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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96244_cuf1 >transcript:BL96244_cuf1-protein ID=transcript:BL96244_cuf1-protein|Name=transcript:BL96244_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=273bp
FQRVKLEFSNFALPAEDEGFCTADRVQVIEGNWPDGQYSVKGTFCGSGPT
GPIYSNSSALTVVVHGIHLASTSQVTSLTDKTAVIFAEYTDAPRAQCTEA
EYWCRDGKKCVPLSLMCQGAAQCWDGSDQDVCECLSIPDGALRDMCPTQM
YTAFPNFLRHLSVPDVTNWDGFLGIKQLSSKTCHQQIRDFVCYLVVPPCS
SVTRDPPCRSWCEELKHGCGTETGWDQVPDCSAFANTDCWSGTPEVCYHG
NGENYRGVESQAATGQPCYRWEE Run BLAST on NCBI mRNA from alignment at Sc0000051:403628..407816+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96244_cuf1 ID=transcript:BL96244_cuf1|Name=transcript:BL96244_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4189bp|location=Sequence derived from alignment at Sc0000051:403628..407816+ (Branchiostoma lanceolatum)
TTTCCAGCGCGTCAAACTGGAGTTCTCCAACTTTGCTTTACCAGCCGAGG
ACGAGGGTTTCTGTACGGCGGATCGGGTACAGGTCATCGAAGGAAACTGG
CCTGACGGACAATACTCTGTCAAAGGTGACGTTCCACTACTTTGGTTTAC
AAAATTACCATCGAAATTGTCTGTCAAAACCATTCTTGTTTCTCATCATT
ATTTTTATTGATATGAACAATGTCTGGTTGGTGTGAATAAATCGGTTGGT
TACCGAATATTACCTTGGTTACCTTGCGAATTTTGTATACACCTTTTGGG
CCACAAAGTTATTCCAATCAGCATCATCTCATTTATCGATGAAGGTTAGA
CATCCAGGTAGTAAGATACGCAATAGAACAGTCCCTCAAGCAACTGGATA
CATTTAAAAAAAAGAGTAACCCCCTTAACATTAATCCGTCGGGTTACATA
AATCCGGGTTCGAATCCCATGACGCCACCGATGTTGTGCCCTTGGAAAAG
GCACTTTACACGACTTTCCTCACTCCACCCAGGTGTAGAAATGGGTATAT
TGTTCTCTGTACGTGGCACTGTTGAAATAAGTTATGAAAAATCTGAGTGC
NGGTGATATTACACTACTTTGGTTTACAAAATTACCATCGAAATTGTCTG
TCAAAACCATTCTTGTTTCTCATTATTATTTTTATTGATATGAACAATGT
CTGGTTGGTGTGAGTAAATCGGTTGGTTACCGAATATTACCTTGGTCACC
TTGCGAATTTTGTATACACCTTTTGGGCCATAAAATTATTCCAATCAGCA
TCATCTCATTTATCGATGAAGGTTAGACATCCAGGTAGTAAGATACGCAA
GAGAACAGTCCCTCAAGCAACTGGATACATTTAAAAAAAAGAGTAACCCC
CTTAACATTAATCCGTCGGGTTACATAAATCCGGGTTCGAATCCCATGAC
GCCACCGATGTTGTGCCCTTGGAAAAGGCACTTTACACGACTTTCCTCAC
TCCACCCAGGTGTAGAAATGGGTATATTGTTCTCTGTACGTGGCACTGTT
GAAATAAGTTATGAAAAATCTGAGTGCAGTGCCACGTCGTCCTTGTCTGT
CCAAAAACGACGTAAAACAACAAGTCATTCTCTTCATCACGCTGTTGCAC
GCTTTTTGCTCCAGGCACATTCTGTGGTAGCGGCCCCACCGGCCCGATAT
ACTCCAACAGCTCCGCGCTTACCGTGGTGGTGCACGGAATCCACCTCGCC
