACAAGAAAAATGATAAACTTATACAATTATCAT
AATATTGTTGGCAACTAAATTTTAGGAAAAGTCACCAAGTTTGGTATTCC
TACCGTATGTCATTCGGCAGTTATACGATGTCAAAGTTGGCACGGGCACT
TTTAGCCCCCCCCCCAGTCTGGATAGGGTTAAGCCGACAACTTTGAAAAA
AGATCAGACAACAAAGATTTGATAGATCTGCTAATATGTGAAAAAAGTTA
ATTCAGCAAATTATACAGATTTCGTCCTTTTCGGTAGAATAATGCAGATG
TACATGGATAATTGTATACACAAATTATGCACGTGTATTTCGCTCCAAGA
CGGCCTGTAGTGGATTGAAGCTGAGTCCATAAGAATCATATTTGCCGGAA
TAACTGAGAAAAGATGTTTATGAAATATAAAACGCTTAAAAAACTACTTA
AAATTTTCCAAATCATTGCAAACTTTCTGGTGTAAATGAAATGACATGGG
GTGCAATGAAATGTTTTTTGTAGAATATTAAACCTTTGTCCTGCTGGAGT
TCCAGAGCAAAAATATACCCTCACTGCTGAGGTGCCCAGAAAAATTTGTA
AGAAAGGGTATTCTTTTGATATTGCTCAATTTTAGTTACCACGCTTAACA
ACAACAGCGTAGATGCAACGTATGCATTCTAGAAATATTCTAATCCCAGC
AATTGTCAGGGTTGGCATACAGAACAAGAATGTGCAACCCGACAATTGTC
GGGCGTACAAGGACTTAAGTTTCTAATTATTTTTTTGAGTCCTTCATTAC
ATTTATTATGTTTCTATTATGATTATGTTCTTCCCAGGTCAACTGGAACT
ACATCGCCCATACTGAGACTCTGGTGGAAGACTTTCACCTTTTCTTTAAG
AAAGCTGGTATTGTTGGACGAGATAATATTCTACCCAAAATTGAAGAAAG
GGTCGGTAGTAAATTTTACCTTAAAGGCTTCATGGAGATACCGTTAGAAG
AAATACAACGCATTGGTAGAGTCTACAAAGCCGACTATGACATGTTCGGA
TATTCATTTCAAGAGGACCTGGGCAGTATATTCAGACGGGTCGTTGGAGA
TATTTAACATTACTGAAATGCTTTGATACAAACATAAAGATTGCCTTTTT
ACTTCCAAATGAAATAGACAAACGCACTTGTGAACGTGTTCACCGATTTG
CTACCTTAGTATAAGTTCCTGATCAGTACAATCAGCATTTATAATTAGTG
ATGTTTAAGTAAAAAAATACGACATGCATGGAATATATTAAACATGCTGC
CCGAATGTGCTGTTCTTGAACAAGCAATATTATTACGAAAAGGTCGGCAT
GCTTAGCCATTGGCGTTGTTCTGTATCCGTTCTGTAATTGAACATACACC
GATATCAATTGGCATGACTCTCTTTCTCAGTTGCATATGTTTGACACTCC
TACTAAGGAATTCAGTGGAATTATTGACTACTCTCATTAAATCCTGTTTT
GCATTGTCAAAGTAGGTAAATAATTGGCTTAGCATCCTTACCTCTATATA
ACAAAATGTATGAAAACAGTATAACTTTTCTTGAACCAATCCCTTTCAGA
ATCTCAAAAAAAATCAACCCTTGTATTAAAGAAGCCGTCAGGGATCACAA
GCCTATACCAATCACCAAAGAAAATGTTTAGTAAATTATAAAATCAACCA
GAATTTCTAGGGTTGGGGTGAAAAGTGCTAGCGCAAACTTTGAACTCCTG
AACGACGAGTGCAAGGATTTCCAAAATTGTTGACTTTTCCTACAAGTCAA
TCTTTTGTTTCTGTTTTGCCATGGTAACAGGTTTCTGACAGCCATATTTT
ACGAATGTCACTGACTTCCTTTGATTATTGAGCTTTCAAGGTTTTCTTGC
TCTACCATATTTGTTTTTCTGCATTATAAAGTTTATATGTTATGTAATGT
AACTTTCCTGATTAAATACTAACAGTACGAACACATTATCTTCGCTAAAT
AGTCAACGCTTCTTACGGAGAGTGATTAATATATACATGCTTTAATACCA
CCACCCCACCCCCTGCAAATTGGATCATACACAATGCCGTTTGGAAGTTA
TGAGGGGGCAGCCTCATTTCGTGGTAAAGGACTTGTATATGTGTCTAGGT
CAGAGGTCAAGTCACGCCAACTTTTGCTCCTTATTCGTGAACACATTTCA
GGGCTTGTAAGTCCTCATCGTGCGAAATTCTCGCCCGATATCATCGATAA
ATATATAATTAACATCAAAATTTGGCCGAATTGATCCTTTGGGATGTGTA
