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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL86392_cuf0 >transcript:BL86392_cuf0-protein ID=transcript:BL86392_cuf0-protein|Name=transcript:BL86392_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=421bp
MADSNIGYHEQEHTSEKPFMCGECGYRTGHRSHFSQHMRTHTGEKPYMCE
ECGYRAARKSTLSQHMRRHTGDKPYKCDQCDYSASIKSNLKRHVLKHTGE
KPYMCGECGYRAAQRSHLSEHMKSHTGEKPYMCGECGYRAAQRSHLSDHM
KSHTGEKPYMCGECGYRTAHKSHLSDHIKSHTGEKPFVCGECGYRSARKS
HLSQHMRTHTGEKPYKCGACEYRTAHRPALSQHMKTHTGEKPYKCDQCDY
SAAQKSSLDNHRVKHTGEKPYMCGECGYWTAKKYSLSVHMKSHRTARKSH
LSDHMKSHTGEKPFLCRECGYRTTKKSHLVRHTRTHTGESGFRTGQKSNL
SQHMRSHTGEKPYKCDPCGYSAAQKYSLDQHRVVKHTAEKPTCVGSVGTG
QLIAPYMQTSETLYWRETPHV Run BLAST on NCBI mRNA from alignment at Sc0000083:1204593..1207720+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL86392_cuf0 ID=transcript:BL86392_cuf0|Name=transcript:BL86392_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3128bp|location=Sequence derived from alignment at Sc0000083:1204593..1207720+ (Branchiostoma lanceolatum)
GTTTGTCGAAGTTAATTGGACGATCAATTGACCTGAATTGACAAGACCAA
GAGTTGTTACCTTAAGTGGGTAATCAGGCACAATTCTTGACCCCTGTTGA
CCCCTACTGACCTCCGAACGGGTCACGCAGAGCTTATCGGCGTCTCTTCC
AAGGAAAGAATTGTCACGATTTCCGCAGATTTGATCTACTTGCTCTATTT
TGGTGAGTACTAAAGACGGGGGAACTGTTAGGGAGAAAAAATTACTCTAT
GTCTAGCTTGTTTCCGTCCCATATAATGCTTATCTTCCTACCTCACAGTG
TACTGTGAATACGATGGTTTGCCACCACAGGGGGGAGGGGGGCGAAAGTT
TGACAAACCTTCACAGTATGATAGAAGAGTTGCAGTAAAACATGGCTGGG
ATGGCAGGTTTGGAGCGAGAAGGGGTGTAACTTCAGATTTTAAGAAACGC
CTCGTGATTATACCTGATGTTGCAGTTCGTTAAAGTTAAGTTATTATTAT
TATAAGAAAATTAAATATGGCCGCCATGTAGTGGGGGGGGGGCTTTCCGA
AAGAAGGTGACAGGGCTAGATTATGGGGGCCACGATCAATCCTTTTTTTT
TTTTTTTTTTTACTTCCCTTTGTGGCTGACAAGAACGACGTACAATTGTA
TACTGTTGATTGTGCTAGATACACAGTCACCTTGCCCTCTGTAGGCTAGA
CATGCAGTGCCTTCCATGTTTAAAAAAAAAAACGGGGTTACTGTACGCAA
TTTAACAAAGGTGTTTGAAACCTGTCAGTCATCGGGGATGGTGTGTGTGT
GTGTTTGACAAACCTCCACTCTGATTCTCTAATAGATGTTAAGTTGCAGT
AGGGCACTGTGACCGTTTTCACAAAATACTCAGATCACCTTCAAATTATG
CATGATGTACATGTTGCAGCTCATGAAACTAGAAGGTAAACTTTCTCAAT
