|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL82562_cuf2 >transcript:BL82562_cuf2-protein ID=transcript:BL82562_cuf2-protein|Name=transcript:BL82562_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=185bp
MSYWRFTTISRPTGKFHFNRLFYVTLWEKTHLFHFYLITVRWGKYLSHNY
CQQWNTLSIMPRSNSISVEQRRRKRKITQLTPEAAEAQRAYNRSYMQEYR
SKETPNATDKRLAASREHMQKRRKEEKPDATNKRRAAIRAKMQQHRKYEQ
SKEITIDKCATVYNIDRTSLRKVNTIWRRYEVVEL Run BLAST on NCBI mRNA from alignment at Sc0000007:1087958..1090443+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL82562_cuf2 ID=transcript:BL82562_cuf2|Name=transcript:BL82562_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2486bp|location=Sequence derived from alignment at Sc0000007:1087958..1090443+ (Branchiostoma lanceolatum)
GACCGAAATGGCCTTGGAAAAAAACCAAGTAGACGTAAGGTGATCAATAA
TGCAGGGACTCGTTCCCTTCGATAAATGCCAAGGATGTCCTATTGCAGGT
GTGTGTTGCTTTATGAAAGGTGAATACACCTGAATATGTATTATTCTAAT
GATGGCCTAATTTGCATAATCTATGCAGAAACTTCATATTCCCTTTGTGT
ACATGCTACAGATGTCATATTGGATGTGTATGTAGCTATAGGAAATGTAA
ATACAAAGGCAAGGTCATTATGCTAATGAGCCTCATTTGCATAATTTATG
CATAGACTTCATATTTCCCTTACGGCATATGTCATAGATGTAATATTGGA
GGTGTAGGTTGCTTCATGAAAGGTGAATACAACAGGAGGAGTATTATGCT
CATGAGGACTATGCAGAAATTTATTTCCCCTTACGGCTTTTGCTACAGAT
GTCATATTGGAGGTTTACAACTATTTCACGACCCACAGGGAAATTCCATT
TCAATCGTCTTTTCTATGTAACACTATGGGAAAAAACACACTTATTTCAT
TTTTATTTGATTACAGTCCGTTGGGGGAAGTACCTGAGTCACAACTATTG
CCAGCAATGGAATACATTGTCAATCATGCCTCGATCAAATTCCATCAGTG
TGGAACAAAGAAGAAGGAAGAGAAAAATAACACAATTAACACCAGAGGCT
GCCGAGGCACAACGGGCATACAACAGGTCGTACATGCAGGAGTACCGGTC
AAAAGAGACACCAAATGCCACTGACAAACGACTTGCAGCTAGTAGGGAGC
ACATGCAGAAGCGCAGAAAAGAAGAGAAGCCAGATGCCACTAACAAACGA
CGTGCAGCTATTAGAGCTAAAATGCAACAACATAGAAAGTATGAACAAAG
CAAAGAAATAACAATTGACAAATGTGCCACTGTTTATAACATTGATCGTA
CGTCTCTACGAAAAGTTAACACCATTTGGCGAAGGTATGAGGTCGTGGAA
CTCTAGTCTGTAATCATTTCCCTTAATCCGCCATCCTTACCCTTAATCCG
TCACCTTAGTCCTTAATCCGTTACCCTTTTCCTTAATCTGTAATCATTCC
CCTTAATCCGCCATCATTACCCTTTATCCGTCACCTTAGTCCTTAATCCG
TTACCCTTTCTCTTAATCTGTACTCATTTCCATTAATCCGCCATCCTTAC
CCTTAATCTGTCACTTTATCCCTTAATCCGTCACCCTAGCCCCTTAATCC
ATTGCCCCTGACCTTCATCATCCATCCTTGCCCCTAATCCATCACCATAA
CCCTTAATCTGTCACAAAAGCCTTGATCCCTCACAGTGGTTGCCCCTCAA
TCAGTCACCCTTGCCCCTAGTCCGTCGCCATAACCCTTAACCCGTCACCA
