transcript:BL96244_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96244_cuf1
Unique Nametranscript:BL96244_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96244_cuf1

>transcript:BL96244_cuf1-protein ID=transcript:BL96244_cuf1-protein|Name=transcript:BL96244_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=273bp
FQRVKLEFSNFALPAEDEGFCTADRVQVIEGNWPDGQYSVKGTFCGSGPT
GPIYSNSSALTVVVHGIHLASTSQVTSLTDKTAVIFAEYTDAPRAQCTEA
EYWCRDGKKCVPLSLMCQGAAQCWDGSDQDVCECLSIPDGALRDMCPTQM
YTAFPNFLRHLSVPDVTNWDGFLGIKQLSSKTCHQQIRDFVCYLVVPPCS
SVTRDPPCRSWCEELKHGCGTETGWDQVPDCSAFANTDCWSGTPEVCYHG
NGENYRGVESQAATGQPCYRWEE
Run BLAST on NCBI

mRNA from alignment at Sc0000051:403628..407816+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96244_cuf1 ID=transcript:BL96244_cuf1|Name=transcript:BL96244_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4189bp|location=Sequence derived from alignment at Sc0000051:403628..407816+ (Branchiostoma lanceolatum)
TTTCCAGCGCGTCAAACTGGAGTTCTCCAACTTTGCTTTACCAGCCGAGG
ACGAGGGTTTCTGTACGGCGGATCGGGTACAGGTCATCGAAGGAAACTGG
CCTGACGGACAATACTCTGTCAAAGGTGACGTTCCACTACTTTGGTTTAC
AAAATTACCATCGAAATTGTCTGTCAAAACCATTCTTGTTTCTCATCATT
ATTTTTATTGATATGAACAATGTCTGGTTGGTGTGAATAAATCGGTTGGT
TACCGAATATTACCTTGGTTACCTTGCGAATTTTGTATACACCTTTTGGG
CCACAAAGTTATTCCAATCAGCATCATCTCATTTATCGATGAAGGTTAGA
CATCCAGGTAGTAAGATACGCAATAGAACAGTCCCTCAAGCAACTGGATA
CATTTAAAAAAAAGAGTAACCCCCTTAACATTAATCCGTCGGGTTACATA
AATCCGGGTTCGAATCCCATGACGCCACCGATGTTGTGCCCTTGGAAAAG
GCACTTTACACGACTTTCCTCACTCCACCCAGGTGTAGAAATGGGTATAT
TGTTCTCTGTACGTGGCACTGTTGAAATAAGTTATGAAAAATCTGAGTGC
NGGTGATATTACACTACTTTGGTTTACAAAATTACCATCGAAATTGTCTG
TCAAAACCATTCTTGTTTCTCATTATTATTTTTATTGATATGAACAATGT
CTGGTTGGTGTGAGTAAATCGGTTGGTTACCGAATATTACCTTGGTCACC
TTGCGAATTTTGTATACACCTTTTGGGCCATAAAATTATTCCAATCAGCA
TCATCTCATTTATCGATGAAGGTTAGACATCCAGGTAGTAAGATACGCAA
GAGAACAGTCCCTCAAGCAACTGGATACATTTAAAAAAAAGAGTAACCCC
CTTAACATTAATCCGTCGGGTTACATAAATCCGGGTTCGAATCCCATGAC
GCCACCGATGTTGTGCCCTTGGAAAAGGCACTTTACACGACTTTCCTCAC
TCCACCCAGGTGTAGAAATGGGTATATTGTTCTCTGTACGTGGCACTGTT
GAAATAAGTTATGAAAAATCTGAGTGCAGTGCCACGTCGTCCTTGTCTGT
CCAAAAACGACGTAAAACAACAAGTCATTCTCTTCATCACGCTGTTGCAC
GCTTTTTGCTCCAGGCACATTCTGTGGTAGCGGCCCCACCGGCCCGATAT
ACTCCAACAGCTCCGCGCTTACCGTGGTGGTGCACGGAATCCACCTCGCC
TCTACGTCACAAGTGACGTCACTGACAGATAAAACGGCCGTAATATTTGC
AGAATATACAGATGCTCCAAGAGGTAAGGTTTGTCAGTAATTTACGTACT
AGACTCCTCAATGATTCAATGATGATACAATGAAAAAATAATCATGAAAT