GAAGCACTCAAGAAAGCAGCGTACCTCCAATGAACTTTCAAGAAGAAGCG
ATCATGGCGTCCGAAGACAGCACTTGGCGTCGTGAGAAGAACGACCAGCC
CACATTTTTGAATTGGAAAAAAGATTAGAATAAAACAGGTTGTAAGCCAA
CCTATTGAATGGGGGGGGTGGTTAGGCCGAACGAATTTTGAATACCAAAG
GCAATCCCTAATTGCATTTTGGGTACAACGATTTGACATAAATTGTTTAA
CTTTGGAAGACAATGCTAGATTGAAAGCACCGCCCCTTTTGTATTCAAAT
TATTTTGGCCATTATAACCTTATACTACACATGAACTTTGAAAATGGAAA
CGATGGCCAAATCCTCAACAATATTCCCACCTTTTTACAAACAAGCTATA
TTATCCCAACGATAAGCTGATAAGGCGGGTTGTTATTAAGCCCCTCAACT
TAGAAGAACAAATAACATGGTGCAATGAAACGTGAGATCCCAGGGTAAAA
CTCCCTTTTTCCCAAGTGGATCAAAGAAGGAATCATTTATGTGAAAAATA
TATTCCCAAGAGGACAATTTATATTTATTAATAACGACCCAACCCTTTGT
AACAGACCCAGTACTTGAATTGAGCAAATTACTTTGTATCAAGCCATACC
CAGTTCTTAGAAAACTTCTGTCAAAAATGCTCTACAGTAAGATGACAGCC
CAATGCATCTTGTTGTCTTGCCCCAACATCTGCTTGAACCTACAAAAAAA
TTGAAACTCCTTTATACTGCTCTCAGTCAGAAAAAAAGTGGTGCCAAGCA
CCTCTTGAGTACCAACACGTGTAGTATTATTTTTAATTACTATTTCAAGT
TTTTTCTTGTATGTAATGATGTTACAATGTTTATTCTATGGACCTATTTG
TCACAGGTAGTTAGACTTAGCGGTAGAAATTCCCAAGCGCCTCTTGAGAA
CCAACCTGTCATGTTATATCATTTTACTTACTATTTTCATTGTTTTTGTA
TGTAATGATGTTATGATGCTTATTTTATGCACCTTTATTTGGGGTAGTTA
GTTTCTGTATACAACGATGTATCGCTACTCTGTGTTGTTACTTTCAAGTA
TTGCTCCAACTTTATTATGATGTTGTGATTTTAACTTAATTTTGTTCTTG
ATTGTAAAAATTGGTGGTGG Coding sequence (CDS) from alignment at Sc0000186:176346..182415+ >transcript:BL80166_cuf2 ID=transcript:BL80166_cuf2|Name=transcript:BL80166_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=636bp|location=Sequence derived from alignment at Sc0000186:176346..182415+ (Branchiostoma lanceolatum)
ATGAATCCGCATTGGCAACCAGTATACCAGCTGTGTTCACCATGCCAGGT
CAACTGGAACTACATCGCCCATACTGAGACTCTGGTGGAAGACTTTCACC
TTTTCTTTAAGAAAGCTGGTATTGTTGGACGAGATAATATTCTACCCAAA
ATTGAAGAAAGGGTCGGTAGTAAATTTTACCTTAAAGGCTTCATGGAGAT
ACCGTTAGAAGAAATACAACGCATTGGTAGAGTCTACAAAGCCGACTATG
ACATGTTCGGATATTCATTTCAAGAGGACCTGGGCAGTATATTCAGACGG
GTCGTTGGAGATATTTAAATGAATCCGCATTGGCAACCAGTATACCAGCT
GTGTTCACCATGCCAGGTCAACTGGAACTACATCGCCCATACTGAGACTC
TGGTGGAAGACTTTCACCTTTTCTTTAAGAAAGCTGGTATTGTTGGACGA
GATAATATTCTACCCAAAATTGAAGAAAGGGTCGGTAGTAAATTTTACCT
TAAAGGCTTCATGGAGATACCGTTAGAAGAAATACAACGCATTGGTAGAG
TCTACAAAGCCGACTATGACATGTTCGGATATTCATTTCAAGAGGACCTG
GGCAGTATATTCAGACGGGTCGTTGGAGATATTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000186 | genome | Sc0000186:176346..182415 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL80166_cuf2 |
| Biotype | protein_coding |
|
