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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL80224_cuf0 >transcript:BL80224_cuf0-protein ID=transcript:BL80224_cuf0-protein|Name=transcript:BL80224_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=326bp
MADPPPLHGYIKGLSPIRAGKTGTNFFRFNFQEEHSTKKVICFSPVKRQL
ISDNENTTSPCKITKYQSSSNPSSDIIFTEHTEIQESEATFNITDSVTLP
SKIKDIQKTANNQEVIVEVKITSMEDTEVIPKGSKQFKKRECKATDETGS
IRFVVWEPDKLPLEKGRSYHLNVRVKTYNGRKYISTTPDTTVNEIEHLAI
PDEPTPELDREDIKGDIISLEIMCRYLRCNNCKKKVPDSAEKMVTCNNCN
MSQLSRKCPKDICLKLLVQTKEHKICLTCFANTIEYFMDKNPYDMSDDEL
KLEVLEAGENLTISFNPLTKICTSIN Run BLAST on NCBI mRNA from alignment at Sc0000523:104703..108451+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL80224_cuf0 ID=transcript:BL80224_cuf0|Name=transcript:BL80224_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3749bp|location=Sequence derived from alignment at Sc0000523:104703..108451+ (Branchiostoma lanceolatum)
TGGTCCATTCTTGACATAAACTGTCGCTCACATTCCCCAACCACATTCAT
ATGCGCAGGCGGCAACGTGACTTAAACAGTGCCCCTCCTACACAGCGAGA
CTGTGTTATTGGGACTGTATCAGTGGTGTTTTGTAAAATTAGATTTAGTT
ACATGTACATAGGTTATAGTGAACTCCTTTCTGCGTTCAATTTTCTGAGG
GTCGCACTATATCACTACCTCAGTAAACAAAGAGCTGTCAAACACGTCTT
GGTCTATAATTAAAGTGTCGCTCAGATTCTCCGGCCACATTGTCACCATT
TGCATGCTGCACTTGTATCCAATGATCGTGCTTCATGCCATGACATGCGG
TAACACACTAGACTTCTTGCACCTTTCTTAATTTCTGCTAGGAGGCGCAA
TCACACACGAAACTAGTCAAACAGCTTTTTCCACCCCGAAATCGGACCGG
GCAGCTGTTTCCGCCAATTGGACCGGACAGCTAATTCCAACAACCCCAGC
CATACACCCTTCAGTCAAGCCAGCCAGTCTATGGCTGACATTATCAGTAG
CACATATAACGTTAACGTTATCAAATTTATATCACTGAAAAATTCAAAAG
TTCACACCCTTTAATAACATTCTTGAACAAATTTAAATTCAATAACTGGA
AACAAACATTCACAAATGCAAATCTAACCATTGTAAACTTCTCCAAAAGC
ACTTGCTTGTACAACAATATTTATCTCATTTTTTTTATTTCTCATCCACC
AGTACACAGCTTCTTGTCACCATGGCTGACCCACCTCCACTTCATGGCTA
TATCAAGGGTCTTTCTCCCATTAGAGCCGGAAAGACAGGCACCAATTTCT
TCAGATTTAACTTCCAAGAAGAACACAGCACCAAGAAAGTAATATGTTTT
TCTCCAGTGAAGAGACAGCTGATTTCCGACAATGAAAACACAACATCACC
TTGTAAGATCACTAAATATCAATCATCATCCAATCCAAGCAGCGACATAA
TCTTCACTGAACACACTGAAATCCAAGAATCAGAGGCAACCTTCAACATC
ACAGACTCAGTAACACTACCATCTAAAATCAAGGACATCCAAAAAACAGC
CAACAACCAAGAAGTCATAGTAGAAGTCAAGATAACATCAATGGAAGACA