TAGCCGTTAATCTGTCACCCGATAACCTATTCCGTCGTCACCTTTTCCCT
TAATCTGACATCCTTACCCTTAATCCGTCACCATAACCTTAATCCGTAAC
CCTAGCCCTTAATCCGTTACCCTTGCCCTTAATCCATCGTCAATGTTACA
TCTTGTTCTGACCAAATTTTAGGTCTTTTAAGCAATATGGATATAGACCA
CAAATGGTATGACATGTTAGCAAAGTTGGGATGGTGCCATTGTGATGGGA
ACTTTGACTGGGTATCAATTTTAAGCCCTGTTTCCCAGGCTCTGGTTAAT
GACTTCTCCAGGCACAGCAACATGGATGCACCCATGGGAGTATCAGTTAC
AGGGTACTCGTCTGGTGGGCTCAGTCTAGTACCGTGGCCACAGTGTCTAG
ACGTATGAGAACAAAGGGCATTTCTTGTGTTAGAAAACAACTCATTTCTA
GCGATAATATGGAGATTTCTAACCTCTAATCGAAAGTTGTGACAACATGG
TGAGCAAGAAGGGGTGTATCACCCCCATGTCAGCAGTGGAAACAACAACG
GGGAAGCACGGCCAGAAGAGACTGAAGAATATGGACTGGTTGAAAATAGC
AGCACCAGACGTTTGTTCATTAATATCCACGGCAGGAAAAGTTGTTGTAC
GTTCCGCAGACAGGACTCGACTATGGAAATCTAGATTCTGAGACTGGAAG
GACAAATAACACCAGAGTCGATCTGTACAGAACCAAGGTAAGAGGCGTCT
GTTTCTGTTTTTGTGCAGGTAGGTCTTTTCAGTTTTTATGTTAACGTTGC
GCTTTCGTGGTCATTTCAGATACCTTTCATGTCGGGGTAGAGATTTCGGC
AAGTTGCCATTTTCGAAACCATCTCGACGTATGTTTGATATTCAGAATGG
CTGTTAAAAGTGTTATTGAAACTTTTTAGGTTTGATGAAAAATTAGCAAT
TCGTTTATGGTAGAGTCGTAACGGAGACTACCTTCAAGTTAGTCCATGGT
AACTTAACTTAGCAGCCTAGAATTTAGAAATACGTCGCATTCATCCACGT
TTAAAAATCATGTGCCATACAAACGTTGGAATTCCA Coding sequence (CDS) from alignment at Sc0000007:1087958..1090443+ >transcript:BL82562_cuf2 ID=transcript:BL82562_cuf2|Name=transcript:BL82562_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=558bp|location=Sequence derived from alignment at Sc0000007:1087958..1090443+ (Branchiostoma lanceolatum)
ATGTCATATTGGAGGTTTACAACTATTTCACGACCCACAGGGAAATTCCA
TTTCAATCGTCTTTTCTATGTAACACTATGGGAAAAAACACACTTATTTC
ATTTTTATTTGATTACAGTCCGTTGGGGGAAGTACCTGAGTCACAACTAT
TGCCAGCAATGGAATACATTGTCAATCATGCCTCGATCAAATTCCATCAG
TGTGGAACAAAGAAGAAGGAAGAGAAAAATAACACAATTAACACCAGAGG
CTGCCGAGGCACAACGGGCATACAACAGGTCGTACATGCAGGAGTACCGG
TCAAAAGAGACACCAAATGCCACTGACAAACGACTTGCAGCTAGTAGGGA
GCACATGCAGAAGCGCAGAAAAGAAGAGAAGCCAGATGCCACTAACAAAC
GACGTGCAGCTATTAGAGCTAAAATGCAACAACATAGAAAGTATGAACAA
AGCAAAGAAATAACAATTGACAAATGTGCCACTGTTTATAACATTGATCG
TACGTCTCTACGAAAAGTTAACACCATTTGGCGAAGGTATGAGGTCGTGG
AACTCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000007 | genome | Sc0000007:1087958..1090443 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL82562_cuf2 |
| Biotype | protein_coding |
|
