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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL87274_cuf1 >transcript:BL87274_cuf1-protein ID=transcript:BL87274_cuf1-protein|Name=transcript:BL87274_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=592bp
MAESGLSPLTRLYVKISNSLSEEDVRNLRVILARESLGQAKVEQATALEM
FNMLETDNKIGNGNLKFLVEVLRGLGKGRLAEEAEKLEQEHRREGTESNG
PGKVGKSAVKQKVPVEAAVPKITQGMENLDKKLTATGGEQGGQVKKKIAE
CSLKPQGGEQKMISGAQRVQTDRRGELPCQQREQLLEKGLQQLPSKNAGN
RTLAGHESFQPSSQSQVLSASVLESAGMTISVEGPAVESLPCSVTVTDTA
DRNVAPQIEVTSPQGKTTLILTTAHTSPPLAAGKGQTSRVRRVWGGEWRP
QESGKHTLGVCMGGKKDLGSLTIDVGSNNPVLRFGQRGSQQGQFNWPRDV
AVRGDRLYVADTLNSRVQVFDLSGKFSFLFSTTANPVSLAVQTDGTIMVK
SGKEVKKFSPSGELLHKFPLGEYCTTPYGLAVQRGGRVVVADIGKHSIFL
FEADGTLVKQVGGEGQGEGQFYQPWFVCVDKEDNIIVADTENHRVQVFDK
NLNFKHKFGQFGRQPQDMLGPTGVSADSRGNIVLANTGGKKLQVFRPDGT
WVATISSDRDKLNLPWGVAVTEDGHVFVADSRYHCIRKYRYM Run BLAST on NCBI mRNA from alignment at Sc0000001:207543..210323+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL87274_cuf1 ID=transcript:BL87274_cuf1|Name=transcript:BL87274_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2781bp|location=Sequence derived from alignment at Sc0000001:207543..210323+ (Branchiostoma lanceolatum)
TAGGGCTATCTTAAACTCAAACCCTCGCATTGCTTTTATTTCTGTATCTC
CAGAAACCCATAACACCTTGAAGGAGACACTGTAAGTTACAAACTGATAA
TGGCTGAATCTGGACTCTCCCCCCTTACTCGGCTGTACGTCAAGATTTCT
AACAGCTTGTCAGAAGAAGATGTCAGAAATCTACGCGTCATTCTTGCTCG
TGAAAGTCTTGGACAGGCAAAAGTTGAACAAGCGACAGCTCTGGAAATGT
TCAACATGTTGGAGACTGACAATAAGATTGGCAATGGCAACCTAAAGTTC
CTTGTGGAGGTCTTGAGAGGTCTGGGGAAAGGAAGATTGGCCGAAGAAGC
TGAAAAACTTGAACAAGAGCATAGGAGGGAAGGTATGTCAGATTTGTAAG
ATTGGTGCAAGCGAAATAAACTGTATTATAGCAACCACAAATCTATTAAA
TGCTCTTCGAAAACCATAAAATAAACACTGTCAGTCATTTAAAAGTATTC
TAAAATTTGTAAGACCCCCAAAAATACTGACGCAGAGACAAATTTTGAAT
TATGATTTTCTTCCTGGCAGGGACAGAAAGTAACGGCCCTGGAAAAGTGG
GTAAATCTGCAGTAAAGCAGAAAGTTCCAGTGGAAGCAGCTGTCCCTAAG
ATAACCCAGGGAATGGAGAACTTGGACAAGAAACTCACAGCAACAGGAGG
GGAACAAGGTGGACAGGTGAAAAAAAAGATCGCAGAGTGCAGCCTGAAAC
CTCAGGGGGGAGAGCAGAAAATGATCTCAGGGGCACAGAGGGTTCAGACG