TCTACGTCACAAGTGACGTCACTGACAGATAAAACGGCCGTAATATTTGC
AGAATATACAGATGCTCCAAGAGGTAAGGTTTGTCAGTAATTTACGTACT
AGACTCCTCAATGATTCAATGATGATACAATGAAAAAATAATCATGAAAT
CATACCATGACTATAATCACCATTTTACATCCGTTATGCGCACATAAAGA
CCCTGTCTCACTGAACCCGCGGCACGTTGGTGGCCTCGCTGCGCCCTAAA
AAGGATTTGTTTTTCCTTTGACATCATGCAAAACGTACAAGTATGACTAA
AAAGACAACACACACACACACACGCACACACACACACAAAGCGTAAAAAG
ATCCGTTTTTCATCGATGAAATTCGTTGAGAGATGCGTCATCTTTTTTTG
TGTTTTGTTGTATTTCATATCAATCTTATCGTTTCCGCAAGCTGCCCGGC
CGGGCCCCAGGTTGATAATTGTGACCTTAGCATTAGATAGACATATACAT
GTATTGATATATTGATATACATATACATTTATTGATACATTGATATTAAC
TTGTATGTTGTTATCAGCACAATGCACGGAAGCTGAGTACTGGTGCCGTG
ACGGGAAGAAGTGCGTCCCGCTGAGCCTGATGTGTCAGGGCGCCGCGCAG
TGCTGGGACGGGAGCGACCAGGATGTCTGCGGTGAGTCGTAACAGATTTA
TCGTATTGCCAAAAGTTTCCCTTGTACCATCTACTGAGATTTTTCATATA
CAGTCATGTTACATGTACAGTCAAACCTGTACAAGTGGCCATAGTACTAG
TGCTTAAGGACCAACTGGTTAATGTGACCACTTTTGTGTGGTTCCTTAGA
TCCCATTGACACATGCATTAAGAATCCTGTCTATAGTTACCACCTGTCCA
CATAGACCAGTATCGGGTACCTGAGTGGTGTTCTTGTGCAGTTTTGCTTG
TAAAGAGTAAGGTCAGGCTCTTAGAAGAACGTGTCCATTGTGATGACGGC
CCCGGTTCAAAATTGACTTTTAAAAGTATAGATCTAGTTGCTTTACCGTC
AAACGTCAAATCGGAATGTTTCTATCCTAGAGTGGTCTTTATTTTGTATT
CGTTTTCCTACTCAAATGTGTAAATGTGGATTTAAACTTGATGAAAAATC
ATCTGTTTGTTTATTCATTAGTTTATTTGTTGTTGTTTTTAATGCAGAGT
GCCTTTCCATCCCTGACGGGGCTCTACGCGACATGTGTCCCACACAGATG
TACACGGCCTTCCCGAACTTCCTTCGTCACCTGTCAGTCCCAGACGTGAC
CAACTGGGACGGGTTTCTCGGAATAAAGCAGCTGTCCAGCAAAACCTGTC
ACCAACAGGTATGTTCTGTTAGTCATAGACAAACAGGAAATATTGCACAA
CACATATGCTCTACAGATTTTGTGACAATTATGAGAGTCAATGATGAAAT
ACATAGCAGGAATTTGTTTTTATCCTCATGGCACCGTAACACCTTGTAAA
CACTCGCTTAAGCTGACGGAAAACGTTCCTCTGACGCTTTTTTTTCTTAT
TCAATAGATCCGAGACTTTGTGTGCTACCTGGCCTTCTATCGCTTTATAG
TTTTATTCTTAAGGTCCATTCCACCAGGACGGTGCTCTCGCCACGCGCTG
TCTGCGACTTGAATTTTAACAGAGTCTTCAACGAAATTCATAGATTGAAA
ATCGCAGCCCCCAATTCCACATGACTAATCTAATTGACTTATCCTTGATT
TCATAGTTGCAATATCATGCAACATGTACGTATGGCTGAAAAGACAATGA
TTTAAAAAAATTGTGTTTTTCTACTATGAAGTTCGTTTAGTACTCAGGTC
GCAGAGAGCGTTATAGATCGTGCAACGAATTTCATCGATAAAAAATCTGA
TACCTGGTCGTCTGACGCTAGCTTTCTTTTCTCATCCCTCAGATCCGAGA
CTTTGTGTGTTACCTGGTCTTCTAACGCTTAGTTTCGGTATCCCTTAGAT
CCGAGACTTTGTGTGTTACCTGGTCTTCTAACGCTTAGTTTCGGTATCCC
TTAGATCCGAGACTTTGTGTGTTACCTGGTTTTCTCAGTTTAACACCTTA