CATACCATGACTATAATCACCATTTTACATCCGTTATGCGCACATAAAGA
CCCTGTCTCACTGAACCCGCGGCACGTTGGTGGCCTCGCTGCGCCCTAAA
AAGGATTTGTTTTTCCTTTGACATCATGCAAAACGTACAAGTATGACTAA
AAAGACAACACACACACACACACGCACACACACACACAAAGCGTAAAAAG
ATCCGTTTTTCATCGATGAAATTCGTTGAGAGATGCGTCATCTTTTTTTG
TGTTTTGTTGTATTTCATATCAATCTTATCGTTTCCGCAAGCTGCCCGGC
CGGGCCCCAGGTTGATAATTGTGACCTTAGCATTAGATAGACATATACAT
GTATTGATATATTGATATACATATACATTTATTGATACATTGATATTAAC
TTGTATGTTGTTATCAGCACAATGCACGGAAGCTGAGTACTGGTGCCGTG
ACGGGAAGAAGTGCGTCCCGCTGAGCCTGATGTGTCAGGGCGCCGCGCAG
TGCTGGGACGGGAGCGACCAGGATGTCTGCGGTGAGTCGTAACAGATTTA
TCGTATTGCCAAAAGTTTCCCTTGTACCATCTACTGAGATTTTTCATATA
CAGTCATGTTACATGTACAGTCAAACCTGTACAAGTGGCCATAGTACTAG
TGCTTAAGGACCAACTGGTTAATGTGACCACTTTTGTGTGGTTCCTTAGA
TCCCATTGACACATGCATTAAGAATCCTGTCTATAGTTACCACCTGTCCA
CATAGACCAGTATCGGGTACCTGAGTGGTGTTCTTGTGCAGTTTTGCTTG
TAAAGAGTAAGGTCAGGCTCTTAGAAGAACGTGTCCATTGTGATGACGGC
CCCGGTTCAAAATTGACTTTTAAAAGTATAGATCTAGTTGCTTTACCGTC
AAACGTCAAATCGGAATGTTTCTATCCTAGAGTGGTCTTTATTTTGTATT
CGTTTTCCTACTCAAATGTGTAAATGTGGATTTAAACTTGATGAAAAATC
ATCTGTTTGTTTATTCATTAGTTTATTTGTTGTTGTTTTTAATGCAGAGT
GCCTTTCCATCCCTGACGGGGCTCTACGCGACATGTGTCCCACACAGATG
TACACGGCCTTCCCGAACTTCCTTCGTCACCTGTCAGTCCCAGACGTGAC
CAACTGGGACGGGTTTCTCGGAATAAAGCAGCTGTCCAGCAAAACCTGTC
ACCAACAGGTATGTTCTGTTAGTCATAGACAAACAGGAAATATTGCACAA
CACATATGCTCTACAGATTTTGTGACAATTATGAGAGTCAATGATGAAAT
ACATAGCAGGAATTTGTTTTTATCCTCATGGCACCGTAACACCTTGTAAA
CACTCGCTTAAGCTGACGGAAAACGTTCCTCTGACGCTTTTTTTTCTTAT
TCAATAGATCCGAGACTTTGTGTGCTACCTGGCCTTCTATCGCTTTATAG
TTTTATTCTTAAGGTCCATTCCACCAGGACGGTGCTCTCGCCACGCGCTG
TCTGCGACTTGAATTTTAACAGAGTCTTCAACGAAATTCATAGATTGAAA
ATCGCAGCCCCCAATTCCACATGACTAATCTAATTGACTTATCCTTGATT
TCATAGTTGCAATATCATGCAACATGTACGTATGGCTGAAAAGACAATGA
TTTAAAAAAATTGTGTTTTTCTACTATGAAGTTCGTTTAGTACTCAGGTC
GCAGAGAGCGTTATAGATCGTGCAACGAATTTCATCGATAAAAAATCTGA
TACCTGGTCGTCTGACGCTAGCTTTCTTTTCTCATCCCTCAGATCCGAGA
CTTTGTGTGTTACCTGGTCTTCTAACGCTTAGTTTCGGTATCCCTTAGAT
CCGAGACTTTGTGTGTTACCTGGTCTTCTAACGCTTAGTTTCGGTATCCC
TTAGATCCGAGACTTTGTGTGTTACCTGGTTTTCTCAGTTTAACACCTTA
TCTTCGTATCTCCCTTAGGTCAGAGACTTTGTGTGTTCTAACGCTTAATT
TTCTTCTTCCATTAGAATCTTTTTACACTTTGTGTGTTTTGCTTTCTTTT
CGGTCATACTTGGTCAAAGTCAAGGGTAACACAAATCCAAAGCCGCTGCA
AGGTCGCCAATGTGCCGCAGTCCAGTGACATAGCCACTTCAAGTAAAGCT
TATTTCTTTATCTCTCAGATCCGAGACTTCGTGTGTTACCTGGTGGTTCC
TCCGTGTTCCTCCGTGACGCGGGACCCCCCATGCCGGTCCTGGTGCGAGG
AGCTGAAGCACGGCTGCGGGACGGAGACCGGCTGGGACCAGGTACCGGAC
TGCAGCGCCTTCGCCAACACTGACTGCTGGAGCGGCACCCCTGAAGGTTT
