transcript:BL88646_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL88646_cuf0
Unique Nametranscript:BL88646_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL88646_cuf0

>transcript:BL88646_cuf0-protein ID=transcript:BL88646_cuf0-protein|Name=transcript:BL88646_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=236bp
MFSIGCPSGYTAYGGACFKAYNQDKTYNQARQVCAADGGLLAMPKDVDTD
NFLRDLKNAVNEISRFWFGLNDQKDEGEWMWEDGTPHNKTTDWDSWQLGE
PNEGGEDCANYDGSEWNDAPCSSAYKFICQRKEGISCSLGYYRCGHGRAC
IQSWKRCDGVTDCTDGSDEDGCVCLPIPGDFQLDSRLAMLPNQLGQMTFE
EIQNSSVMELLNSSYSTQRKYHPELREFVSTVIFPQ
Run BLAST on NCBI

mRNA from alignment at Sc0000058:1328685..1331974+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL88646_cuf0 ID=transcript:BL88646_cuf0|Name=transcript:BL88646_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3290bp|location=Sequence derived from alignment at Sc0000058:1328685..1331974+ (Branchiostoma lanceolatum)
CAGGGAGGGACAGACGAACGTCAAGAGTTCGGCGGGTTCCAGGGAACAGC
GCGGTTTTGGAGGTTCGTGATCACTCGGACCCACTCGGGCCACGCTCAGC
CGTATCTCAGAGAACTGAACCTCTTCGGACTTTCATCAGGTAAGAGAAAC
TGTCATCCTTGTTTTGTAACCTATTTAAATATCGATACTAGAAAGGTTCA
CAGAAAAATGCCACCGGTCATAGTACAATGCTAAACTTTAATCCAACACT
AAGGTATTCCTGGATCAAATTTTCAACGACCACTGTCGCCTTCTTTAGTA
TCAACACCACTTCCGAACGTAAACTCGCGAGACCTACAGACACGTGACTT
TATTGACCCGAGTCTTTACGGATACGTGACGTCAGAAATTGGCCAAACGT
GCCAGGAAGTTTATAACGCCCACTGTCTCTGTTTAGTGATGGCTGGAATG
CCCTGATGTATATGGCCTTCTTTATACCTCTCATAAAGTAGTCCTGTTCA
GTCCTTACTGATTCTTAGGAAGACGGCTGTGGTCGTTGAAAATTTGATCC
GTGAATACCTTAGTGTTGGAAGAAAGTTTAGCATTGTATTATGACTACTA
CCAACACTGATGAGATTCTATGATAGTCACCGGTCATGCTTTGAAATTAG
GAAGCACTGATACTAGGTTGAACGGCACATAGTTTATATCACACGTGGCG
TGAATTAAGCAAAGGGACTTAACGATATAGCAACAAAGGTGTGCTGCGAT
TTCCTGCGATATCGCATATTATAGCAATATTGAACGAAATATGCACATTG
AAGAGACGTCACATTACGATAAACGATGTCACACGACGTAACGATGAAAC
GCAACGTTGATACACTGCAAATCATATTATCATAATGCGATATTGTAGGA
AATCTTAGCTCGCTATATCGTTGCTATATATCTTACACACAACACTGTAC
ACGTATTTTCGCTTGTGCAAGGTACACTTTCTAATACGATATTTTGACAC
GGAAATGTAATGGAGTATAAAGGGACATCGTTCATGAAGGCCCTTATGTT
CATTCGAAACGGCATTTTATTCACACTATACTTGCAGCATCGTAGACGTT
CATACGTTTATCTAAAGTATCATTTTTACGGAATGTTGACACAAAAGTGA
TGCTATCTAATCATGGGGTACGCTTTCATGAAAAATTCTCTACTATTACT
TCTTGCGCATGCTGCTTGTGGCAACTGGGTCTTGACTAGCAATATTTTGC
TTTACAAATCCATATTTCAGGGTGTTCCTCGCACAATGGAGGGTGTCAGG
AGTTATGCCTTGTGCACCCAGAAGGAATAAAGTGTGCCTGTCGGGATAAC
TGGGACCTGCAAGAAGATGGAGTGACCTGTGAGTAGCATTTGGCGAGATT
TTACTTCGCTTTTGGACAGACAAGTACGACGTGGCACTGCACTCAAGTAT
TTCATACTTATTTTAACAGTGCCACGTACAGATATTACAATATACCCATT