ATCTGGTGGTTCAACCCAGTGGATGGACTGTACAAATATTTTGTTTATAC
TGACAGCTAGCAAGCACATCCTTATTCTATCATGTAACATTGATGTATTT
TTACAGTAACACATGTATTATAAGTCTCTCTTGGCTTGGCTTCGCTTACG
AATATTAAGTCTTATAGGTACAAGTTATAAGTAATTCCCTTAATACTGAT
TGAGACTAATTTGTCAAATGCTTTAATCTTTCAGCTAGGTGATCAAGGCT
ATGGCTGATTCCAACATTGGATACCATGAACAAGAACACACCAGTGAGAA
ACCCTTCATGTGTGGGGAGTGTGGGTACAGGACAGGTCATAGGTCTCACT
TTTCCCAACATATGAGAACTCATACTGGAGAGAAACCCTACATGTGTGAG
GAGTGTGGGTACAGGGCAGCTAGAAAGTCTACCTTATCCCAACACATGAG
AAGGCATACAGGAGACAAACCCTACAAGTGTGATCAGTGTGACTATTCTG
CCAGTATCAAATCTAACTTGAAACGGCATGTCCTAAAACACACAGGTGAA
AAACCCTACATGTGTGGGGAGTGTGGCTACAGGGCAGCTCAGAGGTCTCA
CTTATCCGAACATATGAAATCTCACACTGGTGAAAAACCCTACATGTGTG
GGGAGTGTGGGTACAGGGCAGCTCAGAGGTCTCACTTATCCGACCATATG
AAATCTCACACAGGAGAAAAACCCTACATGTGTGGGGAGTGTGGGTACAG
GACAGCACATAAGTCTCACTTATCTGACCACATAAAGTCTCACACAGGAG
AAAAACCTTTCGTGTGTGGGGAGTGTGGGTACAGATCCGCTAGGAAGTCT
CACTTATCCCAGCATATGAGAACTCATACAGGAGAGAAACCCTACAAGTG
CGGAGCGTGTGAGTACAGGACAGCTCATAGGCCCGCCTTATCCCAACACA
TGAAAACTCATACTGGAGAAAAACCCTACAAGTGTGACCAGTGTGACTAT
TCTGCTGCCCAGAAATCCAGCTTGGACAACCATCGAGTAAAACACACTGG
TGAGAAACCCTACATGTGTGGGGAGTGTGGGTACTGGACAGCAAAAAAGT
ATTCCTTGTCTGTCCATATGAAGTCTCACAGGACAGCTAGAAAGTCTCAC
TTATCCGACCATATGAAATCTCATACAGGAGAGAAACCCTTCTTGTGTCG
GGAGTGTGGGTACAGAACTACTAAGAAGTCTCACTTGGTCCGACACACTA
GAACACATACTGGTGAGAGTGGGTTCAGGACAGGCCAGAAGTCTAATTTA
TCCCAACACATGAGAAGTCATACTGGAGAGAAACCCTACAAGTGTGACCC
GTGTGGCTATTCTGCTGCACAGAAATACAGTTTGGACCAGCATCGAGTAG
TAAAACACACTGCTGAGAAACCTACATGTGTGGGGAGTGTGGGTACAGGA
CAGCTCATAGCTCCATATATGCAGACATCTGAGACCTTATATTGGCGAGA
AACTCCACATGTGTGACCTGTGTGACTGTTGTGAATCCCAGAAATCCGAT
CTGTTATCCAAAAAAGATGCTGGTTGAAAACTTAGCAAATGTTTATACAT
GCAGCCTAGAACTGTTAAACGGACCTGTATCTAAAACCATATACTGTTTC
GATGATTCCACAGATAACTTTCTACTGTATACAACTTCTGTATATATTTG
TATGCACGTATGTGTATTTCTGGCCCCTTCTTGGAATAAGAGGACGTTAC
AAGCATGTATCGCAAAGTGGATGGTCGAGATGTTAATTGATTTTCTTAAC
ATTTAAGATATTATATGAAAATCTAAAATTGAAGGGCATGTGTTTTACAC
TTAATGCGGCATTTGTCTCCCCCATTCCATTTGAAAGTATTGGAACTCAT
GTTCAAATTCATGTAATTTCCTATCAATGTATAACTTGTAGTTAATATAA
GTCTTGTGAAAACACTTCTCTGTACAACTTTCAGCTAAGGCACTTTTCAT
