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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL86571_cuf0 >transcript:BL86571_cuf0-protein ID=transcript:BL86571_cuf0-protein|Name=transcript:BL86571_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=442bp
METTADLTTAKENLGHGNNSPRTHKCSECHREFRQLSYLTIHMGTHTGER
PYRCEECSRQFSQLNHLKRHIKTHTGERPYRCEECNKAFSTMGEVKSHMV
THTGERPCKCEECGKWFSHQYLKKHMRTHTGEQPYQCEKCNQMFSALGPL
KLHMRTHTGEKPFKCEECSKPFSQLVHLQSHMRTHTGEKPYKCEECGKQF
SQMHSLKRHMRTHTGETPYRCEECGRQFNTRSNLKTHMRTHTGEKPYQCE
KCMKRFVHLDALKIHIRNHNGEKPYKCKECSRQFSQRSHWKTHMSTHSGV
KPYQCDICTKSFRQSSHLKVHLRTHTGERPYRCEECGKQFTTLDTLSIHA
RFHTGEKPYKCEECGKQLTTLSNLKIHMRTHTGEKPYMCENCGRHCITLS
SLKTHMRTHTGEKPYKCEECSKQFTTSSHLKSHMRIHKSECL Run BLAST on NCBI mRNA from alignment at Sc0000217:299045..304060+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL86571_cuf0 ID=transcript:BL86571_cuf0|Name=transcript:BL86571_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=5016bp|location=Sequence derived from alignment at Sc0000217:299045..304060+ (Branchiostoma lanceolatum)
TAACGATCCAGTCACCTTTGCTGATATTCACCAGGTAGAATGGTATTTCC
TTAAGTTATTTTTCGGGCCTCATTGACAAACACGAAGAATGATTGGACTA
TCTAAACTGCAATTCCATGAGAATACTGAACATGAGAATGCTTGAAGTTG
CCTACGTGTATCGCATGATTTCATAATGGAATTGCTACATATGGGGGTTT
CTAATGCCGTTGAATTGGAGGATCTAATGCTGTTGAACTTACCCTTATGA
AAGATATTCTATGCGACCCCGACGTTCAATTTTTAACTATTCATATCAAA
CCAATAGTGTACGTATATATTTTGGGCGTAATCTGTTGTCTAATTACGTT
GTCTGATCTTTTCCTTAGTAAATCAAACCCTCCTCATTATTCTTTGACAT
GTTGCGCGATTGTCTAAGAGGTCGTGCCTTACTGGCCACAGGAAACGGAT
AAATCTAATTAGGTTCATTATTGGCCGGCATGCCACGTGTATGTATGAGA
TGTGAGCCCTGATTGGTCACAGTAACTAGACACCTGGTCCCATTATACCA
TTGCAGTGTATCTGCGCCAATCTAAAGCTGTAAGTGGACACGGCCGGATA
CAGACAACCTCTTCTGTTTCAAAGAAAGCGGATTTACCTCCTCTGGTCCG
TCGTCACCACTGCTGATTCTAAGAGGTAAAGTATGATTTTCTAGGCCTTG
ATTGCCCACATCAAATAGACAAATGGCTTTTAATTCGATAACCACTCTGA
TTTCAAATGTACGAAAATGGTATATTCTGTTTACAAATATTGAATTAAGA
GCGAGGGAAGAGAGTTCGTAAGATCTTAGTAACGAGTTCTTGCTGAGGTC
AGCATTGCTAAGTTCAGCGATTAAACGTTATTGTTGAAACAAATAATTCA
CAGCTTCGTAATGTTGTCAAAAATTAGCTTCTTGTACTGTTGAACCCTGA