TCTTCGTATCTCCCTTAGGTCAGAGACTTTGTGTGTTCTAACGCTTAATT
TTCTTCTTCCATTAGAATCTTTTTACACTTTGTGTGTTTTGCTTTCTTTT
CGGTCATACTTGGTCAAAGTCAAGGGTAACACAAATCCAAAGCCGCTGCA
AGGTCGCCAATGTGCCGCAGTCCAGTGACATAGCCACTTCAAGTAAAGCT
TATTTCTTTATCTCTCAGATCCGAGACTTCGTGTGTTACCTGGTGGTTCC
TCCGTGTTCCTCCGTGACGCGGGACCCCCCATGCCGGTCCTGGTGCGAGG
AGCTGAAGCACGGCTGCGGGACGGAGACCGGCTGGGACCAGGTACCGGAC
TGCAGCGCCTTCGCCAACACTGACTGCTGGAGCGGCACCCCTGAAGGTTT
GGGGGAACATTTTGTTTCTTCCATAGTAACAACATGGTGAATTATGAGTT
CAGATCTTTAAAAACGATGTGAGCACGTTGGACCATCCCTTTAGCAGCAC
AGAACATACAAGATGTGCAATAAATCAATTAACTGAAGGGACTACCCTTA
AGATTTATAAATTGATAAATGAATAACATCTCCTATCTCCTAGTCTGTTA
CCATGGTAATGGCGAGAACTACCGAAACGGTAGGAAAATCTACTTTCTGT
ATTGGCCTAAAACTACATAGTGGGCCTATGAATATTATAAATTATATTAT
AAATCAAAAATTATAAATTATCAATAGATAAATGAATAACAACTCCTATC
TCCTAGTTTGTTACCATGGTAACGGCGAGAACTACCGCGGCGTGGAGAGC
CAGGCGGCGACCGGCCAGCCGTGCTACCGGTGGGAGGAG Coding sequence (CDS) from alignment at Sc0000051:403628..407816+ >transcript:BL96244_cuf1 ID=transcript:BL96244_cuf1|Name=transcript:BL96244_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=4914bp|location=Sequence derived from alignment at Sc0000051:403628..407816+ (Branchiostoma lanceolatum)
TTCCAGCGCGTCAAACTGGAGTTCTCCAACTTTGCTTTACCAGCCGAGGA
CGAGGGTTTCTGTACGGCGGATCGGGTACAGGTCATCGAAGGAAACTGGC
CTGACGGACAATACTCTGTCAAAGGCACATTCTGTGGTAGCGGCCCCACC
GGCCCGATATACTCCAACAGCTCCGCGCTTACCGTGGTGGTGCACGGAAT
CCACCTCGCCTCTACGTCACAAGTGACGTCACTGACAGATAAAACGGCCG
TAATATTTGCAGAATATACAGATGCTCCAAGAGCACAATGCACGGAAGCT
GAGTACTGGTGCCGTGACGGGAAGAAGTGCGTCCCGCTGAGCCTGATGTG
TCAGGGCGCCGCGCAGTGCTGGGACGGGAGCGACCAGGATGTCTGCGAGT
GCCTTTCCATCCCTGACGGGGCTCTACGCGACATGTGTCCCACACAGATG
TACACGGCCTTCCCGAACTTCCTTCGTCACCTGTCAGTCCCAGACGTGAC
CAACTGGGACGGGTTTCTCGGAATAAAGCAGCTGTCCAGCAAAACCTGTC
ACCAACAGATCCGAGACTTCGTGTGTTACCTGGTGGTTCCTCCGTGTTCC
TCCGTGACGCGGGACCCCCCATGCCGGTCCTGGTGCGAGGAGCTGAAGCA
CGGCTGCGGGACGGAGACCGGCTGGGACCAGGTACCGGACTGCAGCGCCT
TCGCCAACACTGACTGCTGGAGCGGCACCCCTGAAGTTTGTTACCATGGT
AACGGCGAGAACTACCGCGGCGTGGAGAGCCAGGCGGCGACCGGCCAGCC
GTGCTACCGGTGGGAGGAGTTCCAGCGCGTCAAACTGGAGTTCTCCAACT
TTGCTTTACCAGCCGAGGACGAGGGTTTCTGTACGGCGGATCGGGTACAG
GTCATCGAAGGAAACTGGCCTGACGGACAATACTCTGTCAAAGGCACATT