ACAGAAGCGCAGAATGCAGAATAGATGTGCATGTATGTAAGATAAGCTTC
TTATAACTTGTATCATCCCTAACATGGAAAAGGTAATTTGACGAAAATAC
GATGTATATGTTATGCTTTGTCAACGCTTTGATGTTATCTTTATATTTCA
TTAAAGTAGCTATTTCTACCAGTTTTCA Coding sequence (CDS) from alignment at Sc0000083:1204593..1207720+ >transcript:BL86392_cuf0 ID=transcript:BL86392_cuf0|Name=transcript:BL86392_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1266bp|location=Sequence derived from alignment at Sc0000083:1204593..1207720+ (Branchiostoma lanceolatum)
ATGGCTGATTCCAACATTGGATACCATGAACAAGAACACACCAGTGAGAA
ACCCTTCATGTGTGGGGAGTGTGGGTACAGGACAGGTCATAGGTCTCACT
TTTCCCAACATATGAGAACTCATACTGGAGAGAAACCCTACATGTGTGAG
GAGTGTGGGTACAGGGCAGCTAGAAAGTCTACCTTATCCCAACACATGAG
AAGGCATACAGGAGACAAACCCTACAAGTGTGATCAGTGTGACTATTCTG
CCAGTATCAAATCTAACTTGAAACGGCATGTCCTAAAACACACAGGTGAA
AAACCCTACATGTGTGGGGAGTGTGGCTACAGGGCAGCTCAGAGGTCTCA
CTTATCCGAACATATGAAATCTCACACTGGTGAAAAACCCTACATGTGTG
GGGAGTGTGGGTACAGGGCAGCTCAGAGGTCTCACTTATCCGACCATATG
AAATCTCACACAGGAGAAAAACCCTACATGTGTGGGGAGTGTGGGTACAG
GACAGCACATAAGTCTCACTTATCTGACCACATAAAGTCTCACACAGGAG
AAAAACCTTTCGTGTGTGGGGAGTGTGGGTACAGATCCGCTAGGAAGTCT
CACTTATCCCAGCATATGAGAACTCATACAGGAGAGAAACCCTACAAGTG
CGGAGCGTGTGAGTACAGGACAGCTCATAGGCCCGCCTTATCCCAACACA
TGAAAACTCATACTGGAGAAAAACCCTACAAGTGTGACCAGTGTGACTAT
TCTGCTGCCCAGAAATCCAGCTTGGACAACCATCGAGTAAAACACACTGG
TGAGAAACCCTACATGTGTGGGGAGTGTGGGTACTGGACAGCAAAAAAGT
ATTCCTTGTCTGTCCATATGAAGTCTCACAGGACAGCTAGAAAGTCTCAC
TTATCCGACCATATGAAATCTCATACAGGAGAGAAACCCTTCTTGTGTCG
GGAGTGTGGGTACAGAACTACTAAGAAGTCTCACTTGGTCCGACACACTA
GAACACATACTGGTGAGAGTGGGTTCAGGACAGGCCAGAAGTCTAATTTA
TCCCAACACATGAGAAGTCATACTGGAGAGAAACCCTACAAGTGTGACCC
GTGTGGCTATTCTGCTGCACAGAAATACAGTTTGGACCAGCATCGAGTAG
TAAAACACACTGCTGAGAAACCTACATGTGTGGGGAGTGTGGGTACAGGA
CAGCTCATAGCTCCATATATGCAGACATCTGAGACCTTATATTGGCGAGA
AACTCCACATGTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000083 | genome | Sc0000083:1204593..1207720 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL86392_cuf0 |
| Biotype | protein_coding |
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