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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96256_cuf1 >transcript:BL96256_cuf1-protein ID=transcript:BL96256_cuf1-protein|Name=transcript:BL96256_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=209bp
TASSNTGPSADHTSGNGYYMYLEASAPRQQGDKAWLVSEAFQTGPPARCL
RFWYHMFGNGIGTLKVWMQKSSTQLDEMWSLSGDQGDQWQQAFITLRSDQ
TYTLILEGTVGTSHTGDISLDDVEVTNGECTVCDTKTTDDQFRYRWDLPP
VTGSRFEFEVQASSDVHVALSAQNQNLNDMYEVVIGGWGNTQSVIRTPTA
EHQVTAQTQ Run BLAST on NCBI mRNA from alignment at Sc0000256:125403..129470+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96256_cuf1 ID=transcript:BL96256_cuf1|Name=transcript:BL96256_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4068bp|location=Sequence derived from alignment at Sc0000256:125403..129470+ (Branchiostoma lanceolatum)
CACAGCCTCCTCCAACACTGGACCATCGGCTGATCACACCAGTGGGAATG
GTAAGTAATGTTACTCTTGGTATCCAGCATCAGACAAACATTAAAAAAAG
TACTACTGCTAGCACATTTTGTTAAGTCATCTATATCCTTAGTAGCTTAA
AATCTCTGTAATAGTCTAGAAATTCAGCCCTTAGTGATCATGAAGATCAA
CTAAGCTCAGCCTTTAGAATGAATGCTAAATCTAAGTCCCATCAGTTTTT
TCCCTAGCCAAATGCTGAACACCATCATGTCAAGATCCTCTAGATCTACT
ATTTAATGTTATAGAATAAACTAGACAAAGCCATCTTCCTGTCTTGATCT
AGACAGCTCTACAACTGGATCAAGAGACACAACAACTTATACCATATAGA
TACTATGCAATATTCCCTGCCTGAGTAATGAGTGTCAAGCAATCTTTGTA
TGAAATTCAATGTAGTAAGGAAATAAGTTGAAAAAAAGCTGTTGATTTCT
TTCAGGATATTACATGTACCTTGAGGCCTCTGCACCAAGACAACAAGGTG
ACAAGGCCTGGCTCGTCTCTGAAGCCTTCCAAACCGGCCCCCCTGCCAGA
TGTCTGCGCTTCTGGTACCACATGTTTGGGAACGGCATCGGAACTCTGAA
GGTTATTGTCTTTTATGTATAGTTTTGGTGCCTTATGCTTACATGTAGGT
CCCAATTGCGCCAGTGCCTGTAGGGGGTATAGTCCTGGCCAGACTCCGTA
GCCACACATTTGTGTCCCAGTGGACTCCGTAGCCACACATTTGTGTCCCG
GTGGACTCCGTAGCCACACATTTGTGTCCCGGTGGACTCCGTAGCCACAC
ATTTGTGTCCCGGTGGACTCCGTAGCCACACATTTGTGTCCCGGTGGACT
CCGTAGCCACACATTTGTGTCCCGGTGGACTCCGTAGCCACACATTTGTG
TCCCGGTGGACTCCGTAGCCACACATTTGTGTCCCGGTGGACTCCGTAGC
CACACATTTGTGTCCCGGTGGACTCCGTAGCCACACATTTGTGTCCCGGT
GGACTCCGTAGCCACACATTTGTGTCCCGGTGGACTCCGTAGCCACACAT
TTGTGTCCCGGTGGACTCCGTAGCCACACATTTGTGTCCCGGTGGACTCC
GTAGCCACACATTTGTGTCCCGGTGGACTCCGTAGCCACACATTTGTGTC
CCGGTGGTCTATTTGTTACCGGGTCCCGCGTTGACTTTAAATCCGAGTTA
AAATGATTCAGGGTCCCGGCCGGGCTCAAAAATAGCCCAGCAGCCGCATG
GTGTCCCACAGGGCCACGTAGGAGTTACATCCATGCATAAGTGAAAAAAA