TTTACACTCATCTTAGACCATCCTCATCATATTTGCAAGAGTGATAAAGA
CGGTCTAAGATGTGTCGAAATCAGCTGAAAATTCAACAAATTCCATTTTC
GTAAAGCTAGGGGTGTGATGTTTTCTATAGGTTGTCCTTCTGGCTACACT
GCATACGGGGGTGCATGCTTCAAGGCGTACAACCAAGACAAAACCTACAA
CCAGGCCAGACAGGTGTGTGCAGCGGACGGAGGGCTCCTGGCCATGCCGA
AGGACGTAGATACTGACAACTTCTTGAGGGATCTGAAGAATGCAGTAAAT
GAAATCTCACGTTTCTGGTTTGGTCTAAATGATCAGAAAGATGAGGGTGA
GTGGATGTGGGAAGACGGGACTCCACACAACAAGACTACTGACTGGGACA
GCTGGCAGCTGGGGGAACCGAACGAGGGAGGAGAAGACTGTGCGAACTAC
GATGGTTCAGAATGGAATGACGCACCGTGCTCCTCTGCTTACAAGTTTAT
CTGCCAGCGGAAAGAAGGTACAGTAAATGCATTTAAGTTCGCGTGGTTTT
TACTTCGCGGTAGGGAGAAAATGGAGTGTTCGCGGTGGTTTTAAGTTCGC
GTTTGAAACAATTAGTAGGGTTGCAGTCATAGGTGGGCAAAAAGTTTCGC
GGTGGTTTGAAGTTCACGCTGCAACCTCACCGCGAAAACCGCAAACATAA
AGCCATCGCTAACATTTCTGCATTTACAGTATATTATTTTATCATGCATT
TTACGTAAGATAAACATTAACGTTGTTACGTTAACCTCTGGAAAATTGAA
GTTCCGTCATTGCCCTGAAAGAACTTGTAGGCCTAATGATAGCAATTGTT
TCATCACTAGAAAGAAATTTGCAAATTGGAACTTAATTTGAACATAAAAA
GTAAAATTTTATAATTCCAGTGTTTTGTACAAAAGGACTCGAATAAATGT
AACATATTTAGTTTATAGCAGATGAAACATTCATAGGTACCAATTTTGCA
ATAGCTTCCTAATTTTCATAATCAAATGCAAAAGCGACATAGTTAATCTA
AGTGATAGATGACAGGAATGTCAACATTGTGACATGTGTAAATTAGTTAA
AGGTGTACATCACCAAGAATACATTATGTAAATGTGGAAGTCATTTGCAT
AGTCAAAATATTTCATGGGGTAGGTTACGTTCCTCTGCAGATCGTAGCAT
GAGTGATGCAATATGATAACGTATGAATATGTTATTACATAACCGTAGTG
AAGATATGATTTTCTTTAGATAAAGCAAAATCATTTGTGAAGAACTCTAC
TTCCTAACTGTTTACATGGCACAGGAATCAGCTGCTCCCTAGGATACTAT
CGCTGTGGACACGGGCGCGCATGTATCCAATCATGGAAGCGTTGTGATGG
AGTCACGGACTGTACGGACGGGAGTGATGAGGACGGTTGTGGTAAGCCAA
TCAATGGCATCTCTTCTCAAACAAAACAAAATGGCCGTCATCAACTAATT
CCAGTCCTCTCTAGTCTTCTAGTTACCTACGGTCCCTAATGCTTGTCGTC
TCAGTATCAAAATCATGTGACATGACATAATTTTTTCTAACGTTTCAGTG
TGCCTGCCAATACCTGGGGATTTTCAACTCGACAGTAGACTGGCAATGCT
ACCGAACCAGCTGGGCCAGATGACGTTTGAAGAAATACAGAATTCCTCAG
TCATGGAGCTGCTCAACAGTTCGTACAGCACACAAAGAAAGTACCACCCA
GAGTTGAGAGAATTCGTATCGACGGTCATTTTCCCGCAAT

Coding sequence (CDS) from alignment at Sc0000058:1328685..1331974+

>transcript:BL88646_cuf0 ID=transcript:BL88646_cuf0|Name=transcript:BL88646_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2124bp|location=Sequence derived from alignment at Sc0000058:1328685..1331974+ (Branchiostoma lanceolatum)
ATGTTTTCTATAGGTTGTCCTTCTGGCTACACTGCATACGGGGGTGCATG
CTTCAAGGCGTACAACCAAGACAAAACCTACAACCAGGCCAGACAGGTGT
GTGCAGCGGACGGAGGGCTCCTGGCCATGCCGAAGGACGTAGATACTGAC
AACTTCTTGAGGGATCTGAAGAATGCAGTAAATGAAATCTCACGTTTCTG
GTTTGGTCTAAATGATCAGAAAGATGAGGGTGAGTGGATGTGGGAAGACG
GGACTCCACACAACAAGACTACTGACTGGGACAGCTGGCAGCTGGGGGAA
CCGAACGAGGGAGGAGAAGACTGTGCGAACTACGATGGTTCAGAATGGAA
