transcript:BL87357_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL87357_cuf0
Unique Nametranscript:BL87357_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL87357_cuf0

>transcript:BL87357_cuf0-protein ID=transcript:BL87357_cuf0-protein|Name=transcript:BL87357_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=422bp
DLPDTVKVAVGARVMLCRNVNVEDGLVNGAFGTVTGVIGGQNAAGEVATV
FVQFDNSKAGALERQRSAVPSNLPDNSVPIRQIEDNLNNRSKAKRYQIPL
KLAWACTVHKVQGMTVPEVVVSMKKMFASGMSYVALSRVCSIGGLFITDY
KQESIYCDGEVQGAVNKMKHFEFVSNPFATVGNSSAKEVLKLNIVHHNTE
GLVSHFKSLKSTCLVNADIICLTETWLSENVQSSQVQLDGFSMFRKDRSR
GHAGEEGSSVTINSPHGGVAVYVRDVYGCEEIHIPDDINLECVAMQVSAD
CTKHLIVAIYRPPNVRKDPFVSSLDRLLHHLSSVERNSTVILGDFNENLK
SSEENKKILSFFMRSHYQQLIEAPATAKGTLIDHVYISAASATVHHGVIQ
TFYSYHDAVYCILCDDEDQCED
Run BLAST on NCBI