AGCCTGTCAACTACCCAGCGGGCCCCTTTTTCCAATTGGTACCTAAGTAT
TAGCTGTGAATGCTACCCAAATTCCATTCTATTGATACAGGTATCATTTT
ATGTATTTATGTGACTGTATTACGTCTAAGGTAGAAACAACTAACAATAA
ACTTCCCAAAACTCTTTTTCCCACAGGTCTGGATGCAGAAATCATCGACC
CAGCTGGACGAGATGTGGTCGCTAAGCGGTGACCAGGGTGACCAGTGGCA
GCAGGCCTTTATCACACTCAGGAGTGACCAGACCTACACGGTACGTTCAG
AAAATTCATGGCTATTCTGACTTGTACTTCTACAATGTCATGCAAAAACA
ATATAGAATGATATTCTATATAGAATATAACTTAGGTCTCTTCTTAGCAC
AACCTCAGGCTGTCCTGTTTGGTTTGACTAATATAAATTATGTTTGAAGC
AAGCAAAGAAACAAAATTCATGGAGGCACAAGCTTTTAAGTTTGTGGTTT
GAATAAATGGATGAATCCTTTTTTTGGCATATATCAACGATCTCCCTAAC
CATGCTGCACATGCCAAGGTTCGTCTATTTGCGGACGACTGCATACTGCA
GATGGTAGTACGGGAGCCACAAGACTGTGTCAACCTACAACATGACATAG
ACAACATTTGTAGTTGGGAGAAGACATGGCTTATGCAATTTAATCCATCT
AAGTGTGAGGTCATGTCCATTCCGGCGTCAAAAACACCCATCTGTTATGA
CTATACCCTCCATGATACAATAATGAACAAGGTAAGTAAAGCTAAGTATT
TAGGGTTAACAATTTCCGCCAACCTTTCCTGGAACTGCCATGTTGACAAC
GTTGCAGCCAAGGCCAATCGAACCTTAGGAATGCTTCGTAGGAGCCTGCG
GATTGCCAGCGTGGAGGGGAAGGGACGTGCTTACATGGCATTAGTCAGGC
CGTCTCTGGAGTACGCCTCCACGGTATGGGACCCTCACACTGCCGATCAG
GTGAGTAGGGTGGAGGCTGTGCAGCGCAGAGCTGCCAGGTATGTATGCAA
CAACTACAAACGCACGGCCTCTGTAACAGCTATGATTACTGATCTGGAAT
GGCAGCCACTTTCCTATCGCCGCAAAACAGCGAGGCTGACCACCATGTTT
AAAATCCTTCACAACACCATCTCTGTCCCCCACACCTCTAGTCTCGTCCC
AGCAGCTCGATGCTCCCGCCGCACTAATCATGCTTTCAAGCTGCAGACCA
TCGCGTGTAAGACCAACTACTACAGGCTCTCGTTCTTCCCTCGTACTATC
AAGGAGTGGAATGAACTTGAGCCTAGTGTGGCGGAGGCGGAGTCCCTCTC
CCAGTTCAAAGCCGAGCTGGGACGGGCTTCGCTGCATTGAGCTGCCCCCC
GTCCTTGTATATATGCAAATATATAATTACTAACAACACTAAAAGTTTCA
CTTGTCCCGTTTTTTTGCACATGTCCTTGTCTACCCCCCTTTCTACCCTC
TGTTTGCACCTGTTACTAACATTTGGCGCAGCTGCTAATAATCCGCCGAA
AGGCGGGCTGAGCAGTACCGAAAAAAAAAAAAAAAAGAAGAAGAAGCTAG
AATAAGTGTGTGTTTTTTTAATTTTTTATCCTTGTGTGGTTCAATACAGG
TACAGACAGCTCTGAAAATGCTTTGTTCTCTGTCCAGCCAAGGAGTTTTT
ATTTTATTTTTAGGCCACACCAATTTAATTTCTTGGTTAACGGATTTTTA
TTTTCCAAAAAAAAAAAATTGAGAAAAAAAAAATCCATTAAAATAGAAGG
CTGGGCCAGCCTTCTGTTTTCATGATTTTTTTTTGTGGAAAATAAAAAAA
TCCGTTAACCAAGAAATTAAGATGGTGTGGCCTTATGAGAAGTTTTGAAT
GAACGTTCTCACATTGATACACTTTCTGTCCCAACAGCTGATCCTAGAGG
GCACTGTTGGCACCAGCCATACTGGAGACATCTCGCTGGATGATGTTGAG
GTGACCAACGGAGAGTGTACAGGTCAGTAGGTTGTAGTATGACTGTATTA
CAATGTAATCACCCAGTATATATACATCACTTAGCACACAAAAGCCTCAA
