transcript:BL80246_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL80246_cuf0
Unique Nametranscript:BL80246_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL80246_cuf0

>transcript:BL80246_cuf0-protein ID=transcript:BL80246_cuf0-protein|Name=transcript:BL80246_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=256bp
SIKSLNVFHANVNSIVAGSKMDELSSLAVKFKLDIIAITETWLGSTVDSE
AISLDGFQTPVRRDRNRHGGGVLIFVSDHIAFRRRCDLESLTDECIWLEL
FPGTFRVLFSAYYRPPGQNLETVDSFIDSFQNSVFTAASLNVDTIIITGD
FNAKHGAWWHLDPNSSAGSKLFQSSQMLNLTQMITEPTCDLSRSPSLIDL
LFTDASSRVQSTSVLSPLSGCHHCPIIANFDFVIKPPPPYVRTVWDFSKI
DYASLV
Run BLAST on NCBI

mRNA from alignment at Sc0000039:930330..931098+

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL80246_cuf0 ID=transcript:BL80246_cuf0|Name=transcript:BL80246_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=769bp|location=Sequence derived from alignment at Sc0000039:930330..931098+ (Branchiostoma lanceolatum)
TCAATCAAATCCTTAAATGTTTTTCATGCAAATGTAAACAGTATTGTTGC
CGGTTCAAAGATGGATGAACTGTCTTCTTTGGCAGTTAAGTTTAAGCTTG
ACATAATTGCTATCACGGAAACGTGGCTTGGTAGCACTGTCGATTCTGAA
GCTATTTCGCTTGACGGTTTTCAAACTCCAGTTCGTCGGGATAGAAACAG
ACACGGTGGAGGTGTTTTGATTTTTGTATCTGATCATATAGCCTTTAGAC
GTCGCTGTGATCTGGAATCCTTGACTGATGAGTGCATCTGGCTTGAACTT
TTCCCCGGCACATTCCGTGTTCTCTTTTCAGCCTATTACAGGCCACCTGG
ACAAAACTTAGAAACCGTTGATAGTTTTATCGACTCCTTCCAAAATTCTG
TCTTCACAGCTGCTTCTTTAAATGTTGACACTATTATCATTACCGGTGAT
TTTAATGCTAAGCACGGAGCGTGGTGGCATCTGGACCCAAATTCCTCAGC
TGGCTCAAAACTGTTCCAGTCATCTCAGATGTTAAATCTTACCCAAATGA
TTACTGAACCCACGTGCGATCTATCTCGCTCACCCTCACTTATTGATCTA
CTATTTACTGACGCGTCTAGTCGTGTTCAATCCACGTCTGTTCTTTCACC
CCTGTCTGGTTGCCACCACTGCCCTATTATTGCCAATTTCGACTTTGTTA
TCAAACCCCCTCCACCATACGTCCGCACCGTCTGGGACTTCTCAAAAATT
GACTATGCCTCACTTGTAG

Coding sequence (CDS) from alignment at Sc0000039:930330..931098+

>transcript:BL80246_cuf0 ID=transcript:BL80246_cuf0|Name=transcript:BL80246_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=768bp|location=Sequence derived from alignment at Sc0000039:930330..931098+ (Branchiostoma lanceolatum)
TCAATCAAATCCTTAAATGTTTTTCATGCAAATGTAAACAGTATTGTTGC
CGGTTCAAAGATGGATGAACTGTCTTCTTTGGCAGTTAAGTTTAAGCTTG
ACATAATTGCTATCACGGAAACGTGGCTTGGTAGCACTGTCGATTCTGAA
GCTATTTCGCTTGACGGTTTTCAAACTCCAGTTCGTCGGGATAGAAACAG
ACACGGTGGAGGTGTTTTGATTTTTGTATCTGATCATATAGCCTTTAGAC
GTCGCTGTGATCTGGAATCCTTGACTGATGAGTGCATCTGGCTTGAACTT
TTCCCCGGCACATTCCGTGTTCTCTTTTCAGCCTATTACAGGCCACCTGG
ACAAAACTTAGAAACCGTTGATAGTTTTATCGACTCCTTCCAAAATTCTG
TCTTCACAGCTGCTTCTTTAAATGTTGACACTATTATCATTACCGGTGAT
TTTAATGCTAAGCACGGAGCGTGGTGGCATCTGGACCCAAATTCCTCAGC
TGGCTCAAAACTGTTCCAGTCATCTCAGATGTTAAATCTTACCCAAATGA
TTACTGAACCCACGTGCGATCTATCTCGCTCACCCTCACTTATTGATCTA
CTATTTACTGACGCGTCTAGTCGTGTTCAATCCACGTCTGTTCTTTCACC
CCTGTCTGGTTGCCACCACTGCCCTATTATTGCCAATTTCGACTTTGTTA
TCAAACCCCCTCCACCATACGTCCGCACCGTCTGGGACTTCTCAAAAATT
GACTATGCCTCACTTGTA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL80246gene:BL80246Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL80246_cuf0-E1BL80246_cuf0-E1-1564476830-200443Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL80246_cuf0transcript:BL80246_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000039genomeSc0000039:930330..931098 +
Properties
Property NameValue
Transcript idBL80246_cuf0
Biotypeprotein_coding