|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL82633_cuf0 >transcript:BL82633_cuf0-protein ID=transcript:BL82633_cuf0-protein|Name=transcript:BL82633_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=220bp
MDTGDIVIRNLRQEESNEIREMLISGIFTGVLTLRNAFRLTRNSENCVWM
AILSVFLYILTKSVIWAALVPLILAFLTSFVCLWSAFQQLISHSQLELQN
VHAWYNNTKPNSKFWVAVYRQNVIGSVALHRASETVAELKRMSVLPMYRR
QGVGTLLLKHLEQHCKSAGIRKIFMTTDELGSGVHLYQKHGYVITSTFNR
RILPLPGALKTEWRLSKKLQ Run BLAST on NCBI mRNA from alignment at Sc0000065:769052..773237- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL82633_cuf0 ID=transcript:BL82633_cuf0|Name=transcript:BL82633_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4186bp|location=Sequence derived from alignment at Sc0000065:769052..773237- (Branchiostoma lanceolatum)
GGACGGGATTGGTGTCGCCTCACGTTGGGTATCTGACATCCAGGTAATGA
TAAGGCACGCTTCCTTACTTAGATATTTGGCATGTCAGGAGGAACAAGTG
TAAATGCAATATATTCACGTGAATACATTGTCTACTGATAGTTTTAGGAA
TATTGTTAAAAAAGGCAATTGGCCATGGCGTCACAGGGATGAGAGAGGGG
TCAACGGTGGTTCTTGGTGTGGCAAGAGGCTACGTCTGGGTATATGTGAA
AAAAAAAGCAAAATTGATATTTCGTATTTCATTCTCAAGGCTATTTTTAC
CATCGAGGCTAGTGACAAGCTCATTTGCATAATTTATACAGAAACTTGTA
TTTCTCTTACGGTAAGTGCTACGGATGTCATATTTGAGGTGTAGGTACCT
TTATGAAAGGTGGATACTTAGACTTAGACTTAGATCCTCCCGTGCCAAGT
GGCACATCGGGCAGCAAGTTTCCTCCATTCAGTGCGGTTTTGGGCCAGGA
CTTCTGATCCTTTCATGGTTATCCCCAGGTGGTCAAGGTCCTTTTGTAGC
ATGTGTCTCCATGTAAGTTTGGGTCTTCCCCTTTTTCTTTTTCCTTTGTC
GGGTTCCATTTTAGCTCCATTTTGCGTGTCGTTCCACAGGCATTCTAAAC
AAATGACCTGTATATTTGACTCTTCTTTCCGCGATGGTGGTACTAAGGGG
TTTGGTCCCACTCCTGTTGTAAACTTCTTCATTTTTTTAATTCTATCTTT
ATAAAGGTGGATACACCTGGATGTAAATCATGCTAATGAGAAGCTCATTT
GCATATTGTATGCAGAAACGTGTATTTCCCTTACGGTAAATCCTACGGAT
ACCACATTTAAGGTGTAGGTACCTTTAGGAAAAGTGAATACACCTGAGTG
TGCATTATGCCTCATTAGCATAAGTTATTCAGAAAGTTGTATTTCATTTA
CGGTAAATACTATGGATGTCATATTTAATATGTAGGTACCTTTAGGAAAG
GTGAATACACCTGGATGCGGGTTATGCTAATGAAGACCTCATTTTCATAA
TGTATGCAGAAACATGTATTTTCCCTCACGGTAAATGCTATGGATTTCAT
ATTTGAGGTGTAGGTACCTTTAGGAAAGGTGAATACGCCTGGATTAGTTA
TGCTGATGAGGACCTTATTTGCATAATTTATGCAGGAACGTACATTTCCC
GTATGGATAATGCTACGAATGTCATGTTGGAGGTGTAGGTATCTTTTGGG