GAGCACATACTATTAGTAACTTTTTTTATAAAACTTTGGTTCCTGTAAAA
TTACAATTTTAAAAATGTGAGAAGTAATTTACCCAGTAGTTAAACATTAG
GTGGAAATTACATGTAGTACCTAGATCCTTAGCGGCTGTATGGTATTCTA
CAATCTAAATCATACTAATTAGGAACCAAAAGATCTGTGTTCTTTCAGGC
CCTTCTAGTGCCTGGTGCAACGTAGTGCAGCAAGTTCCCTTACTATATTT
TTACAGGGAGGGGCTGCTAGCCCTTCCCGTTTACATGCTCAAGGCACTTC
CTCGATCACCAGACAGCCATTTGCATCCCTTACAACAGACAAAAGTTACT
GGACTAAAATTAGTGTTTTCTGTTGTTTCTACAGTTTGTGACACAAAGAC
TACAGACGACCAGTTCCGGTATCGATGGGACCTTCCACCTGTCACAGGGT
CAAGGTTCGAGTTCGAAGTTCAGGCCAGTAGTGACGTTCACGTGGCGCTG
TCGGCACAGAACCAGAATCTCAACGACATGTACGAGGTCGTGATTGGCGG
TTGGGGTAACACGCAGTCTGTTATCAGGACACCTACCGCAGAACACCAAG
TTACGGCCCAAACACAAG Coding sequence (CDS) from alignment at Sc0000256:125403..129470+ >transcript:BL96256_cuf1 ID=transcript:BL96256_cuf1|Name=transcript:BL96256_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3135bp|location=Sequence derived from alignment at Sc0000256:125403..129470+ (Branchiostoma lanceolatum)
ACAGCCTCCTCCAACACTGGACCATCGGCTGATCACACCAGTGGGAATGG
ATATTACATGTACCTTGAGGCCTCTGCACCAAGACAACAAGGTGACAAGG
CCTGGCTCGTCTCTGAAGCCTTCCAAACCGGCCCCCCTGCCAGATGTCTG
CGCTTCTGGTACCACATGTTTGGGAACGGCATCGGAACTCTGAAGGTCTG
GATGCAGAAATCATCGACCCAGCTGGACGAGATGTGGTCGCTAAGCGGTG
ACCAGGGTGACCAGTGGCAGCAGGCCTTTATCACACTCAGGAGTGACCAG
ACCTACACGCTGATCCTAGAGGGCACTGTTGGCACCAGCCATACTGGAGA
CATCTCGCTGGATGATGTTGAGGTGACCAACGGAGAGTGTACAGTTTGTG
ACACAAAGACTACAGACGACCAGTTCCGGTATCGATGGGACCTTCCACCT
GTCACAGGGTCAAGGTTCGAGTTCGAAGTTCAGGCCAGTAGTGACGTTCA
CGTGGCGCTGTCGGCACAGAACCAGAATCTCAACGACATGTACGAGGTCG
TGATTGGCGGTTGGGGTAACACGCAGTCTGTTATCAGGACACCTACCGCA
GAACACCAAGTTACGGCCCAAACACAAACAGCCTCCTCCAACACTGGACC
ATCGGCTGATCACACCAGTGGGAATGGATATTACATGTACCTTGAGGCCT
CTGCACCAAGACAACAAGGTGACAAGGCCTGGCTCGTCTCTGAAGCCTTC
CAAACCGGCCCCCCTGCCAGATGTCTGCGCTTCTGGTACCACATGTTTGG
GAACGGCATCGGAACTCTGAAGGTCTGGATGCAGAAATCATCGACCCAGC
TGGACGAGATGTGGTCGCTAAGCGGTGACCAGGGTGACCAGTGGCAGCAG
GCCTTTATCACACTCAGGAGTGACCAGACCTACACGCTGATCCTAGAGGG
CACTGTTGGCACCAGCCATACTGGAGACATCTCGCTGGATGATGTTGAGG
TGACCAACGGAGAGTGTACAGTTTGTGACACAAAGACTACAGACGACCAG
TTCCGGTATCGATGGGACCTTCCACCTGTCACAGGGTCAAGGTTCGAGTT
CGAAGTTCAGGCCAGTAGTGACGTTCACGTGGCGCTGTCGGCACAGAACC
AGAATCTCAACGACATGTACGAGGTCGTGATTGGCGGTTGGGGTAACACG
CAGTCTGTTATCAGGACACCTACCGCAGAACACCAAGTTACGGCCCAAAC
