transcript:BL80176_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL80176_cuf0
Unique Nametranscript:BL80176_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL80176_cuf0

>transcript:BL80176_cuf0-protein ID=transcript:BL80176_cuf0-protein|Name=transcript:BL80176_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=137bp
MDSSMPFKVPARWSLFVCGDFNVKLGRLSKADEEAGLGTCIGSYGIGKRN
NNGKALASFISANGLFATNTAFKHPARHRTTWTGHRADPKAGTASRASIA
IFNQIDFXPDTGQPGLDTGLTPRQGQHPELQLPYSTR
Run BLAST on NCBI

mRNA from alignment at Sc0000186:123996..125269+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL80176_cuf0 ID=transcript:BL80176_cuf0|Name=transcript:BL80176_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1274bp|location=Sequence derived from alignment at Sc0000186:123996..125269+ (Branchiostoma lanceolatum)
AATGACGACACCTTCACGAGGTCCTCCCCGTCAGTACCAACGCAGTTGGG
AAGCCAAGTCGTCAAGGATTGCGAGTTGACAACCGCGTGAAGAGGGCAAC
CTCTTAAATGTCTACCTTTCTTCAACCAAGAAGCTGTGTCCGGCACCCTC
GGGCACCGCCATCTTCTCAAGAGTTCGCCTTTGCAACATGGAATGTACGT
GGCTTGGCTTCAACCAGAAAGAGACAAACTCTCGGAACATTGACATTGCA
TGCATCCAGGAGACTAAAGTGACCAGTCACTCAGAGGAAACCCTCCAAAC
TGGTCACAAATTGATTCTCATGGAGCAAAAAGAAACCACTCATCATGGGT
TGGGGTTTGTGATTGGACCAAGGCTGCTGAACAATGTACTGAACTACGGA
CGCATTAATGACCGTATAGCTACCATTGATCTATCACTCCCACTTAGAAA
TGGCAAAACTACAAAATGCAGAATAGTCAATGTATATGGCCCAACATCAG
AAAGAGCCCAGGAGAACCCATCACTTGTAAATACACTCTACGATGGACTC
ATCTATGCCATTTAAAGTTCCAGCCAGATGGTCACTATTCGTATGCGGCG
ACTTCAATGTCAAATTAGGAAGACTCAGCAAAGCTGATGAAGAAGCAGGA
CTAGGCACGTGCATAGGGTCTTACGGAATAGGCAAGAGAAACAACAATGG
GAAAGCCTTGGCATCCTTTATCAGTGCCAATGGCCTGTTTGCAACAAACA
CAGCTTTCAAACACCCAGCCCGACACAGAACAACTTGGACTGGACACAGG
GCTGACCCCAAGGCAGGGACAGCATCCAGAGCTTCAATTGCCATATTCAA
CCAAATAGACTTCATNCCCGACACAGGACAACCTGGACTGGACACAGGGC
TGACCCCAAGGCAGGGGCAGCATCCAGAGCTTCAATTGCCATATTCAACC
AGATAGACTTCATACTATGCAAACTGAAAAGTAAACCATTACTTAAGGAT
TCCCGTACATACGGAGGAACAGACTTAAACTCAGACCATAAACCTGTAGT
CACACGCATCAGGATGGATAAAATCTACTTGGTCAACAAGAAAACACAGA
GACAGAAAGGCCCAACCAAGTACAACCTTGCAAAGCTCGTCAACGACCCT
AAAACACAAGAGCAGTACAAGAAAACCCTGCAAGAAAAAATAGCCAACAT
AAGATCTGACCAAAATCCTAACAAAGCATTGGACTCCTTACAACAATGCA
TTGAGCAGTCAGCTGCCAGCACCC

Coding sequence (CDS) from alignment at Sc0000186:123996..125269+

>transcript:BL80176_cuf0 ID=transcript:BL80176_cuf0|Name=transcript:BL80176_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=414bp|location=Sequence derived from alignment at Sc0000186:123996..125269+ (Branchiostoma lanceolatum)
ATGGACTCATCTATGCCATTTAAAGTTCCAGCCAGATGGTCACTATTCGT
ATGCGGCGACTTCAATGTCAAATTAGGAAGACTCAGCAAAGCTGATGAAG
AAGCAGGACTAGGCACGTGCATAGGGTCTTACGGAATAGGCAAGAGAAAC
AACAATGGGAAAGCCTTGGCATCCTTTATCAGTGCCAATGGCCTGTTTGC
AACAAACACAGCTTTCAAACACCCAGCCCGACACAGAACAACTTGGACTG
GACACAGGGCTGACCCCAAGGCAGGGACAGCATCCAGAGCTTCAATTGCC
ATATTCAACCAAATAGACTTCATNCCCGACACAGGACAACCTGGACTGGA
CACAGGGCTGACCCCAAGGCAGGGGCAGCATCCAGAGCTTCAATTGCCAT
ATTCAACCAGATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL80176gene:BL80176Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL80176_cuf0-E1BL80176_cuf0-E1-1564476830-375096Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL80176_cuf0transcript:BL80176_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000186genomeSc0000186:123996..125269 +
Properties
Property NameValue
Transcript idBL80176_cuf0
Biotypeprotein_coding