mRNA from alignment at xpSc0039870:3184..6738-

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL87357_cuf0 ID=transcript:BL87357_cuf0|Name=transcript:BL87357_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3555bp|location=Sequence derived from alignment at xpSc0039870:3184..6738- (Branchiostoma lanceolatum)
GACCTCCCCGACACGGTCAAAGTTGCAGTCGGTGCGCGGGTCATGCTTTG
TAGAAATGTCAATGTCGAGGATGGTCTAGTGAATGGTGCGTTTGGAACAG
TGACTGGTGTGATAGGTGGTCAGAATGCTGCAGGTGAAGTTGCAACTGTC
TTCGTTCAGTTTGATAACTCGAAAGCAGGTGCTCTCGAAAGGCAAAGAAG
TGCAGTTCCTAGCAACCTACCCGACAATTCAGTGCCAATACGTCAGATTG
AGGACAACTTGAACAATCGTAGTAAAGCCAAACGTTACCAGATTCCCCTC
AAGCTAGCTTGGGCCTGTACAGTACATAAAGTACAGGGCATGACTGTACC
TGAAGTAGTTGTCTCGATGAAAAAAATGTTTGCATCAGGTATGTCGTATG
TGGCATTAAGCAGGGTTTGTTCCATAGGCGGTCTATTCATCACAGACTAC
AAGCAGGAGTCTATCTATTGTGATGGGGAAGTGCAGGGGGCAGTCAATAA
GATGAAGCACTTCGAATTTGTATCCAACCCGTTTGCAACTGTTGGTAACA
GCTCTGCAAAAGAAGTCCTCAAGTTGAACATTGTCCATCACAACACCGAA
GGACTTGTAAGTCACTTTAAAAGTCTAAAGTCTACATGTTTGGTCAATGC
TGATATCATATGTCTGACTGAGACATGGCTATCAGAGAATGTGCAGTCCT
CTCAGGTGCAGTTGGACGGTTTTAGCATGTTTCGCAAAGATAGGTCAAGA
GGGCATGCTGGCGAGGAAGGTTCTAGTGTGACAATTAATTCCCCTCATGG
AGGTGTGGCAGTGTATGTCCGTGATGTATACGGGTGTGAAGAAATTCACA
TCCCAGATGATATCAACCTAGAATGTGTGGCTATGCAGGTTTCTGCTGAC
TGCACGAAACATCTCATTGTAGCCATTTATAGACCGCCAAATGTGCGCAA
AGACCCATTCGTATCCAGTTTGGATAGACTGTTGCATCACTTGTCTTCAG
TGGAAAGAAATAGCACAGTCATTCTTGGTGACTTCAATGAAAATTTGAAG
TCAAGTGAGGAAAACAAAAAGATTCTATCATTTTTTATGAGAAGTCACTA
TCAACAGTTGATAGAGGCTCCTGCAACTGCGAAAGGAACTCTCATAGATC
ATGTGTATATTTCAGCAGCATCAGCCACTGTCCATCATGGAGTGATACAG
ACATTCTATAGCTACCATGATGCTGTCTACTGTATATTGTGTGATGATGA
AGATCAGTGTGAAGACTAAGGCAAGGTTCTGCCTTTGCCAAACCTGTTGG
TTGACAAGAGGAAATAAAAATGACCTGGCAAGGGGGAGCCTGGTGGGTGC
TCCATGACTGGGAGCCTGTGAATGTCATATTGCACCAGCGTCTGCCCTTG
TCACCCGGCACATTTGGTGGTGGCAAGAGAGATGGGGAAGGACAAAGTGT
CCCGCTCCGCTCTTGCCAAAATAACCTGGCAAGGGGGAGCCTGGTGGGTG
CTCCATNCAAAATGACCTGGCAAGGGGGAGCCTGGTGGGTGCTCCATGAC
TGGGAGCCTGTGAATGTCATATTGCACCAGCGTCTGCCCTTGTCACCCGG
CACATTTGGTGGTGGCAAGGGAGATGGGGAAGGACAAAGTGTCCCGCTCC
GCTCTTGCCAAAATAACCTGGCAAGGGGGAGCCTGGTGGGTGCTCAATGA
CAGTGTAGCCTGAGTACCAACCTCCGTAGTGACCGCTGGCTCCAAAAAAT
TCGCTTGCTAACATAGCAAGCGAATTTTTTTAAGCCAGCGGTCACTACGG
AGGTTGGTACTCAGGCTAATGACTGTGAGCCTTTGAATGACATATTTGCA
CCAACTCCCCACCTTGCCATCCCACACATTTAGTGGGGGATGGGAGCATT
GGGAAATACCTAGCCAAGGGGGAGCCAGATGGATGCTCCATGATCAGAAG
CCTTGTTGATTTAAGAATAATCCATGTCAATACTTTTTTTGTTACTGCCA
ATTTGTCATTTGCTTTTGTTATTATAATTAGAATGTTATATCAAATCTCA
GGTCATGTTGCTTGATTATGGTTTTTATATCATTCATTTCATTTAAGTGT
TCCTCCTGTCAGTTTTACCTTGCTTGTGCAATATTGTACGAGTAAATGTA
TTCATATCTCTGTCATTGTCATAATCCATTGAAAAGCATTCTGCATAACA
TTTTGAGAGGTCACCAGTCAGCAGCCCCAGCAGCAATACATCACGACGAC
CAAAAAAAGAGCTCAATGAAACAAATATATTTCATATTGACTGAATACTT
TTTAATTTTCAAATGTGTTATTTGAATTGATCAAATACTTATTATTTTAT
TTTATTCTATATATTCTATATATCGTTATTTTCCCATTATTTTTAAAGCA
TTTTCCATAACATCTAAGGAGGTGTCCACTTAGGCACTCTTGACAGTGAT
ATTAGTGTACATAAAAATGAATAAAGTGTCTCTATTTCTTTAATTCTCAG
ATAATAAGGGGTAAAATCAGTTAGAAGATCACCTTCATGGCATACTAGAG
GTAAGGCCTGTTTTCTTCTAACACTATCCTTACATATAGATGAAATGTGT
GAAGGCACTGGTCCAACATGGGCATCTCCAATACCAAAACTGTTTTCTTC
TGAGACAGTAGACTCAATATGTGTGGTTTCTAAATTTATTCAACGATTGT
ACTCTACTTTGACATACCAAATCTCATTCTCCTGTTTCTGTCCTACAGGT
AGGACCCCTCCGAGATGGAAGCAGAACGTGTTCCATGAGAAACCGGATGG
GGATGGAGCAGACAGACCCGGATTGCAACTAATTCTTGGATTATGTATAT
TTTGACACAATTGTACAGTTTCCTTTTTTTTGCAATTTGGGCTTCAATAT
GTACATATTTTGTCATTTACATAGTACATACATGCAATAAGATGGTAATA
TGAGTTTCAATTTTTGTAAGTAAAGTTGTCTGGATTGGTAGTGTTTTTTT
TAAAAACTGTATCTTTTCATATGACCAAGTATACAAAAAATGAATAGATT
TTGGGACAATCTTTTTATCATTTCTTAAAACCATTAACATACATGCGATA
AAATTGTGGGGAAAATATGAATTTACAATTTTGTAAGTAAAGCTCTCTAG
TAGAGTTGCATAATATTGTTTCTTTGCATATAGTGTATAATATTGTATGT
TTGCAAATTTTCCCATGGTGTTGCATAGTATTGTATCTTTACATATAGTG
TATAGTATTGTACTGTATCTTTGCACATGTTCAAGCATGTTGATGAATGT
ATATGAAGTATAAATAGATCTTGGGACAGTCTTTTTATGTCCATTTCTGC
AAAACGTCCATTGTTGCATGGGGGGAGTGAAATATACTGTGTTTGCCTGC
AAGCAAATGACGACCTTTCTATAGTCTTTTTCACTGATTGACTGTTCATG
GCAGCATGTTCAACAAAGGGCCCCACATAGAAATTTACTAGAAACAACTG
GTAGAGAGATTTTTTTGCCCAGGTGTTATTTTGGGACAGCCCACTTCTTC
CATGG