CTGTGGTAGCGGCCCCACCGGCCCGATATACTCCAACAGCTCCGCGCTTA
CCGTGGTGGTGCACGGAATCCACCTCGCCTCTACGTCACAAGTGACGTCA
CTGACAGATAAAACGGCCGTAATATTTGCAGAATATACAGATGCTCCAAG
AGCACAATGCACGGAAGCTGAGTACTGGTGCCGTGACGGGAAGAAGTGCG
TCCCGCTGAGCCTGATGTGTCAGGGCGCCGCGCAGTGCTGGGACGGGAGC
GACCAGGATGTCTGCGAGTGCCTTTCCATCCCTGACGGGGCTCTACGCGA
CATGTGTCCCACACAGATGTACACGGCCTTCCCGAACTTCCTTCGTCACC
TGTCAGTCCCAGACGTGACCAACTGGGACGGGTTTCTCGGAATAAAGCAG
CTGTCCAGCAAAACCTGTCACCAACAGATCCGAGACTTCGTGTGTTACCT
GGTGGTTCCTCCGTGTTCCTCCGTGACGCGGGACCCCCCATGCCGGTCCT
GGTGCGAGGAGCTGAAGCACGGCTGCGGGACGGAGACCGGCTGGGACCAG
GTACCGGACTGCAGCGCCTTCGCCAACACTGACTGCTGGAGCGGCACCCC
TGAAGTTTGTTACCATGGTAACGGCGAGAACTACCGCGGCGTGGAGAGCC
AGGCGGCGACCGGCCAGCCGTGCTACCGGTGGGAGGAGTTCCAGCGCGTC
AAACTGGAGTTCTCCAACTTTGCTTTACCAGCCGAGGACGAGGGTTTCTG
TACGGCGGATCGGGTACAGGTCATCGAAGGAAACTGGCCTGACGGACAAT
ACTCTGTCAAAGGCACATTCTGTGGTAGCGGCCCCACCGGCCCGATATAC
TCCAACAGCTCCGCGCTTACCGTGGTGGTGCACGGAATCCACCTCGCCTC
TACGTCACAAGTGACGTCACTGACAGATAAAACGGCCGTAATATTTGCAG
AATATACAGATGCTCCAAGAGCACAATGCACGGAAGCTGAGTACTGGTGC
CGTGACGGGAAGAAGTGCGTCCCGCTGAGCCTGATGTGTCAGGGCGCCGC
GCAGTGCTGGGACGGGAGCGACCAGGATGTCTGCGAGTGCCTTTCCATCC
CTGACGGGGCTCTACGCGACATGTGTCCCACACAGATGTACACGGCCTTC
CCGAACTTCCTTCGTCACCTGTCAGTCCCAGACGTGACCAACTGGGACGG
GTTTCTCGGAATAAAGCAGCTGTCCAGCAAAACCTGTCACCAACAGATCC
GAGACTTCGTGTGTTACCTGGTGGTTCCTCCGTGTTCCTCCGTGACGCGG
GACCCCCCATGCCGGTCCTGGTGCGAGGAGCTGAAGCACGGCTGCGGGAC
GGAGACCGGCTGGGACCAGGTACCGGACTGCAGCGCCTTCGCCAACACTG
ACTGCTGGAGCGGCACCCCTGAAGTTTGTTACCATGGTAACGGCGAGAAC
TACCGCGGCGTGGAGAGCCAGGCGGCGACCGGCCAGCCGTGCTACCGGTG
GGAGGAGTTCCAGCGCGTCAAACTGGAGTTCTCCAACTTTGCTTTACCAG
CCGAGGACGAGGGTTTCTGTACGGCGGATCGGGTACAGGTCATCGAAGGA
AACTGGCCTGACGGACAATACTCTGTCAAAGGCACATTCTGTGGTAGCGG
CCCCACCGGCCCGATATACTCCAACAGCTCCGCGCTTACCGTGGTGGTGC
ACGGAATCCACCTCGCCTCTACGTCACAAGTGACGTCACTGACAGATAAA
ACGGCCGTAATATTTGCAGAATATACAGATGCTCCAAGAGCACAATGCAC
GGAAGCTGAGTACTGGTGCCGTGACGGGAAGAAGTGCGTCCCGCTGAGCC
TGATGTGTCAGGGCGCCGCGCAGTGCTGGGACGGGAGCGACCAGGATGTC
TGCGAGTGCCTTTCCATCCCTGACGGGGCTCTACGCGACATGTGTCCCAC
ACAGATGTACACGGCCTTCCCGAACTTCCTTCGTCACCTGTCAGTCCCAG
ACGTGACCAACTGGGACGGGTTTCTCGGAATAAAGCAGCTGTCCAGCAAA
ACCTGTCACCAACAGATCCGAGACTTCGTGTGTTACCTGGTGGTTCCTCC