GACAGGAGAGGTGAACTTCCTTGTCAACAGAGAGAACAGTTACTGGAGAA
AGGACTGCAGCAGCTCCCCTCAAAGAATGCAGGAAACAGAACATTAGCTG
GTCATGAGTCTTTCCAACCCTCCAGTCAGTCCCAGGTTTTATCAGCTTCC
GTACTGGAGTCAGCTGGGATGACCATTAGTGTAGAGGGGCCAGCAGTGGA
AAGTCTGCCCTGCTCTGTCACAGTCACAGATACAGCAGATAGAAATGTTG
CACCACAGATAGAGGTGACCTCCCCCCAGGGCAAAACCACCCTGATACTG
ACTACAGCACACACTAGTCCCCCACTAGCTGCAGGGAAGGGACAAACCAG
CAGAGTTAGGAGGGTCTGGGGTGGAGAATGGAGACCTCAGGAGTCAGGAA
AACACACACTAGGGGTCTGTATGGGGGGTAAGAAGGACTTGGGTTCTCTT
ACTATAGATGTGGGCAGTAACAACCCTGTACTGAGGTTTGGGCAGAGGGG
CAGCCAGCAGGGGCAGTTTAACTGGCCTAGGGATGTAGCAGTCAGGGGGG
ACAGGCTGTATGTGGCTGATACTTTAAACAGTCGTGTTCAGGTGTTCGAT
CTGAGTGGGAAGTTTTCTTTTTTATTTTCAACAACTGCAAACCCTGTATC
ACTTGCAGTTCAGACAGATGGCACCATAATGGTGAAATCTGGGAAGGAAG
TGAAGAAATTTTCCCCATCAGGAGAATTGCTGCACAAATTTCCTCTGGGT
GAATATTGCACAACCCCCTATGGCCTGGCAGTACAGAGGGGTGGGAGGGT
TGTTGTAGCTGATATTGGCAAACACAGCATCTTCCTGTTTGAGGCAGATG
GGACACTGGTGAAACAGGTGGGAGGGGAGGGCCAGGGGGAGGGGCAGTTT
TACCAGCCATGGTTTGTCTGTGTGGATAAAGAAGACAACATCATTGTGGC
AGATACAGAAAACCACCGTGTTCAGGTGTTTGACAAGAATCTGAACTTCA
AACACAAGTTTGGTCAGTTTGGCAGACAGCCACAGGACATGCTGGGCCCT
ACAGGGGTGTCAGCTGACAGCAGGGGGAACATAGTTCTGGCAAACACTGG
GGGTAAGAAGCTGCAGGTGTTCCGTCCAGACGGCACCTGGGTTGCGACCA
TCAGCAGTGATAGGGACAAACTGAACCTGCCCTGGGGAGTGGCTGTGACA
GAGGACGGACATGTGTTTGTAGCTGATAGTAGGTACCACTGTATCAGGAA
GTACAGATACATGTAACAGATTAAAATGTCTAGTAAATACAGTAACATGG
CCAGTGAGGAGGATGTTGGGACATGGCTGGTCTCAGTAGATTTCATTTGC
CTGTAACTGTAAGTGCTACAGGTAATGATTGGTTTATTATTATTACATTC
ACAGTCAACAAACAACAGCATAGCAGGTAACCGAAGTTACTTGAATTGCG
CTGGAGTTACAGTGTTTAAAATCGCAATTATTGTCTACAAAGTCATACTC
TTTAAAAATAAATCACGTATAAAATACAACAGCAGTAAAATATTGATGTA
CGAATCAAGTCAAGATTCAACCATAAATGTTTGCTAAATTACAATATACA
CAAAAAGTGACAGGCGAAGTCAACAGAAACTTCGGAATGTGACTAAACTC
GCATTTGTACTGTTTGTTCTTTATCTATGTAAAATGAGATAGAATCAATA
AGTTTAAAGCTAGTTTAAGTTTTAATACATTTCTTTCATTTTCTTCTCTA
TGATAAGATTTATTAGAGGTCCAGACAGAACCTTCACTATATCATTCAAT
GTGAACTTTTCGTAAATGTTAAGATGGCCTACCATTTCTTTGTGCATTGT
ATAAAATGGTGGGATCAGTTCATCTAACGTTGCATGGCTTTTTTTGTCAT
TTTGGACATTACTTGAATGAATAGAAAGTGAGCACCAAATTTTGTCAAAA
