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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL88118_cuf0 >transcript:BL88118_cuf0-protein ID=transcript:BL88118_cuf0-protein|Name=transcript:BL88118_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=232bp
MCGECGYRSADRGNLSRHMRTHTGVKPYMCDQRDYSAAQKSTLDSHMAIH
TGEKPYMCGECGYRTADKGSLSKHIRTHTGEKPYKCDQCDYSATHKSTLE
SHLAKHTGEKPYMCGVCGYRTANKRNLSRHMGTNTGEKPFKCDTCDYSAA
QKCTLDSHLAKHTGEKPYRCGECGCRTIGKSPLSRHMRTHTGEKPHKCDH
CDYSAAQKYHLNRHLAKHTGEKSRNEFPSNLT Run BLAST on NCBI mRNA from alignment at Sc0000519:9278..12222+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL88118_cuf0 ID=transcript:BL88118_cuf0|Name=transcript:BL88118_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2945bp|location=Sequence derived from alignment at Sc0000519:9278..12222+ (Branchiostoma lanceolatum)
CAGGATTTGTGAAGGTAAAAATCAACCCTGGAAGCAGGTAAGAATGTGAA
TCATGTTAAATGACTATCATTCCGTGCCGCAGAGGAGCTATAGGTCGTTT
CTTTGATGTACGGGGCACATTAGGACGGAATGTAAGGCTTTTCTGTGTCA
CCACACGTCACGAGGCAAAATAGTCGTTTTTGTCAGAAAAACTCCACAAA
GGGTGTTACAGAACCACCAAAATGAGACAGAAGTACATTCGAAAACATGA
GATCGGAAGACTTTACAAATATGGTTTGTAAAGCAGATTCGAAAGTGAAG
AGGGGGGGGGGGTACACGTGGGTCATGTTTGGAGGTAATTAAATGGGAGT
GGTGGCTGCAAAGTCGTTGTGGCAGCTTCCTGGTTTTGGAATCAGCAGAA
AAATCATCTTTAATCTTTATTATCAACATGGCAGGAATACAAGTAATTTA
TACAATGTCACGGTATCATATGTACCCCTGAATTGCGTTGATCTTACACT
CCCATCTATACACACAACGCAACAAAGAAGACAAAAACCGGAAATCAACA
CAAAATGCACTCTTGACTTAAATCATTTTTTATTGATGTGTTTCACATTT
TAAATGTATTTGTCTATTAGGTTAGACATGGCAGAAGCAGGTAATGGGTC
TCTCACTGCAGTTCCCAAGAGCTTTTGTGATGGGTCTCCTACTGGAGTTT
CATCGCTCAGAAATGCAAACAATATTGAAGACAAGCCAGAAGCACAAACT
GATGAGAAACCCTACATGTGCGGTGAGTCTGGGTACAGGTCAGCTAAAAC
ATGTGGCCTAACCGGACATAGGAGAATCCATATGGGTAAAAAATCTTACA
TGTGTGACCAGCGTGCCTATTCTGATGCAGATAAATCCGCCTTGGACAGC
AATCTAGCAATTCATATGGGTGAAAAACCCTACATGTGCGAGAAATGCGG
GTACAAGACAGCAAACAAGAATGACCTACATATATATAGCTACTTAGACA
TATAAGAACCCATACTGGTGAAAAGCCCTACAAGTGTTACCAGTGTGACT
ACTCTGCTGTACAGAAATCCGCATTGAAGAGACATCTAGCAAGACACTCT
GGACAAAAACCCTACATGTGCGGAGAGTGCGGGTACAGGTCAGCTGACAG
GGGTAACCTATCCAGACATATGAGAACCCATACTGGTGTAAAACCCTACA
TGTGTGACCAGCGTGACTATTCCGCTGCCCAGAAATCAACATTGGACAGT
CATATGGCCATACACACTGGTGAGAAACCCTATATGTGTGGGGAGTGCGG
GTACAGGACAGCTGACAAGGGTAGCCTTTCCAAACATATCAGAACCCATA
CAGGTGAAAAACCCTACAAGTGCGACCAGTGTGATTATTCTGCAACACAT
AAATCCACCTTGGAGAGCCATCTAGCCAAACACACTGGTGAGAAACCCTA
CATGTGTGGGGTGTGCGGGTACAGGACGGCTAACAAGCGAAACCTATCCA
GACATATGGGAACCAATACTGGTGAAAAACCCTTTAAGTGTGACACGTGT
GATTATTCTGCTGCACAGAAATGTACCTTGGACAGCCATCTAGCAAAACA
CACTGGTGAGAAACCCTACAGGTGTGGAGAGTGCGGGTGCAGGACTATCG