AAAAATGCAGAGACACCAGGTTAATGTTAAAACCTAAGGGAATGCAGAAT
CTGTCGGTTTCGTTGGGGGTATAAAAACAAACTAGACGGAAATGAATTAT
GGTGGACATTGTGATGTAAAAGATGCGTTGCGGCTTTATTATGCGAATCT
TACATAGATATGTACTGTATTTACCGATATCTGAATATCCCATAGGCTGT
TGGTAAGACTCACATTATTGTAGTGGTTTATATTATCTGTCTTGTTTGCA
CATTTTCACAACTGTTAATTGTGTCACCTCGTTGATATTTTTACCTAATT
TCTGCGTAATCATTTCGGCTGTTAACCAAATTCTGGCTTGTATTAGAATG
TAAAAAATTGTCTGCTACCTAAAAGTCAGACAACTACCAAAGCCATGAAC
TGATTCTAGTCATCAGCGCAAAATAACAATGCAGGTGATATTGAGCAGGC
AGCTTTAAATCGTCGCACGGTGTGCAGACAACAGGGCGGGGGCAATTTTA
CATATTAAGCACACGGACTTCGGATAGAATAAATATTATTTCCTTGAATT
TTTAATCCTGACCAGTAAGAGGGCAGATGAGACGCACACGCACCATAGGG
CAAACGACAACAGTATTTAGTATCGGTAAAAAGTTGTAAACACTGTAAAT
TGGAGAATTAACAAGTTTTACGCCGGTCAGTGTGTTTACACATATCGTTA
TTAAGTCTTGAGAAGTTATAAATTCTTGATCAGTTTGGTCACTTTGTGAT
TTTATTTAGAAACCGCTTGTACGTTTTTCTAAGGAAGTTGGACGTTTGTC
CAACTGAAATTGTCTCGTGATTATGTTGATGAAGTGTTGCACACTTATTT
TGTTTAATCTATTTGAGTATTATGTAGACAGGAGGGAGGGAGAATAAGAT
AGATCTAGAGAACTTTGGATGTAAGAGGCCATAACAGTCAGCAAAGCTAC
GCCTGCCATGCTATATAACAAATGGTGTTTGCCACGTCAGGTTTCCATGG
CAAACTTGTTTTACAATGCAAGGAATCCTTACCGACCTCAAGGAGGCACA
AGGATAAACGTGGGCAGACACAAAATCGAGTTTGGCGGGAACCCAACCAT
TTATTCCTTAAACGGAATCGTAAACAAATATATAAACAGATGAGTATGAA
GGAAATGATATAAAACAAGGTACAGGATGTATACAATAATATCGTCTATA
TAAACTTCGAAGCAAAAGATTGGTGTGCTTTAGCTAAAAACTTCGGAGCA
AAGATTGGTGGCAAAAGATCGGAGCAAAGGATTGGTGTGCTTCCGCCGCG
AGTTGTGCGCTAATAATGATTTGGATATAGGTCTGGGGGTTGTGGCGATC
TTGAGACCACCCAGGGGTGTTACCCATTCATCGCTACGAGATATGATCCT
GACACCCCCGTTTTACAACATGTTTGTCGGCAACTTGACACAAAGAGATT
TCGGGTTTTCACATGGGAACGGCCTGACCACCTTGTTAGCTAGTACGTCG
GTCGGAGTTCCTTTCCTTTCAAAACACGTTTTTATGTTGATTTTTTGTAA
TATTACTTATTGTTATAGTGGTTGCATTTGATACAATATAAAGGTCGCCG
AGCATTTTGACTATAAAGGGTGTCTTATCTTATGCTTATAGTGTAGGTTG
ATAAACGTTTTATAATTAGCCAGATGCGCGGATGTAATAGTTAAGAAACA
CGTACATTCTTCCCTTTTTAAAAAATAATTACTTGCATGATTTCTGCAGA
ATCGAAGGGTTGGTGAACATGGAAACCACAGCTGACCTGACAACGGCCAA
GGAAAATCTTGGACATGGAAACAATTCACCGCGAACCCACAAGTGCAGCG
AGTGCCACAGGGAGTTTCGTCAGCTGAGTTATCTGACGATACACATGGGG
ACTCACACTGGTGAGAGACCTTACAGGTGTGAGGAGTGCAGCAGGCAGTT
