transcript:BL84530_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL84530_cuf0
Unique Nametranscript:BL84530_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL84530_cuf0

>transcript:BL84530_cuf0-protein ID=transcript:BL84530_cuf0-protein|Name=transcript:BL84530_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=101bp
MCNISDKEKTWTAILLPHDALFPPLAAPVTNQRRVMRSCDEDYVTREMHL
GAAEFKQYGGGRRRNEMISQYNHLIQRCILRHKCRETNFYFISKCVLHVC
L
Run BLAST on NCBI

mRNA from alignment at Sc0000010:4661266..4662078-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL84530_cuf0 ID=transcript:BL84530_cuf0|Name=transcript:BL84530_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=813bp|location=Sequence derived from alignment at Sc0000010:4661266..4662078- (Branchiostoma lanceolatum)
GGTGTTTTCAACCGCGCGACTATTTCAGTGTGTCGGGCCGGCCATAATTT
CGTACCCCACGCCGCTTGTACTACGCCGCTTGCGACGTCAATAATTTCCT
AACCACCCACACGGCTGCAAATATGGGCACATCGTGCGTATCTGTAGATA
TTATTTATCAAAAACGTAATAGCTAGAATCTGAAATGTTCCAGAGTTCGC
TTCAGCGGGAGTTTTGTTTTTGTTTTGACGGATAAAACGCGAAAACCCAC
GCCGCTTTCGGCACACTTCCGGGTTCATTGATCGCTAAAATTACGCAAAA
GCCACCATCAATCCGCAAATAAATGTATGCTTTCCCGAAAACATCTTTTG
GTTTTGCATTTTCTTCACCATAATGTTGCTATGTAGTCGATAAAACCGCG
TTTTTATTGCGTTTTCATGTGTAACATTTCAGACAAAGAAAAAACTTGGA
CCGCGATTCTGCTGCCCCATGATGCACTTTTCCCGCCTTTAGCTGCACCA
GTAACCAATCAGAGACGCGTAATGCGATCATGTGATGAGGATTACGTAAC
ACGCGAAATGCATCTTGGGGCAGCAGAATTTAAACAATATGGCGGCGGGC
GACGGCGAAATGAAATGATTAGTCAATACAACCACTTGATACAACGCTGT
ATTTTGCGGCATAAATGCCGAGAGACGAACTTTTATTTTATCTCAAAATG
CGTTTTACACGTTTGTCTTTGACTAACCCGGTAGAAATCAAGCGGATCGT
CGTCTGGGCCTTCAATATCAAGGAAGTTTGTCAGATATCCTGGCGCGAGG
TTCTCAGCGTGAC

Coding sequence (CDS) from alignment at Sc0000010:4661266..4662078-

>transcript:BL84530_cuf0 ID=transcript:BL84530_cuf0|Name=transcript:BL84530_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=306bp|location=Sequence derived from alignment at Sc0000010:4661266..4662078- (Branchiostoma lanceolatum)
ATGTGTAACATTTCAGACAAAGAAAAAACTTGGACCGCGATTCTGCTGCC
CCATGATGCACTTTTCCCGCCTTTAGCTGCACCAGTAACCAATCAGAGAC
GCGTAATGCGATCATGTGATGAGGATTACGTAACACGCGAAATGCATCTT
GGGGCAGCAGAATTTAAACAATATGGCGGCGGGCGACGGCGAAATGAAAT
GATTAGTCAATACAACCACTTGATACAACGCTGTATTTTGCGGCATAAAT
GCCGAGAGACGAACTTTTATTTTATCTCAAAATGCGTTTTACACGTTTGT
CTTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL84530gene:BL84530Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL84530_cuf0-E1BL84530_cuf0-E1-1564476830-99440Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL84530_cuf0transcript:BL84530_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000010genomeSc0000010:4661266..4662078 -
Properties
Property NameValue
Transcript idBL84530_cuf0
Biotypeprotein_coding