Coding sequence (CDS) from alignment at xpSc0039870:3184..6738-

>transcript:BL87357_cuf0 ID=transcript:BL87357_cuf0|Name=transcript:BL87357_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1269bp|location=Sequence derived from alignment at xpSc0039870:3184..6738- (Branchiostoma lanceolatum)
GACCTCCCCGACACGGTCAAAGTTGCAGTCGGTGCGCGGGTCATGCTTTG
TAGAAATGTCAATGTCGAGGATGGTCTAGTGAATGGTGCGTTTGGAACAG
TGACTGGTGTGATAGGTGGTCAGAATGCTGCAGGTGAAGTTGCAACTGTC
TTCGTTCAGTTTGATAACTCGAAAGCAGGTGCTCTCGAAAGGCAAAGAAG
TGCAGTTCCTAGCAACCTACCCGACAATTCAGTGCCAATACGTCAGATTG
AGGACAACTTGAACAATCGTAGTAAAGCCAAACGTTACCAGATTCCCCTC
AAGCTAGCTTGGGCCTGTACAGTACATAAAGTACAGGGCATGACTGTACC
TGAAGTAGTTGTCTCGATGAAAAAAATGTTTGCATCAGGTATGTCGTATG
TGGCATTAAGCAGGGTTTGTTCCATAGGCGGTCTATTCATCACAGACTAC
AAGCAGGAGTCTATCTATTGTGATGGGGAAGTGCAGGGGGCAGTCAATAA
GATGAAGCACTTCGAATTTGTATCCAACCCGTTTGCAACTGTTGGTAACA
GCTCTGCAAAAGAAGTCCTCAAGTTGAACATTGTCCATCACAACACCGAA
GGACTTGTAAGTCACTTTAAAAGTCTAAAGTCTACATGTTTGGTCAATGC
TGATATCATATGTCTGACTGAGACATGGCTATCAGAGAATGTGCAGTCCT
CTCAGGTGCAGTTGGACGGTTTTAGCATGTTTCGCAAAGATAGGTCAAGA
GGGCATGCTGGCGAGGAAGGTTCTAGTGTGACAATTAATTCCCCTCATGG
AGGTGTGGCAGTGTATGTCCGTGATGTATACGGGTGTGAAGAAATTCACA
TCCCAGATGATATCAACCTAGAATGTGTGGCTATGCAGGTTTCTGCTGAC
TGCACGAAACATCTCATTGTAGCCATTTATAGACCGCCAAATGTGCGCAA
AGACCCATTCGTATCCAGTTTGGATAGACTGTTGCATCACTTGTCTTCAG
TGGAAAGAAATAGCACAGTCATTCTTGGTGACTTCAATGAAAATTTGAAG
TCAAGTGAGGAAAACAAAAAGATTCTATCATTTTTTATGAGAAGTCACTA
TCAACAGTTGATAGAGGCTCCTGCAACTGCGAAAGGAACTCTCATAGATC
ATGTGTATATTTCAGCAGCATCAGCCACTGTCCATCATGGAGTGATACAG
ACATTCTATAGCTACCATGATGCTGTCTACTGTATATTGTGTGATGATGA
AGATCAGTGTGAAGACTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL87357gene:BL87357Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL87357_cuf0-E1BL87357_cuf0-E1-1564476830-558523Branchiostoma lanceolatumexon
BL87357_cuf0-E2BL87357_cuf0-E2-1564476830-558520Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL87357_cuf0transcript:BL87357_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xpSc0039870genomexpSc0039870:3184..6738 -
Properties
Property NameValue
Transcript idBL87357_cuf0
Biotypeprotein_coding