transcript:BL95865_evm3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95865_evm3
Unique Nametranscript:BL95865_evm3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95865_evm3

>transcript:BL95865_evm3-protein ID=transcript:BL95865_evm3-protein|Name=transcript:BL95865_evm3|organism=Branchiostoma lanceolatum|type=polypeptide|length=212bp
MIHKLPTPSIYERHIFYVDFHQFGLQQPMYINLVRDPLEHRITGYYYMRF
GRVGQNLTAYQKHRRTDEQKAQTFDECVFEKGWECSDKGPQAFVMTQFFC
GHDDICMKSSQAAVELAKENIRRHYAVVGVLEEFSSFLKVLEMAVPQFFR
GAHDKWREIETKKMKNQKTANKRPVSEKARKIMRERLHMDYQVYDFIKER
FHMQKIQLGIKD
Run BLAST on NCBI

mRNA from alignment at Sc0000181:240941..243316+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95865_evm3 ID=transcript:BL95865_evm3|Name=transcript:BL95865_evm3|organism=Branchiostoma lanceolatum|type=mRNA|length=2376bp|location=Sequence derived from alignment at Sc0000181:240941..243316+ (Branchiostoma lanceolatum)
ATGATCCATAAACTGCCAACTCCGTCTATCTACGAGCGGCACATCTTCTA
TGTGGACTTTCACCAGTGAGTATTCAAATCCATTCATCAGAAGGATCTAC
ACATTCACTCCATCGTCAACTGGAGTTGACGGTCTCATATATGAATATAT
CAAATGTAGATGACGTTAAACAAATCAAATGATAACCCTGAAACGACATC
TTCGATAAACTGTGCAGTCATCATACATTTTCCATCGCTTAATTCTGGTG
TGCAGACAAGCTGGCGTTTAGATATCTCGCGCTCATATTTATCTATTCAT
CAATTTCATTTCTGTTTTATTTAGCAAGGGTGGGTCTATCTCAGTGGAAG
ACATTGCTTTACAGTGGGGCCCTGGAAGACATACATAACATGTGACATCA
ACATACGTGACATGTAACAAACTAGATGTATATATACAAATAGATGTATA
TATACAAATACATACACAAAACGTGACAAAGCCATAATCCATGTATAGTC
ATTATCCACAGTCGTAATCCACAGAATCATAGACCAGTGTGGCTTACAGT
ACTTGTCTTATTCAGCCGCTGCGGCATCTGATGAGAATGTGATACTAGTT
ACTGATCTAGCTTTCTATTCCGCAAGGTTCGGGTTGCAGCAGCCCATGTA
CATCAACTTGGTCCGGGACCCTTTAGAGCATCGGATCACCGGGTATTACT
ACATGCGGTTTGGCCGAGTGGGCCAGAACCTGACAGCATACCAGAAGCAC
AGACGAACAGACGAACAGAAAGCACAGGTTTGACAGCGTCTGGATGACTA
CCCAACTTTTTAAGTTTAAGCACTTCACTGGTTTTCTTTGATTTCATACC
AGACAATGTCTGACACGTACGCGTTGAAATAGAAACTTCCATTTTCTGGA
CTTCTATATGTTCATATTTTTCTCAAACTCCGAGGAATTACACAATCATG
CGTGGAGTTTAGGATGATATTCGCAGTATTAAACCTTCCTTTGTTGTCTT
TCCAGACATTTGATGAGTGTGTCTTTGAAAAGGGGTGGGAGTGTAGTGAC
AAAGGTCCTCAAGCATTTGTGATGACTCAGTTCTTCTGTGGACATGATGA
TATATGCATGTAAGTGCTGTGCCATATAACAAGTGCGACAGACGTCTGCA
TACAGTAGTATAGTCTAGCTTGCTAAAATAGCCAGAAAAGATGAACGTGG
CCGACAAACAGGTACATGGTAACGGTTCTAATTCTATTAACGCGGTTGGC
AAAAAAGGTAAATGGTAATGGTTCTAATTCTATTATAGATTGTACTTTTA
GGTAGTAAGAATGCACGTGTTGATACATGTATTGGTGTGTGGTTTAGGTT
TGAGAGGAATTTGCACATTTGTTGTTGTACGTTAATAGGGTCTTCATTGT
TATAATATTGTTGAAAACCATCAGCAGTGCAAGTTTTATTTCAGGAAGTC
TTCCCAGATGGCAATACATTGTGTACGGAAGTGTCTTAGGACACGTAATT
ATATCCCGAAAAAGGCCCCACTAATAAGCAACATTTAAGAAATAGGAAAA
CGATTGAGGAAACGGATTGAAAAACAGTACTCTGCATCATCTTCTTCTTG