CCGAAGTTATCCCCAAAGGCTCCAAACAGTTCAAGAAAAGAGAATGCAAG
GCTACGGACGAAACCGGTTCCATCAGGTTCGTGGTATGGGAACCAGACAA
ACTGCCTTTGGAAAAAGGTCGCAGCTACCACCTCAATGTTCGTGTCAAAA
CTTACAATGGCAGAAAGTACATCTCAACGACACCTGACACAACAGTCAAT
GAAATAGAACACCTTGCCATTCCAGATGAGCCAACGCCAGAACTTGACAG
GGAAGATATCAAGGGAGATATCATCTCCTTAGAAATCATGTGCAGATACC
TCAGGTGTAATAACTGCAAAAAGAAAGTTCCTGACTCCGCAGAAAAAATG
GTAACCTGCAACAATTGCAACATGTCACAACTATCACGAAAATGTCCAAA
AGACATCTGCCTCAAGTTGCTTGTACAAACAAAAGAACACAAAATCTGCC
TCACATGTTTTGCTAACACAATAGAATACTTCATGGACAAGAACCCGTAT
GATATGTCAGATGATGAGTTAAAGCTCGAAGTGCTAGAAGCTGGGGAAAA
TCTGACGATTTCATTCAATCCCTTGACAAAGATATGCACATCTATCAACT
AGTAAAACTACAGTTTACTACGTATGTTTCTAACTCAGTTGTGCCTCAGA
ATTTTCTTTTTTTGTAACATCTAATGATGTATGATGATTCAACAGCTGTT
TAACTGCATTTCAAAGATTATGATACGGGGGAAAACATTTTCAGTTTAGT
CAAACCAAACAGTTCATGGTTAAAGGCTAGCCTAGAATCCAACCCTATTA
TAGCTCCCGAGTCTCTCTACTATTTGCAGTGGAGAGACTCCGGAGCTATA
ATAGGTTTGGATTCCAGACTAGTTAAACGCACCTTTACTTGTTAACTTGT
CCAGGTTAGTGTTAGTTTATTACTTAACGTATAAGTTCACCATTTGAGTT
CTTGCTGACAGCAAAACCTTCTGAACAAATGCTTGTGTACAGGACAAGAT
GCATATATAAAACCAGTAGAAAAGGCTTGTTCTTGCCTACGTTTCTGACT
AAGTTGTGCCTCACAATTTTGTTTTTTCATACATATACATGTATGATAAT
TGAACAGCTGTATAACTGCATTTTTAAGATTATGATACAGTGAAAAACAT
TTTCAGTAAAGTCAAACCAAACAATTAATGGTTGAAGGCACCTAAACTTG
TTAACTTGTCCAGGTTAGTGTTAGTTTATTACTTAACGTATAAGTTCACC
ATTTGAGTTCTTGCTGACAGCAAAACCTTCTGAACAAATGCTTGTGTACA
GGACAAGATGCATATATAAAGCCAGTAGAAAAGGCTTGTTCTTGCCTACG
TTTTTGACTAAGTTGTGCCTCAGAATTTTGTTTGTTTTTTCATACATATA
CATGCATCATAATTGAACAGCTGTATAATAGCATTTTTAAGATTATGATA
CAGGGAAAAACATTTTCAGTTAAGTCAAACCAAACAATTAATGGTTGAAG
GCACCTAAACTTGTTAACTTGTCCAAGTTAGTGTTAGTTTATTACTTAAC
GTATAAGTTCACCGTTTGAGTTCTTGCTGACAGTGAAGCCTTGTGAACAA
ATGCTTGTGTACAGGACGAGATGCATATATAAAGCCAGTAGAAAAGGCTT
GTTCTTGCCTATGTTTGTGACTTAGGCCACAGCAAGTAATTTTTATGGAT
GACATCAGCGCGCTCATTAATTTTCGCCTGATTTCGAAATAAAAAACAAG
AAATTTCATTGCCCTCCGACGGTGGTCAACATGCCAAAAATGGGCAAATA
TGTCGTAAACGTTGAGGTGTTTCATTGCATATGAATACACAGTGTAGCCC
ATGATGGTATGACAAGCTGTTTTCTGCGTTTGTTCTAGTTAATTGAGCTG
CACATCTTCAAGAACAGTTTAATGTTGACAGTCTAAGGTGTTTCATTGCA
TATGAATACCCAGTGTGGTTCCTGCCCATAATGGTATGATAACAAGCTGT
TTTCTGCATTTGTTCTAGCAAGGACATTATATAAACAATGGGGGGGGGTC