CAGTCAACTGAATCATCTGAAGAGGCACATCAAAACTCACACTGGCGAAA
GACCGTACAGATGTGAGGAGTGTAACAAAGCGTTTAGTACAATGGGTGAG
GTAAAATCACACATGGTGACTCACACTGGCGAGAGGCCGTGTAAATGTGA
GGAGTGCGGCAAGTGGTTTAGTCACCAATATCTGAAAAAGCACATGCGCA
CTCACACTGGTGAACAACCATACCAATGTGAGAAGTGCAACCAAATGTTC
AGTGCACTGGGTCCCCTAAAGCTGCACATGAGAACTCACACTGGTGAGAA
ACCATTCAAGTGTGAGGAGTGCAGCAAACCTTTTAGTCAGCTGGTTCATC
TGCAGTCGCACATGAGAACTCACACTGGTGAGAAACCGTACAAGTGTGAG
GAGTGCGGTAAGCAGTTCAGCCAGATGCATAGTCTAAAAAGACACATGCG
CACTCACACGGGCGAGACGCCGTACAGATGTGAGGAATGTGGCAGACAAT
TCAACACGCGATCCAATCTGAAGACACATATGAGGACTCACACTGGTGAA
AAACCGTACCAGTGTGAGAAATGCATGAAACGCTTTGTTCACCTCGATGC
CCTAAAGATACACATCAGGAATCACAATGGTGAGAAGCCATACAAATGTA
AGGAGTGTAGTAGGCAGTTCAGTCAGCGAAGCCACTGGAAGACGCATATG
TCGACTCATTCAGGCGTGAAACCGTACCAGTGTGACATATGCACAAAGAG
TTTCCGTCAATCCAGTCACCTGAAGGTTCACTTGCGGACTCACACCGGTG
AGAGACCCTACAGATGTGAGGAGTGCGGAAAGCAGTTCACAACCCTGGAT
ACTCTAAGTATACACGCAAGGTTTCACACCGGTGAGAAACCGTACAAGTG
TGAGGAGTGTGGCAAGCAGCTCACTACGTTGTCTAATCTAAAGATACACA
TGCGCACTCACACGGGCGAGAAACCTTACATGTGTGAGAATTGTGGCCGA
CATTGCATTACGCTGTCAAGCCTTAAGACGCATATGCGCACTCACACGGG
CGAGAAACCGTACAAGTGTGAGGAATGTAGCAAACAGTTCACTACGTCGT
CACATCTTAAGTCACATATGCGCATTCACAAAAGTGAATGTCTGTGAATA
CTGACATGGGGATTATATTCCGGTCATTTGAAGAGAACTACACGACAAAC
GGAAAGCTTAGACCCAAAATCTGAAAATATTGGACTTTTGGTATAAAACC
CGGTTTCCCAGTCCTATCGTTAGTCACTCACGAAAGACAACGGTGGCTGT
CGAAAACGTCTGACTGTTTCAAAATTTTATCCAGTTGCTTGTCAGTAACT
ATTTTTGGTGCTGGACTTTGAATTGACTTTGCTTGGATCCACAATTTGCT
GTTTTTGCAACGACTATCATTCCTGTTCTTACTGCGATAGGATGACGGCA
CAACATTCACATATGCTATGAATTACTTCTACATGTATATGAAAATTCTG
ACTTGATACAGGAATGAACGACTTGAAAGGGTTGATTTTTCTTGTATTGT
ATATCAAGATGGTTTCATTTTACAAATGCAGACTCAGACAAGGACTGATG
TGTCTTTTTGTTAAAAGTTCCGGAATATTTTTATGTGTTTTTGCCATGTT
TTTTTCGCAAATTGCATCTTTATCTAATCTATTCGTCTGAAGGTGACAAA
CATTATGTAACAGTAATTTCTACATACAAGGAGGATATACATACAGGGCA
GAGATCCTTGCAGTATACAGCTAGAGATCCTGACAGTGACTTTTATGGTG
ATTCTGTCAGATCTTTATCTTCACAATCATACATATATCAAACACTCATA
TTCAGATGTCTTGCGTCTTTAATCGAATAACCTTTGTAAATATACGGAGT
CACAAACGGTATGTTACCTTTGCAATAGTGTTAGTATAGTTTTCCATACC
TGCCAACCCACTAGATAGGACCCACCCGGCCTTAGAAAGTTGGCGCTTGT