CCGATGTAAAAAAAATAAAATCACACAGAATTTTTTCTTTTTCTTAGGAA
ATCCTCTCAGGCGGCAGTTGAGTTAGCCAAAGAGAACATCAGGAGACATT
ACGCTGTGGTCGGGGTACTGGAGGAGTTCAGCAGCTTCCTGAAGGTCCTG
GAGATGGCCGTGCCGCAGTTCTTCCGTGGAGCTCATGATAAGTGGCGGGA
AATTGGTAGGTAGTGTTAAACGATGTAGTCATAGAGGTAAATGTAACGTT
GTGCGGGTTGTAGTAATAGGTTGTTGATGAAGGAATGTGTGTTGCAGTGA
GTCATGTAACTTGCGTAGTGTTGGACATATGAATGAATGAATTTATGGAT
GAGCTTTATTGCTTGACAATAGCACATGGTACAATGCATTGTACAAATTG
TCAATGTACAAACAACACTACAAAAGTAATATATCCTACAATTCTTACTA
ATAACCACGGCCACGAATCGTGGATAATAGGGTTATGTTTTGAGACACGT
GAGAGCCCAGTTATATGCTCGGGTACTTTTAATTAATTAAATAAAATAAG
AAGTGAGGCTCGATTGTATATGCGTTTCCTATCATGTTTGTTGTACTTGT
ATTTCCTCATTTCAGAGACGAAGAAGATGAAAAACCAGAAAACGGCTAAC
AAGAGACCTGTTTCTGAAAAGGCGCGGAAAATTATGAGAGAGAGATTGCA
CATGGACTATCAAGTGTACGACTTTATCAAGGAGAGATTCCACATGCAGA
AAATACAGCTAGGAATCAAGGATTGA

Coding sequence (CDS) from alignment at Sc0000181:240941..243316+

>transcript:BL95865_evm3 ID=transcript:BL95865_evm3|Name=transcript:BL95865_evm3|organism=Branchiostoma lanceolatum|type=CDS|length=3195bp|location=Sequence derived from alignment at Sc0000181:240941..243316+ (Branchiostoma lanceolatum)
ATGATCCATAAACTGCCAACTCCGTCTATCTACGAGCGGCACATCTTCTA
TGTGGACTTTCACCAGTTCGGGTTGCAGCAGCCCATGTACATCAACTTGG
TCCGGGACCCTTTAGAGCATCGGATCACCGGGTATTACTACATGCGGTTT
GGCCGAGTGGGCCAGAACCTGACAGCATACCAGAAGCACAGACGAACAGA
CGAACAGAAAGCACAGACATTTGATGAGTGTGTCTTTGAAAAGGGGTGGG
AGTGTAGTGACAAAGGTCCTCAAGCATTTGTGATGACTCAGTTCTTCTGT
GGACATGATGATATATGCATGAAATCCTCTCAGGCGGCAGTTGAGTTAGC
CAAAGAGAACATCAGGAGACATTACGCTGTGGTCGGGGTACTGGAGGAGT
TCAGCAGCTTCCTGAAGGTCCTGGAGATGGCCGTGCCGCAGTTCTTCCGT
GGAGCTCATGATAAGTGGCGGGAAATTGAGACGAAGAAGATGAAAAACCA
GAAAACGGCTAACAAGAGACCTGTTTCTGAAAAGGCGCGGAAAATTATGA
GAGAGAGATTGCACATGGACTATCAAGTGTACGACTTTATCAAGGAGAGA
TTCCACATGCAGAAAATACAGCTAGGAATCAAGGATTGAATGATCCATAA
ACTGCCAACTCCGTCTATCTACGAGCGGCACATCTTCTATGTGGACTTTC
ACCAGTTCGGGTTGCAGCAGCCCATGTACATCAACTTGGTCCGGGACCCT
TTAGAGCATCGGATCACCGGGTATTACTACATGCGGTTTGGCCGAGTGGG
CCAGAACCTGACAGCATACCAGAAGCACAGACGAACAGACGAACAGAAAG
CACAGACATTTGATGAGTGTGTCTTTGAAAAGGGGTGGGAGTGTAGTGAC
AAAGGTCCTCAAGCATTTGTGATGACTCAGTTCTTCTGTGGACATGATGA
TATATGCATGAAATCCTCTCAGGCGGCAGTTGAGTTAGCCAAAGAGAACA
TCAGGAGACATTACGCTGTGGTCGGGGTACTGGAGGAGTTCAGCAGCTTC
CTGAAGGTCCTGGAGATGGCCGTGCCGCAGTTCTTCCGTGGAGCTCATGA
TAAGTGGCGGGAAATTGAGACGAAGAAGATGAAAAACCAGAAAACGGCTA
ACAAGAGACCTGTTTCTGAAAAGGCGCGGAAAATTATGAGAGAGAGATTG
CACATGGACTATCAAGTGTACGACTTTATCAAGGAGAGATTCCACATGCA
GAAAATACAGCTAGGAATCAAGGATTGAATGATCCATAAACTGCCAACTC
CGTCTATCTACGAGCGGCACATCTTCTATGTGGACTTTCACCAGTTCGGG
TTGCAGCAGCCCATGTACATCAACTTGGTCCGGGACCCTTTAGAGCATCG