GAAACAGAATTGTAACTAACATTAGTTGGTG Coding sequence (CDS) from alignment at Sc0000001:207543..210323+ >transcript:BL87274_cuf1 ID=transcript:BL87274_cuf1|Name=transcript:BL87274_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3558bp|location=Sequence derived from alignment at Sc0000001:207543..210323+ (Branchiostoma lanceolatum)
ATGGCTGAATCTGGACTCTCCCCCCTTACTCGGCTGTACGTCAAGATTTC
TAACAGCTTGTCAGAAGAAGATGTCAGAAATCTACGCGTCATTCTTGCTC
GTGAAAGTCTTGGACAGGCAAAAGTTGAACAAGCGACAGCTCTGGAAATG
TTCAACATGTTGGAGACTGACAATAAGATTGGCAATGGCAACCTAAAGTT
CCTTGTGGAGGTCTTGAGAGGTCTGGGGAAAGGAAGATTGGCCGAAGAAG
CTGAAAAACTTGAACAAGAGCATAGGAGGGAAGGGACAGAAAGTAACGGC
CCTGGAAAAGTGGGTAAATCTGCAGTAAAGCAGAAAGTTCCAGTGGAAGC
AGCTGTCCCTAAGATAACCCAGGGAATGGAGAACTTGGACAAGAAACTCA
CAGCAACAGGAGGGGAACAAGGTGGACAGGTGAAAAAAAAGATCGCAGAG
TGCAGCCTGAAACCTCAGGGGGGAGAGCAGAAAATGATCTCAGGGGCACA
GAGGGTTCAGACGGACAGGAGAGGTGAACTTCCTTGTCAACAGAGAGAAC
AGTTACTGGAGAAAGGACTGCAGCAGCTCCCCTCAAAGAATGCAGGAAAC
AGAACATTAGCTGGTCATGAGTCTTTCCAACCCTCCAGTCAGTCCCAGGT
TTTATCAGCTTCCGTACTGGAGTCAGCTGGGATGACCATTAGTGTAGAGG
GGCCAGCAGTGGAAAGTCTGCCCTGCTCTGTCACAGTCACAGATACAGCA
GATAGAAATGTTGCACCACAGATAGAGGTGACCTCCCCCCAGGGCAAAAC
CACCCTGATACTGACTACAGCACACACTAGTCCCCCACTAGCTGCAGGGA
AGGGACAAACCAGCAGAGTTAGGAGGGTCTGGGGTGGAGAATGGAGACCT
CAGGAGTCAGGAAAACACACACTAGGGGTCTGTATGGGGGGTAAGAAGGA
CTTGGGTTCTCTTACTATAGATGTGGGCAGTAACAACCCTGTACTGAGGT
TTGGGCAGAGGGGCAGCCAGCAGGGGCAGTTTAACTGGCCTAGGGATGTA
GCAGTCAGGGGGGACAGGCTGTATGTGGCTGATACTTTAAACAGTCGTGT
TCAGGTGTTCGATCTGAGTGGGAAGTTTTCTTTTTTATTTTCAACAACTG
CAAACCCTGTATCACTTGCAGTTCAGACAGATGGCACCATAATGGTGAAA
TCTGGGAAGGAAGTGAAGAAATTTTCCCCATCAGGAGAATTGCTGCACAA
ATTTCCTCTGGGTGAATATTGCACAACCCCCTATGGCCTGGCAGTACAGA
GGGGTGGGAGGGTTGTTGTAGCTGATATTGGCAAACACAGCATCTTCCTG
TTTGAGGCAGATGGGACACTGGTGAAACAGGTGGGAGGGGAGGGCCAGGG
GGAGGGGCAGTTTTACCAGCCATGGTTTGTCTGTGTGGATAAAGAAGACA
ACATCATTGTGGCAGATACAGAAAACCACCGTGTTCAGGTGTTTGACAAG
AATCTGAACTTCAAACACAAGTTTGGTCAGTTTGGCAGACAGCCACAGGA
CATGCTGGGCCCTACAGGGGTGTCAGCTGACAGCAGGGGGAACATAGTTC
TGGCAAACACTGGGGGTAAGAAGCTGCAGGTGTTCCGTCCAGACGGCACC
TGGGTTGCGACCATCAGCAGTGATAGGGACAAACTGAACCTGCCCTGGGG
AGTGGCTGTGACAGAGGACGGACATGTGTTTGTAGCTGATAGTAGGTACC
ACTGTATCAGGAAGTACAGATACATGTAAATGGCTGAATCTGGACTCTCC