ACAAACAGCCTCCTCCAACACTGGACCATCGGCTGATCACACCAGTGGGA
ATGGATATTACATGTACCTTGAGGCCTCTGCACCAAGACAACAAGGTGAC
AAGGCCTGGCTCGTCTCTGAAGCCTTCCAAACCGGCCCCCCTGCCAGATG
TCTGCGCTTCTGGTACCACATGTTTGGGAACGGCATCGGAACTCTGAAGG
TCTGGATGCAGAAATCATCGACCCAGCTGGACGAGATGTGGTCGCTAAGC
GGTGACCAGGGTGACCAGTGGCAGCAGGCCTTTATCACACTCAGGAGTGA
CCAGACCTACACGCTGATCCTAGAGGGCACTGTTGGCACCAGCCATACTG
GAGACATCTCGCTGGATGATGTTGAGGTGACCAACGGAGAGTGTACAGTT
TGTGACACAAAGACTACAGACGACCAGTTCCGGTATCGATGGGACCTTCC
ACCTGTCACAGGGTCAAGGTTCGAGTTCGAAGTTCAGGCCAGTAGTGACG
TTCACGTGGCGCTGTCGGCACAGAACCAGAATCTCAACGACATGTACGAG
GTCGTGATTGGCGGTTGGGGTAACACGCAGTCTGTTATCAGGACACCTAC
CGCAGAACACCAAGTTACGGCCCAAACACAAACAGCCTCCTCCAACACTG
GACCATCGGCTGATCACACCAGTGGGAATGGATATTACATGTACCTTGAG
GCCTCTGCACCAAGACAACAAGGTGACAAGGCCTGGCTCGTCTCTGAAGC
CTTCCAAACCGGCCCCCCTGCCAGATGTCTGCGCTTCTGGTACCACATGT
TTGGGAACGGCATCGGAACTCTGAAGGTCTGGATGCAGAAATCATCGACC
CAGCTGGACGAGATGTGGTCGCTAAGCGGTGACCAGGGTGACCAGTGGCA
GCAGGCCTTTATCACACTCAGGAGTGACCAGACCTACACGCTGATCCTAG
AGGGCACTGTTGGCACCAGCCATACTGGAGACATCTCGCTGGATGATGTT
GAGGTGACCAACGGAGAGTGTACAGTTTGTGACACAAAGACTACAGACGA
CCAGTTCCGGTATCGATGGGACCTTCCACCTGTCACAGGGTCAAGGTTCG
AGTTCGAAGTTCAGGCCAGTAGTGACGTTCACGTGGCGCTGTCGGCACAG
AACCAGAATCTCAACGACATGTACGAGGTCGTGATTGGCGGTTGGGGTAA
CACGCAGTCTGTTATCAGGACACCTACCGCAGAACACCAAGTTACGGCCC
AAACACAAACAGCCTCCTCCAACACTGGACCATCGGCTGATCACACCAGT
GGGAATGGATATTACATGTACCTTGAGGCCTCTGCACCAAGACAACAAGG
TGACAAGGCCTGGCTCGTCTCTGAAGCCTTCCAAACCGGCCCCCCTGCCA
GATGTCTGCGCTTCTGGTACCACATGTTTGGGAACGGCATCGGAACTCTG
AAGGTCTGGATGCAGAAATCATCGACCCAGCTGGACGAGATGTGGTCGCT
AAGCGGTGACCAGGGTGACCAGTGGCAGCAGGCCTTTATCACACTCAGGA
GTGACCAGACCTACACGCTGATCCTAGAGGGCACTGTTGGCACCAGCCAT
ACTGGAGACATCTCGCTGGATGATGTTGAGGTGACCAACGGAGAGTGTAC
AGTTTGTGACACAAAGACTACAGACGACCAGTTCCGGTATCGATGGGACC
TTCCACCTGTCACAGGGTCAAGGTTCGAGTTCGAAGTTCAGGCCAGTAGT
GACGTTCACGTGGCGCTGTCGGCACAGAACCAGAATCTCAACGACATGTA
CGAGGTCGTGATTGGCGGTTGGGGTAACACGCAGTCTGTTATCAGGACAC
CTACCGCAGAACACCAAGTTACGGCCCAAACACAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000256 | genome | Sc0000256:125403..129470 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96256_cuf1 |
| Biotype | protein_coding |
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