TGACGCACCGTGCTCCTCTGCTTACAAGTTTATCTGCCAGCGGAAAGAAG
GAATCAGCTGCTCCCTAGGATACTATCGCTGTGGACACGGGCGCGCATGT
ATCCAATCATGGAAGCGTTGTGATGGAGTCACGGACTGTACGGACGGGAG
TGATGAGGACGGTTGTGTGTGCCTGCCAATACCTGGGGATTTTCAACTCG
ACAGTAGACTGGCAATGCTACCGAACCAGCTGGGCCAGATGACGTTTGAA
GAAATACAGAATTCCTCAGTCATGGAGCTGCTCAACAGTTCGTACAGCAC
ACAAAGAAAGTACCACCCAGAGTTGAGAGAATTCGTATCGACGGTCATTT
TCCCGCAAATGTTTTCTATAGGTTGTCCTTCTGGCTACACTGCATACGGG
GGTGCATGCTTCAAGGCGTACAACCAAGACAAAACCTACAACCAGGCCAG
ACAGGTGTGTGCAGCGGACGGAGGGCTCCTGGCCATGCCGAAGGACGTAG
ATACTGACAACTTCTTGAGGGATCTGAAGAATGCAGTAAATGAAATCTCA
CGTTTCTGGTTTGGTCTAAATGATCAGAAAGATGAGGGTGAGTGGATGTG
GGAAGACGGGACTCCACACAACAAGACTACTGACTGGGACAGCTGGCAGC
TGGGGGAACCGAACGAGGGAGGAGAAGACTGTGCGAACTACGATGGTTCA
GAATGGAATGACGCACCGTGCTCCTCTGCTTACAAGTTTATCTGCCAGCG
GAAAGAAGGAATCAGCTGCTCCCTAGGATACTATCGCTGTGGACACGGGC
GCGCATGTATCCAATCATGGAAGCGTTGTGATGGAGTCACGGACTGTACG
GACGGGAGTGATGAGGACGGTTGTGTGTGCCTGCCAATACCTGGGGATTT
TCAACTCGACAGTAGACTGGCAATGCTACCGAACCAGCTGGGCCAGATGA
CGTTTGAAGAAATACAGAATTCCTCAGTCATGGAGCTGCTCAACAGTTCG
TACAGCACACAAAGAAAGTACCACCCAGAGTTGAGAGAATTCGTATCGAC
GGTCATTTTCCCGCAAATGTTTTCTATAGGTTGTCCTTCTGGCTACACTG
CATACGGGGGTGCATGCTTCAAGGCGTACAACCAAGACAAAACCTACAAC
CAGGCCAGACAGGTGTGTGCAGCGGACGGAGGGCTCCTGGCCATGCCGAA
GGACGTAGATACTGACAACTTCTTGAGGGATCTGAAGAATGCAGTAAATG
AAATCTCACGTTTCTGGTTTGGTCTAAATGATCAGAAAGATGAGGGTGAG
TGGATGTGGGAAGACGGGACTCCACACAACAAGACTACTGACTGGGACAG
CTGGCAGCTGGGGGAACCGAACGAGGGAGGAGAAGACTGTGCGAACTACG
ATGGTTCAGAATGGAATGACGCACCGTGCTCCTCTGCTTACAAGTTTATC
TGCCAGCGGAAAGAAGGAATCAGCTGCTCCCTAGGATACTATCGCTGTGG
ACACGGGCGCGCATGTATCCAATCATGGAAGCGTTGTGATGGAGTCACGG
ACTGTACGGACGGGAGTGATGAGGACGGTTGTGTGTGCCTGCCAATACCT
GGGGATTTTCAACTCGACAGTAGACTGGCAATGCTACCGAACCAGCTGGG
CCAGATGACGTTTGAAGAAATACAGAATTCCTCAGTCATGGAGCTGCTCA
ACAGTTCGTACAGCACACAAAGAAAGTACCACCCAGAGTTGAGAGAATTC
GTATCGACGGTCATTTTCCCGCAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL88646gene:BL88646Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL88646_cuf0transcript:BL88646_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL88646_cuf0-E1BL88646_cuf0-E1-1564476830-242160Branchiostoma lanceolatumexon
BL88646_cuf0-E2BL88646_cuf0-E2-1564476830-242163Branchiostoma lanceolatumexon
BL88646_cuf0-E3BL88646_cuf0-E3-1564476830-242165Branchiostoma lanceolatumexon
BL88646_cuf0-E4BL88646_cuf0-E4-1564476830-242168Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000058genomeSc0000058:1328685..1331974 +
Properties
Property NameValue
Transcript idBL88646_cuf0
Biotypeprotein_coding