transcript:BL87275_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL87275_cuf0
Unique Nametranscript:BL87275_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL87275_cuf0

>transcript:BL87275_cuf0-protein ID=transcript:BL87275_cuf0-protein|Name=transcript:BL87275_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=200bp
GEVGKSAVKKKVPVEAAVPEITQGMENLGRNLTAAGGKQGEQPKKEIKES
SLFIINVEGSAVESLPCSVTVTADTAGGTVIPQIEVTSPQGKTTMLVIHT
TAHTIHADSAGLPPRPHTSPPLAAGKGQTSRVRRVWGGVWRPQESGKHTL
GVCMGGKKDLGSLTVDVGSNNPVLRFGQKGSQQGQFDKPLGVAVRGDRLY
Run BLAST on NCBI

mRNA from alignment at Sc0000001:202277..202878+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL87275_cuf0 ID=transcript:BL87275_cuf0|Name=transcript:BL87275_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=602bp|location=Sequence derived from alignment at Sc0000001:202277..202878+ (Branchiostoma lanceolatum)
TGGAGAAGTGGGTAAATCTGCAGTAAAGAAGAAAGTTCCAGTTGAAGCAG CTGTCCCTGAGATTACCCAGGGAATGGAAAACCTTGGCAGGAATCTCACA GCCGCAGGAGGGAAACAAGGTGAACAGCCGAAAAAAGAGATCAAAGAGAG TAGCCTGTTCATTATCAATGTAGAGGGGTCGGCAGTGGAGAGTCTGCCCT GCTCTGTCACAGTCACAGCTGACACTGCAGGTGGGACTGTTATACCACAG ATAGAGGTGACCTCCCCCCAGGGCAAAACCACCATGTTAGTGATACACAC AACAGCACACACAATACATGCAGATAGTGCTGGTCTCCCACCAAGACCCC ACACTAGTCCCCCACTAGCTGCAGGGAAGGGACAAACCAGCAGAGTTAGG AGGGTCTGGGGTGGAGTATGGAGACCTCAGGAGTCAGGAAAACACACACT GGGGGTCTGTATGGGGGGTAAGAAGGATCTGGGTTCTCTCACTGTAGATG TGGGCAGTAACAACCCTGTACTGAGGTTTGGGCAGAAGGGCAGCCAGCAG GGGCAGTTTGACAAGCCTTTAGGTGTAGCAGTCAGGGGGGACAGGCTGTA TG

Coding sequence (CDS) from alignment at Sc0000001:202277..202878+

>transcript:BL87275_cuf0 ID=transcript:BL87275_cuf0|Name=transcript:BL87275_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=600bp|location=Sequence derived from alignment at Sc0000001:202277..202878+ (Branchiostoma lanceolatum)
GGAGAAGTGGGTAAATCTGCAGTAAAGAAGAAAGTTCCAGTTGAAGCAGC
TGTCCCTGAGATTACCCAGGGAATGGAAAACCTTGGCAGGAATCTCACAG
CCGCAGGAGGGAAACAAGGTGAACAGCCGAAAAAAGAGATCAAAGAGAGT
AGCCTGTTCATTATCAATGTAGAGGGGTCGGCAGTGGAGAGTCTGCCCTG
CTCTGTCACAGTCACAGCTGACACTGCAGGTGGGACTGTTATACCACAGA
TAGAGGTGACCTCCCCCCAGGGCAAAACCACCATGTTAGTGATACACACA
ACAGCACACACAATACATGCAGATAGTGCTGGTCTCCCACCAAGACCCCA
CACTAGTCCCCCACTAGCTGCAGGGAAGGGACAAACCAGCAGAGTTAGGA
GGGTCTGGGGTGGAGTATGGAGACCTCAGGAGTCAGGAAAACACACACTG
GGGGTCTGTATGGGGGGTAAGAAGGATCTGGGTTCTCTCACTGTAGATGT
GGGCAGTAACAACCCTGTACTGAGGTTTGGGCAGAAGGGCAGCCAGCAGG
GGCAGTTTGACAAGCCTTTAGGTGTAGCAGTCAGGGGGGACAGGCTGTAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL87275gene:BL87275Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL87275_cuf0-E1BL87275_cuf0-E1-1564476830-20170Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL87275_cuf0transcript:BL87275_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000001genomeSc0000001:202277..202878 +
Properties
Property NameValue
Transcript idBL87275_cuf0
Biotypeprotein_coding