GAAGTTTAATACATTCTGCTAATGAGGACCTTATTCGCATAATTGATGCA
GAAAATTCCTATGTCTTTTTTGACCAATGGTAGAGATTTTCTATTAAAAA
CATAGGTAGCTTTAAGGTTCCGGGTCGGAGTTCGAATCTGACCGGGGTTG
GGTCATGAACCGGTAATCTGCCGGAAGTGCGTGGTCGTCACCCTGATTTC
TGCCCGAGATTGCTTGGTGATGGTTTTAGCTGTGCATAAATATTTCGAAT
CTTCTGAAAAGCCCGTGAGTTGTATTATTTTTGGGCGCGGTGCAGTTGGT
TCGCTATCGAAGCCTTTTTTGTATTAGTCCGCGGCAACGGTGATGCGGTT
TTCTCGCCTAATGACCCAAATAGCATCGTTTTTAATGCATTTTCACCGAA
TTTGCGTCATCGGAGATTGCGAAAAAGTTATCACATGACTTTTTTATTTT
TTTCATTTTTGAGAGACACTATTTACTAAGCTTTCTCAGCATATATGCCG
TGACCCCAGGAAAACTCGTTTTTTCCGAGCAGGTTCGATCAAAAAAGTTT
TAAAAAATGCTATTTTTCGGGTGCAAAATTTACATTTTACTATGGTTTCT
ACCCAAAATAAAGGGAGAACGGACAATACCGATGAATACATCGGAAAACA
GCAGAAAACCGCTTTTCGACCATGTGATTACATTTTCCGTCCTACTTTTC
TCGGCGGAATTGTAGCCCGTCGACCTGAGGGTGTCGGCCTACATACGAAA
TCGCAAAAAAACTCCGGTCCGAGACCTTAAAAGGACGGCAGCGGCTACGT
CGATGACGTCATAGATGACGTTATTTCGACGCATTCGNAAACATTCCTTA
AGAATGGTGAAAACAATGGAATGTGTTTTATGCTAATGAGGACCTTATTC
AAGCTTCAGTTATTAATGAGAGGGAAATATCCCTTATTTTCTCGAAAATG
TTGCATTTCTAGTTTCATTGTATCTTAACATGTTTTCTCTGGACAGCCCC
ATACTTCTTGCGCTATTAACGGATTATTCTCTCAGCCTTTTTTCTTGGAC
TCCTGGCTTTTTCTTGCCAATGCTTTTTAGAAGTAATAGAAGGCCTGTGC
AGATATAGACAGTGAACAATTGATGTCTTTTTTGTTTCCCCCCTCTGAAT
TTAGGACTTGCAGGCTTGAGAATACAGAGACCATTGAATGATCATCAAAA
ACAACTGCTACATCAACACCGCAACATCATGGACACAGGTGATATTGTCA
TAAGAAATCTTCGTCAGGAGGAATCCAACGAGATTCGAGAAATGCTTATT
TCTGGAATTTTTACAGGAGTATTGACTCTCCGCAATGCATTTAGGCTGAC
CAGGAACTCTGAAAACTGTGTATGGATGGCAATTCTTTCAGTATTCCTCT
ACATCCTTACAAAATCTGTGATTTGGGCCGCTCTAGTGCCTCTAATATTG
GCCTTCCTGACATCCTTTGTTTGTCTATGGAGTGCATTTCAGCAGCTCAT
ATCTCATTCGCAGTTAGAGCTACAAAACGTACATGCATGGTACAACAACA
CAAAACCTAACAGCAAATTCTGGGTGGCAGTCTACCGTCAAAATGTCATC
GGCTCGGTTGCCCTGCATAGGGCGTCCGAGACGGTGGCCGAGCTAAAACG
GATGAGCGTACTCCCCATGTATCGACGACAAGGAGTTGGGACTTTACTAC
TGAAACATCTTGAACAACACTGTAAGTCTGCTGGTATTCGGAAGATTTTC
ATGACCACTGACGAGCTCGGGTCCGGAGTGCATCTATACCAAAAACACGG
CTACGTGATTACTTCAACGTTTAACCGAAGGATCTTACCACTTCCAGGAG
CCTTGAAAACAGAGTGGAGGCTATCAAAGAAACTTCAGTGAGAATGTCGG
AAAGGGAACAATTTGCTTTATTCATTGCACTGTATGCATATATAGCTCAT
AACGAACCAAACTTCCAGTTCCACTATGTTATTCCTTTGTTAACGACGAT
TTTAAATTTCACATTAACTATACAAAGTATGCCTTAATTACCTACGGAAA
AAATGAGGTTTTTTTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCATGATATTTGGTATGTGGGAAGTGTTGGGAAGACGATG
GTCAATGTCATTTTCTAACCCCTGTTGTGTGCCCTTGGTACTGCAGCAGG
ACTTTTGGTCTTTGTATATTTTGTCCTGGCCATGCTATGATCTTAATTTT
GGTGGCAGATAGCTTTTGGTGTCAGGAAGAAGTGTAGGTTTTGGCCCCCT
ACCTCTCACTCATCTCCGCCGCTTTTCAACCTCAACTTCGATTACCCCCA
AATAACCCCGCTAGGGGCAAAGTAGGGAGGGGGGGGAGGTCCCAGGCTTA
GGCGGGCAGGCCTCCAGCCTGGCGCGGAAAGACTCAACGGTGGGAGCCGT
AACAACCGAGCCAGGCAGGGCGTTCCACTCGGGTATGGTGCGGGGGAAGA
ATGAATGTTTGTAAGAGTCTGTCCGGGCGTAAAGTGGTTGACATTTGAGC
GTGTGGCTCCCCCGGGTGCGCCCCTGAGCTGGTTTCAGTGGACTATCTGT
GTTAATTATCTTCGCCGAGTACTATAGTACTCGGGGTAGATTATGTTTTC
GGTTGAGCCAGCTGTTTGGTGGGTCTGTATGTATGTCAAGAGCATAACTC
AAGAAACCTTTGATGAATCTTTATGATTTTTAGTAGGTGTGTAGTGGTTG
TGCAAAGGAAGGTCAAGTTCAAAAATGGTTTACCTTGCGTTTTTCAACAG
TACTGCAGCGGACTTTTAATTTTTTTGCGTTTGTATGTAGGCGAAAAAAG
TGACGGAAACGTTGATGGATCTTCATGATTTTTTGCAGGTGTGTAGATGT
TGTGGAAACAGAGATCAAGTTCAAAAATGGTTCTCC Coding sequence (CDS) from alignment at Sc0000065:769052..773237- >transcript:BL82633_cuf0 ID=transcript:BL82633_cuf0|Name=transcript:BL82633_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=663bp|location=Sequence derived from alignment at Sc0000065:769052..773237- (Branchiostoma lanceolatum)
ATGGACACAGGTGATATTGTCATAAGAAATCTTCGTCAGGAGGAATCCAA
CGAGATTCGAGAAATGCTTATTTCTGGAATTTTTACAGGAGTATTGACTC
TCCGCAATGCATTTAGGCTGACCAGGAACTCTGAAAACTGTGTATGGATG
GCAATTCTTTCAGTATTCCTCTACATCCTTACAAAATCTGTGATTTGGGC
CGCTCTAGTGCCTCTAATATTGGCCTTCCTGACATCCTTTGTTTGTCTAT
GGAGTGCATTTCAGCAGCTCATATCTCATTCGCAGTTAGAGCTACAAAAC
GTACATGCATGGTACAACAACACAAAACCTAACAGCAAATTCTGGGTGGC
AGTCTACCGTCAAAATGTCATCGGCTCGGTTGCCCTGCATAGGGCGTCCG
AGACGGTGGCCGAGCTAAAACGGATGAGCGTACTCCCCATGTATCGACGA
CAAGGAGTTGGGACTTTACTACTGAAACATCTTGAACAACACTGTAAGTC
TGCTGGTATTCGGAAGATTTTCATGACCACTGACGAGCTCGGGTCCGGAG
TGCATCTATACCAAAAACACGGCTACGTGATTACTTCAACGTTTAACCGA
AGGATCTTACCACTTCCAGGAGCCTTGAAAACAGAGTGGAGGCTATCAAA
GAAACTTCAGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000065 | genome | Sc0000065:769052..773237 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL82633_cuf0 |
| Biotype | protein_coding |
|