GGTACAACTAATCGAAGTATGACAATATGAATATTTATCTGTGCAATAGT
TCTTCTATGATTGTTCATGTGCTGTTATATACCTTGTTTCGAGGAAATGT
AGTATTGACAGTTAAT Coding sequence (CDS) from alignment at Sc0000217:299045..304060+ >transcript:BL86571_cuf0 ID=transcript:BL86571_cuf0|Name=transcript:BL86571_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1329bp|location=Sequence derived from alignment at Sc0000217:299045..304060+ (Branchiostoma lanceolatum)
ATGGAAACCACAGCTGACCTGACAACGGCCAAGGAAAATCTTGGACATGG
AAACAATTCACCGCGAACCCACAAGTGCAGCGAGTGCCACAGGGAGTTTC
GTCAGCTGAGTTATCTGACGATACACATGGGGACTCACACTGGTGAGAGA
CCTTACAGGTGTGAGGAGTGCAGCAGGCAGTTCAGTCAACTGAATCATCT
GAAGAGGCACATCAAAACTCACACTGGCGAAAGACCGTACAGATGTGAGG
AGTGTAACAAAGCGTTTAGTACAATGGGTGAGGTAAAATCACACATGGTG
ACTCACACTGGCGAGAGGCCGTGTAAATGTGAGGAGTGCGGCAAGTGGTT
TAGTCACCAATATCTGAAAAAGCACATGCGCACTCACACTGGTGAACAAC
CATACCAATGTGAGAAGTGCAACCAAATGTTCAGTGCACTGGGTCCCCTA
AAGCTGCACATGAGAACTCACACTGGTGAGAAACCATTCAAGTGTGAGGA
GTGCAGCAAACCTTTTAGTCAGCTGGTTCATCTGCAGTCGCACATGAGAA
CTCACACTGGTGAGAAACCGTACAAGTGTGAGGAGTGCGGTAAGCAGTTC
AGCCAGATGCATAGTCTAAAAAGACACATGCGCACTCACACGGGCGAGAC
GCCGTACAGATGTGAGGAATGTGGCAGACAATTCAACACGCGATCCAATC
TGAAGACACATATGAGGACTCACACTGGTGAAAAACCGTACCAGTGTGAG
AAATGCATGAAACGCTTTGTTCACCTCGATGCCCTAAAGATACACATCAG
GAATCACAATGGTGAGAAGCCATACAAATGTAAGGAGTGTAGTAGGCAGT
TCAGTCAGCGAAGCCACTGGAAGACGCATATGTCGACTCATTCAGGCGTG
AAACCGTACCAGTGTGACATATGCACAAAGAGTTTCCGTCAATCCAGTCA
CCTGAAGGTTCACTTGCGGACTCACACCGGTGAGAGACCCTACAGATGTG
AGGAGTGCGGAAAGCAGTTCACAACCCTGGATACTCTAAGTATACACGCA
AGGTTTCACACCGGTGAGAAACCGTACAAGTGTGAGGAGTGTGGCAAGCA
GCTCACTACGTTGTCTAATCTAAAGATACACATGCGCACTCACACGGGCG
AGAAACCTTACATGTGTGAGAATTGTGGCCGACATTGCATTACGCTGTCA
AGCCTTAAGACGCATATGCGCACTCACACGGGCGAGAAACCGTACAAGTG
TGAGGAATGTAGCAAACAGTTCACTACGTCGTCACATCTTAAGTCACATA
TGCGCATTCACAAAAGTGAATGTCTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000217 | genome | Sc0000217:299045..304060 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL86571_cuf0 |
| Biotype | protein_coding |
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