GAAAGTCTCCTTTGTCCAGACATATGAGAACCCATACTGGTGAGAAGCCC
CACAAGTGTGACCATTGTGACTATTCCGCTGCACAGAAATACCATTTGAA
CCGACATCTAGCAAAACACACTGGTGAAAAATCCCGAAATGAATTTCCGT
CAAATCTAACATAGGCTATCCTGACAGCTAGATTTGTACTGACATCCTAC
AAAATATTGTGCTTCAGTGTAAGTCAGAGGCTTTAACGAGTGTGGATAAA
GTTAAAGGCTGTGATGTTTACTTGCTCCCTTATTTGCCAACCTGTAACAT
TTTACACTATATTATATTGGAACAATAATGATTATACTATACCTGAAGTG
TTTAACATTATGAAGAATTGTGAAGCTTGTGTTATACGAAGCAATTGCCA
TAGCTGACTGATATGTAAGGACGCAGTTCATTCAAAAAAGAGTTCCACGA
CCTCATATATCCATGAACAATTCTATTTATGCAAATGACCTACACATTTA
CATAATATATGCTTAATCATAAACACCTTTATCTTACTTACACATGTTGC
GATATTGACAGTGCTATAATTTTCCAATTTGATGACTTTTGGTGTTTTTG
CTTTAATTATGCAAATCAGGAATTTATTTGCATAATTGGTATCTGTTGAT
GCTCCACTTTTCATAAACTACATATGTTACATGTATTTGAGTTTATATTG
GAAAACACTGCAAATATAGATTTTCCTCATTAGCTATGCAAATTAGGTCC
CAATTAGCACAATTTACACGTTATTGTGTATATCTCTGTCTAAGCTACCT
GCATACTCAATATCATGGAAATCCGTTGTTCCTTTGTTCAGTTATTCTCC
TTATAAGATTTTCACAATAACGCCCTTGCAGTTCCAGAGCAAGCTGCTAG
GGGGCCTGTAGCGTCGCACGTTACTCAAGAATCACACAGACACAAGCACG
TCTACTCACTAGTCGTGTATTCTAGCGTCTGCACTAAATTACATCTGGCA
GGAGGGTTCATACTGCATCCGGTGTAGAGTTACTAGGATTAGAGTGGCCA
ATATAAAGTATCACATGTTTCACATCACTACATCCCTCTTTTCCTGAGAC
ATGCATTATACAATGTATATAGACTATCAAACTCATGCATTACTCAATTA
CTGCTACTTGTTAATTCCATGCATTATCAACTATACTTCGAATTTTAGCT
TTATACTAGACAGTCCATTTCCGTATTCATTGTCCGTATTCATTGTCCTG
GATCGTGGAGTTTATTTCTTTCCACTCCTTATCAATAAATCAGTC Coding sequence (CDS) from alignment at Sc0000519:9278..12222+ >transcript:BL88118_cuf0 ID=transcript:BL88118_cuf0|Name=transcript:BL88118_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=699bp|location=Sequence derived from alignment at Sc0000519:9278..12222+ (Branchiostoma lanceolatum)
ATGTGCGGAGAGTGCGGGTACAGGTCAGCTGACAGGGGTAACCTATCCAG
ACATATGAGAACCCATACTGGTGTAAAACCCTACATGTGTGACCAGCGTG
ACTATTCCGCTGCCCAGAAATCAACATTGGACAGTCATATGGCCATACAC
ACTGGTGAGAAACCCTATATGTGTGGGGAGTGCGGGTACAGGACAGCTGA
CAAGGGTAGCCTTTCCAAACATATCAGAACCCATACAGGTGAAAAACCCT
ACAAGTGCGACCAGTGTGATTATTCTGCAACACATAAATCCACCTTGGAG
AGCCATCTAGCCAAACACACTGGTGAGAAACCCTACATGTGTGGGGTGTG
CGGGTACAGGACGGCTAACAAGCGAAACCTATCCAGACATATGGGAACCA
ATACTGGTGAAAAACCCTTTAAGTGTGACACGTGTGATTATTCTGCTGCA
CAGAAATGTACCTTGGACAGCCATCTAGCAAAACACACTGGTGAGAAACC
CTACAGGTGTGGAGAGTGCGGGTGCAGGACTATCGGAAAGTCTCCTTTGT
CCAGACATATGAGAACCCATACTGGTGAGAAGCCCCACAAGTGTGACCAT
TGTGACTATTCCGCTGCACAGAAATACCATTTGAACCGACATCTAGCAAA
ACACACTGGTGAAAAATCCCGAAATGAATTTCCGTCAAATCTAACATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000519 | genome | Sc0000519:9278..12222 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL88118_cuf0 |
| Biotype | protein_coding |
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