GGGGGAACATTTTGTTTCTTCCATAGTAACAACATGGTGAATTATGAGTT
CAGATCTTTAAAAACGATGTGAGCACGTTGGACCATCCCTTTAGCAGCAC
AGAACATACAAGATGTGCAATAAATCAATTAACTGAAGGGACTACCCTTA
AGATTTATAAATTGATAAATGAATAACATCTCCTATCTCCTAGTCTGTTA
CCATGGTAATGGCGAGAACTACCGAAACGGTAGGAAAATCTACTTTCTGT
ATTGGCCTAAAACTACATAGTGGGCCTATGAATATTATAAATTATATTAT
AAATCAAAAATTATAAATTATCAATAGATAAATGAATAACAACTCCTATC
TCCTAGTTTGTTACCATGGTAACGGCGAGAACTACCGCGGCGTGGAGAGC
CAGGCGGCGACCGGCCAGCCGTGCTACCGGTGGGAGGAG

Coding sequence (CDS) from alignment at Sc0000051:403628..407816+

>transcript:BL96244_cuf1 ID=transcript:BL96244_cuf1|Name=transcript:BL96244_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=819bp|location=Sequence derived from alignment at Sc0000051:403628..407816+ (Branchiostoma lanceolatum)
TTCCAGCGCGTCAAACTGGAGTTCTCCAACTTTGCTTTACCAGCCGAGGA
CGAGGGTTTCTGTACGGCGGATCGGGTACAGGTCATCGAAGGAAACTGGC
CTGACGGACAATACTCTGTCAAAGGCACATTCTGTGGTAGCGGCCCCACC
GGCCCGATATACTCCAACAGCTCCGCGCTTACCGTGGTGGTGCACGGAAT
CCACCTCGCCTCTACGTCACAAGTGACGTCACTGACAGATAAAACGGCCG
TAATATTTGCAGAATATACAGATGCTCCAAGAGCACAATGCACGGAAGCT
GAGTACTGGTGCCGTGACGGGAAGAAGTGCGTCCCGCTGAGCCTGATGTG
TCAGGGCGCCGCGCAGTGCTGGGACGGGAGCGACCAGGATGTCTGCGAGT
GCCTTTCCATCCCTGACGGGGCTCTACGCGACATGTGTCCCACACAGATG
TACACGGCCTTCCCGAACTTCCTTCGTCACCTGTCAGTCCCAGACGTGAC
CAACTGGGACGGGTTTCTCGGAATAAAGCAGCTGTCCAGCAAAACCTGTC
ACCAACAGATCCGAGACTTCGTGTGTTACCTGGTGGTTCCTCCGTGTTCC
TCCGTGACGCGGGACCCCCCATGCCGGTCCTGGTGCGAGGAGCTGAAGCA
CGGCTGCGGGACGGAGACCGGCTGGGACCAGGTACCGGACTGCAGCGCCT
TCGCCAACACTGACTGCTGGAGCGGCACCCCTGAAGTTTGTTACCATGGT
AACGGCGAGAACTACCGCGGCGTGGAGAGCCAGGCGGCGACCGGCCAGCC
GTGCTACCGGTGGGAGGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96244gene:BL96244Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96244_cuf1transcript:BL96244_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96244_cuf1-E1BL96244_cuf1-E1-1564476830-227503Branchiostoma lanceolatumexon
BL96244_cuf1-E2BL96244_cuf1-E2-1564476830-227505Branchiostoma lanceolatumexon
BL96244_cuf1-E3BL96244_cuf1-E3-1564476830-227507Branchiostoma lanceolatumexon
BL96244_cuf1-E4BL96244_cuf1-E4-1564476830-227509Branchiostoma lanceolatumexon
BL96244_cuf1-E5BL96244_cuf1-E5-1564476830-227511Branchiostoma lanceolatumexon
BL96244_cuf1-E6BL96244_cuf1-E6-1564476830-227513Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000051genomeSc0000051:403628..407816 +
Properties
Property NameValue
Transcript idBL96244_cuf1
Biotypeprotein_coding