GATCACCGGGTATTACTACATGCGGTTTGGCCGAGTGGGCCAGAACCTGA
CAGCATACCAGAAGCACAGACGAACAGACGAACAGAAAGCACAGACATTT
GATGAGTGTGTCTTTGAAAAGGGGTGGGAGTGTAGTGACAAAGGTCCTCA
AGCATTTGTGATGACTCAGTTCTTCTGTGGACATGATGATATATGCATGA
AATCCTCTCAGGCGGCAGTTGAGTTAGCCAAAGAGAACATCAGGAGACAT
TACGCTGTGGTCGGGGTACTGGAGGAGTTCAGCAGCTTCCTGAAGGTCCT
GGAGATGGCCGTGCCGCAGTTCTTCCGTGGAGCTCATGATAAGTGGCGGG
AAATTGAGACGAAGAAGATGAAAAACCAGAAAACGGCTAACAAGAGACCT
GTTTCTGAAAAGGCGCGGAAAATTATGAGAGAGAGATTGCACATGGACTA
TCAAGTGTACGACTTTATCAAGGAGAGATTCCACATGCAGAAAATACAGC
TAGGAATCAAGGATTGAATGATCCATAAACTGCCAACTCCGTCTATCTAC
GAGCGGCACATCTTCTATGTGGACTTTCACCAGTTCGGGTTGCAGCAGCC
CATGTACATCAACTTGGTCCGGGACCCTTTAGAGCATCGGATCACCGGGT
ATTACTACATGCGGTTTGGCCGAGTGGGCCAGAACCTGACAGCATACCAG
AAGCACAGACGAACAGACGAACAGAAAGCACAGACATTTGATGAGTGTGT
CTTTGAAAAGGGGTGGGAGTGTAGTGACAAAGGTCCTCAAGCATTTGTGA
TGACTCAGTTCTTCTGTGGACATGATGATATATGCATGAAATCCTCTCAG
GCGGCAGTTGAGTTAGCCAAAGAGAACATCAGGAGACATTACGCTGTGGT
CGGGGTACTGGAGGAGTTCAGCAGCTTCCTGAAGGTCCTGGAGATGGCCG
TGCCGCAGTTCTTCCGTGGAGCTCATGATAAGTGGCGGGAAATTGAGACG
AAGAAGATGAAAAACCAGAAAACGGCTAACAAGAGACCTGTTTCTGAAAA
GGCGCGGAAAATTATGAGAGAGAGATTGCACATGGACTATCAAGTGTACG
ACTTTATCAAGGAGAGATTCCACATGCAGAAAATACAGCTAGGAATCAAG
GATTGAATGATCCATAAACTGCCAACTCCGTCTATCTACGAGCGGCACAT
CTTCTATGTGGACTTTCACCAGTTCGGGTTGCAGCAGCCCATGTACATCA
ACTTGGTCCGGGACCCTTTAGAGCATCGGATCACCGGGTATTACTACATG
CGGTTTGGCCGAGTGGGCCAGAACCTGACAGCATACCAGAAGCACAGACG
AACAGACGAACAGAAAGCACAGACATTTGATGAGTGTGTCTTTGAAAAGG
GGTGGGAGTGTAGTGACAAAGGTCCTCAAGCATTTGTGATGACTCAGTTC
TTCTGTGGACATGATGATATATGCATGAAATCCTCTCAGGCGGCAGTTGA
GTTAGCCAAAGAGAACATCAGGAGACATTACGCTGTGGTCGGGGTACTGG
AGGAGTTCAGCAGCTTCCTGAAGGTCCTGGAGATGGCCGTGCCGCAGTTC
TTCCGTGGAGCTCATGATAAGTGGCGGGAAATTGAGACGAAGAAGATGAA
AAACCAGAAAACGGCTAACAAGAGACCTGTTTCTGAAAAGGCGCGGAAAA
TTATGAGAGAGAGATTGCACATGGACTATCAAGTGTACGACTTTATCAAG
GAGAGATTCCACATGCAGAAAATACAGCTAGGAATCAAGGATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95865gene:BL95865Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95865_evm3transcript:BL95865_evm3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95865_evm3-E1BL95865_evm3-E1-1564476830-371621Branchiostoma lanceolatumexon
BL95865_evm3-E2BL95865_evm3-E2-1564476830-371623Branchiostoma lanceolatumexon
BL95865_evm3-E3BL95865_evm3-E3-1564476830-371625Branchiostoma lanceolatumexon
BL95865_evm3-E4BL95865_evm3-E4-1564476830-371627Branchiostoma lanceolatumexon
BL95865_evm3-E5BL95865_evm3-E5-1564476830-371629Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000181genomeSc0000181:240941..243316 +
Properties
Property NameValue
Transcript idBL95865_evm3
Biotypeprotein_coding