transcript:BL87297_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL87297_cuf0
Unique Nametranscript:BL87297_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL87297_cuf0

>transcript:BL87297_cuf0-protein ID=transcript:BL87297_cuf0-protein|Name=transcript:BL87297_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=164bp
MVKPLEGALYAAVGGISSAVLAAQVIYPHIWRDLKLIRRLRGPISRTRQY
LSAEPPITIVDRFLHQVQLQPDKPFLLFEDEVYTYKDMDVMSNKVANFFR
GEGYRCGDTVAMLIYNEPAFIWTFLGLAKLGVKMAFLNTNLRTKSLLHCF
NVSEAKALIVGQDE
Run BLAST on NCBI

mRNA from alignment at Sc0000048:68320..68911+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL87297_cuf0 ID=transcript:BL87297_cuf0|Name=transcript:BL87297_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=592bp|location=Sequence derived from alignment at Sc0000048:68320..68911+ (Branchiostoma lanceolatum)
GTGCAAAGTCATGAGAAGACCTTTAGACTCACATACTCTCTTAGAGTCTC
GTCACCAGCTTCAGAAAGGATTATAAACATATCTCTAGACCATTTCAACA
ATGGTAAAGCCACTAGAAGGAGCATTGTATGCTGCTGTTGGCGGCATATC
TTCAGCCGTTCTAGCCGCCCAAGTCATTTATCCTCACATTTGGCGAGATT
TAAAGTTAATTCGGAGACTCAGGGGACCGATCAGCCGAACACGTCAGTAC
CTATCGGCAGAGCCGCCGATCACCATAGTGGACCGCTTCCTGCACCAGGT
TCAGCTCCAGCCCGACAAGCCCTTCCTCCTGTTCGAGGATGAAGTCTACA
CCTACAAGGACATGGACGTCATGTCCAACAAGGTGGCCAACTTCTTCCGG
GGGGAGGGCTACAGGTGCGGGGACACCGTCGCCATGTTGATCTACAACGA
GCCGGCCTTCATCTGGACCTTCCTGGGACTGGCCAAGTTGGGGGTGAAGA
TGGCGTTCCTGAACACCAACCTGAGGACCAAGTCACTACTGCACTGCTTC
AACGTCTCGGAGGCAAAGGCACTCATCGTGGGACAAGATGAG

Coding sequence (CDS) from alignment at Sc0000048:68320..68911+

>transcript:BL87297_cuf0 ID=transcript:BL87297_cuf0|Name=transcript:BL87297_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=492bp|location=Sequence derived from alignment at Sc0000048:68320..68911+ (Branchiostoma lanceolatum)
ATGGTAAAGCCACTAGAAGGAGCATTGTATGCTGCTGTTGGCGGCATATC
TTCAGCCGTTCTAGCCGCCCAAGTCATTTATCCTCACATTTGGCGAGATT
TAAAGTTAATTCGGAGACTCAGGGGACCGATCAGCCGAACACGTCAGTAC
CTATCGGCAGAGCCGCCGATCACCATAGTGGACCGCTTCCTGCACCAGGT
TCAGCTCCAGCCCGACAAGCCCTTCCTCCTGTTCGAGGATGAAGTCTACA
CCTACAAGGACATGGACGTCATGTCCAACAAGGTGGCCAACTTCTTCCGG
GGGGAGGGCTACAGGTGCGGGGACACCGTCGCCATGTTGATCTACAACGA
GCCGGCCTTCATCTGGACCTTCCTGGGACTGGCCAAGTTGGGGGTGAAGA
TGGCGTTCCTGAACACCAACCTGAGGACCAAGTCACTACTGCACTGCTTC
AACGTCTCGGAGGCAAAGGCACTCATCGTGGGACAAGATGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL87297gene:BL87297Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL87297_cuf0-E1BL87297_cuf0-E1-1564476830-220268Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL87297_cuf0transcript:BL87297_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000048genomeSc0000048:68320..68911 +
Properties
Property NameValue
Transcript idBL87297_cuf0
Biotypeprotein_coding