TAGTTAATTGAGCTGTATACACAAGGTGTTTCATCACATATGAATACCCA
GTGTAGTTGCTTCAGATGATGGTACAACAAGATCTTTTCTGCATTTGTTG
TAGTTAGTCTATTGAGATGTATACACATCTACAAGGACATGTTTACTGTT
GAATCAAGGAGGTTTTATATTATATATGAAACCTCATTGGTTGAATACAG
GAATAAAAGACCTGTTGGTCATGATATCATACTAGTACGCCTCAATTCTT
GTTTAACAAGANCAGGAATAAAAGACCTGTTGGTCATGATATCATACTAG
TATTTCGTCGCCTCAATTCTTGTTTAACAATATTTATGACCTCAAAATTT
GAAAATATAGGAATCTTGTTTTTTTTGCCCGCCTTGTTTTTTTTTCGCCC
TATCTCATTAATTTTGGAGTCTGCGGAGGATGTCATCCATAAAATTTACT
TGCTGTGGCCTTAGTTGTGCCTCAGAATTTTGTTTGTTTTTTCATACATG
TACATGTATGATAATTGAACTGCTGTATAACTGCATTTTTAAGATTATG Coding sequence (CDS) from alignment at Sc0000523:104703..108451+ >transcript:BL80224_cuf0 ID=transcript:BL80224_cuf0|Name=transcript:BL80224_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=981bp|location=Sequence derived from alignment at Sc0000523:104703..108451+ (Branchiostoma lanceolatum)
ATGGCTGACCCACCTCCACTTCATGGCTATATCAAGGGTCTTTCTCCCAT
TAGAGCCGGAAAGACAGGCACCAATTTCTTCAGATTTAACTTCCAAGAAG
AACACAGCACCAAGAAAGTAATATGTTTTTCTCCAGTGAAGAGACAGCTG
ATTTCCGACAATGAAAACACAACATCACCTTGTAAGATCACTAAATATCA
ATCATCATCCAATCCAAGCAGCGACATAATCTTCACTGAACACACTGAAA
TCCAAGAATCAGAGGCAACCTTCAACATCACAGACTCAGTAACACTACCA
TCTAAAATCAAGGACATCCAAAAAACAGCCAACAACCAAGAAGTCATAGT
AGAAGTCAAGATAACATCAATGGAAGACACCGAAGTTATCCCCAAAGGCT
CCAAACAGTTCAAGAAAAGAGAATGCAAGGCTACGGACGAAACCGGTTCC
ATCAGGTTCGTGGTATGGGAACCAGACAAACTGCCTTTGGAAAAAGGTCG
CAGCTACCACCTCAATGTTCGTGTCAAAACTTACAATGGCAGAAAGTACA
TCTCAACGACACCTGACACAACAGTCAATGAAATAGAACACCTTGCCATT
CCAGATGAGCCAACGCCAGAACTTGACAGGGAAGATATCAAGGGAGATAT
CATCTCCTTAGAAATCATGTGCAGATACCTCAGGTGTAATAACTGCAAAA
AGAAAGTTCCTGACTCCGCAGAAAAAATGGTAACCTGCAACAATTGCAAC
ATGTCACAACTATCACGAAAATGTCCAAAAGACATCTGCCTCAAGTTGCT
TGTACAAACAAAAGAACACAAAATCTGCCTCACATGTTTTGCTAACACAA
TAGAATACTTCATGGACAAGAACCCGTATGATATGTCAGATGATGAGTTA
AAGCTCGAAGTGCTAGAAGCTGGGGAAAATCTGACGATTTCATTCAATCC
CTTGACAAAGATATGCACATCTATCAACTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000523 | genome | Sc0000523:104703..108451 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL80224_cuf0 |
| Biotype | protein_coding |
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