GTGTTCCTCCGTGACGCGGGACCCCCCATGCCGGTCCTGGTGCGAGGAGC
TGAAGCACGGCTGCGGGACGGAGACCGGCTGGGACCAGGTACCGGACTGC
AGCGCCTTCGCCAACACTGACTGCTGGAGCGGCACCCCTGAAGTTTGTTA
CCATGGTAACGGCGAGAACTACCGCGGCGTGGAGAGCCAGGCGGCGACCG
GCCAGCCGTGCTACCGGTGGGAGGAGTTCCAGCGCGTCAAACTGGAGTTC
TCCAACTTTGCTTTACCAGCCGAGGACGAGGGTTTCTGTACGGCGGATCG
GGTACAGGTCATCGAAGGAAACTGGCCTGACGGACAATACTCTGTCAAAG
GCACATTCTGTGGTAGCGGCCCCACCGGCCCGATATACTCCAACAGCTCC
GCGCTTACCGTGGTGGTGCACGGAATCCACCTCGCCTCTACGTCACAAGT
GACGTCACTGACAGATAAAACGGCCGTAATATTTGCAGAATATACAGATG
CTCCAAGAGCACAATGCACGGAAGCTGAGTACTGGTGCCGTGACGGGAAG
AAGTGCGTCCCGCTGAGCCTGATGTGTCAGGGCGCCGCGCAGTGCTGGGA
CGGGAGCGACCAGGATGTCTGCGAGTGCCTTTCCATCCCTGACGGGGCTC
TACGCGACATGTGTCCCACACAGATGTACACGGCCTTCCCGAACTTCCTT
CGTCACCTGTCAGTCCCAGACGTGACCAACTGGGACGGGTTTCTCGGAAT
AAAGCAGCTGTCCAGCAAAACCTGTCACCAACAGATCCGAGACTTCGTGT
GTTACCTGGTGGTTCCTCCGTGTTCCTCCGTGACGCGGGACCCCCCATGC
CGGTCCTGGTGCGAGGAGCTGAAGCACGGCTGCGGGACGGAGACCGGCTG
GGACCAGGTACCGGACTGCAGCGCCTTCGCCAACACTGACTGCTGGAGCG
GCACCCCTGAAGTTTGTTACCATGGTAACGGCGAGAACTACCGCGGCGTG
GAGAGCCAGGCGGCGACCGGCCAGCCGTGCTACCGGTGGGAGGAGTTCCA
GCGCGTCAAACTGGAGTTCTCCAACTTTGCTTTACCAGCCGAGGACGAGG
GTTTCTGTACGGCGGATCGGGTACAGGTCATCGAAGGAAACTGGCCTGAC
GGACAATACTCTGTCAAAGGCACATTCTGTGGTAGCGGCCCCACCGGCCC
GATATACTCCAACAGCTCCGCGCTTACCGTGGTGGTGCACGGAATCCACC
TCGCCTCTACGTCACAAGTGACGTCACTGACAGATAAAACGGCCGTAATA
TTTGCAGAATATACAGATGCTCCAAGAGCACAATGCACGGAAGCTGAGTA
CTGGTGCCGTGACGGGAAGAAGTGCGTCCCGCTGAGCCTGATGTGTCAGG
GCGCCGCGCAGTGCTGGGACGGGAGCGACCAGGATGTCTGCGAGTGCCTT
TCCATCCCTGACGGGGCTCTACGCGACATGTGTCCCACACAGATGTACAC
GGCCTTCCCGAACTTCCTTCGTCACCTGTCAGTCCCAGACGTGACCAACT
GGGACGGGTTTCTCGGAATAAAGCAGCTGTCCAGCAAAACCTGTCACCAA
CAGATCCGAGACTTCGTGTGTTACCTGGTGGTTCCTCCGTGTTCCTCCGT
GACGCGGGACCCCCCATGCCGGTCCTGGTGCGAGGAGCTGAAGCACGGCT
GCGGGACGGAGACCGGCTGGGACCAGGTACCGGACTGCAGCGCCTTCGCC
AACACTGACTGCTGGAGCGGCACCCCTGAAGTTTGTTACCATGGTAACGG
CGAGAACTACCGCGGCGTGGAGAGCCAGGCGGCGACCGGCCAGCCGTGCT
ACCGGTGGGAGGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000051 | genome | Sc0000051:403628..407816 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96244_cuf1 |
| Biotype | protein_coding |
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