CCCCTTACTCGGCTGTACGTCAAGATTTCTAACAGCTTGTCAGAAGAAGA
TGTCAGAAATCTACGCGTCATTCTTGCTCGTGAAAGTCTTGGACAGGCAA
AAGTTGAACAAGCGACAGCTCTGGAAATGTTCAACATGTTGGAGACTGAC
AATAAGATTGGCAATGGCAACCTAAAGTTCCTTGTGGAGGTCTTGAGAGG
TCTGGGGAAAGGAAGATTGGCCGAAGAAGCTGAAAAACTTGAACAAGAGC
ATAGGAGGGAAGGGACAGAAAGTAACGGCCCTGGAAAAGTGGGTAAATCT
GCAGTAAAGCAGAAAGTTCCAGTGGAAGCAGCTGTCCCTAAGATAACCCA
GGGAATGGAGAACTTGGACAAGAAACTCACAGCAACAGGAGGGGAACAAG
GTGGACAGGTGAAAAAAAAGATCGCAGAGTGCAGCCTGAAACCTCAGGGG
GGAGAGCAGAAAATGATCTCAGGGGCACAGAGGGTTCAGACGGACAGGAG
AGGTGAACTTCCTTGTCAACAGAGAGAACAGTTACTGGAGAAAGGACTGC
AGCAGCTCCCCTCAAAGAATGCAGGAAACAGAACATTAGCTGGTCATGAG
TCTTTCCAACCCTCCAGTCAGTCCCAGGTTTTATCAGCTTCCGTACTGGA
GTCAGCTGGGATGACCATTAGTGTAGAGGGGCCAGCAGTGGAAAGTCTGC
CCTGCTCTGTCACAGTCACAGATACAGCAGATAGAAATGTTGCACCACAG
ATAGAGGTGACCTCCCCCCAGGGCAAAACCACCCTGATACTGACTACAGC
ACACACTAGTCCCCCACTAGCTGCAGGGAAGGGACAAACCAGCAGAGTTA
GGAGGGTCTGGGGTGGAGAATGGAGACCTCAGGAGTCAGGAAAACACACA
CTAGGGGTCTGTATGGGGGGTAAGAAGGACTTGGGTTCTCTTACTATAGA
TGTGGGCAGTAACAACCCTGTACTGAGGTTTGGGCAGAGGGGCAGCCAGC
AGGGGCAGTTTAACTGGCCTAGGGATGTAGCAGTCAGGGGGGACAGGCTG
TATGTGGCTGATACTTTAAACAGTCGTGTTCAGGTGTTCGATCTGAGTGG
GAAGTTTTCTTTTTTATTTTCAACAACTGCAAACCCTGTATCACTTGCAG
TTCAGACAGATGGCACCATAATGGTGAAATCTGGGAAGGAAGTGAAGAAA
TTTTCCCCATCAGGAGAATTGCTGCACAAATTTCCTCTGGGTGAATATTG
CACAACCCCCTATGGCCTGGCAGTACAGAGGGGTGGGAGGGTTGTTGTAG
CTGATATTGGCAAACACAGCATCTTCCTGTTTGAGGCAGATGGGACACTG
GTGAAACAGGTGGGAGGGGAGGGCCAGGGGGAGGGGCAGTTTTACCAGCC
ATGGTTTGTCTGTGTGGATAAAGAAGACAACATCATTGTGGCAGATACAG
AAAACCACCGTGTTCAGGTGTTTGACAAGAATCTGAACTTCAAACACAAG
TTTGGTCAGTTTGGCAGACAGCCACAGGACATGCTGGGCCCTACAGGGGT
GTCAGCTGACAGCAGGGGGAACATAGTTCTGGCAAACACTGGGGGTAAGA
AGCTGCAGGTGTTCCGTCCAGACGGCACCTGGGTTGCGACCATCAGCAGT
GATAGGGACAAACTGAACCTGCCCTGGGGAGTGGCTGTGACAGAGGACGG
ACATGTGTTTGTAGCTGATAGTAGGTACCACTGTATCAGGAAGTACAGAT
ACATGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000001 | genome | Sc0000001:207543..210323 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL87274_cuf1 |
| Biotype | protein_coding |
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