transcript:BL96282_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96282_cuf2
Unique Nametranscript:BL96282_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96282_cuf2

>transcript:BL96282_cuf2-protein ID=transcript:BL96282_cuf2-protein|Name=transcript:BL96282_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=302bp
ENTRTRTLKAKDKEFSSSSVNKFVMAEHKHLGALQSLRIWHNNSGKGAEA
SWYLDRVQVRDLDTNKMYYFLCDKWLAVNEDDGEVCRTLPVATEEDMKQF
NTVFFASVKRDFNDGHLWFSVFSRPTRSNFTRVQRVTCCLSLLFCTMVSN
AMWYDTEKKVRTVHALTIGPITLTFHQLYVSFMSSILIFPVNIGLVTLFR
RIREKESATFEVDTGEDTAETVEKGDCKDDQGKQSKKKKKKRFMFPHWMV
YVAWIVAFLVTFTSAFFSVLYSLDWGAKKSIAWLTSMLMSFTMSVFVVDP
IK
Run BLAST on NCBI

mRNA from alignment at Sc0000036:1825453..1829820+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96282_cuf2 ID=transcript:BL96282_cuf2|Name=transcript:BL96282_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4368bp|location=Sequence derived from alignment at Sc0000036:1825453..1829820+ (Branchiostoma lanceolatum)
CGAGAACACCAGGACCAGGACGCTGAAGGCAAAGGACAAGGTACTTTATA
TTTGTGATAAACACAAGAAACTATACGGTAAAGCAGGCTCTGCCCTTGGG
CACCGCCAAAAATTGCCATTTTGCATCTCCGTAGACTTTATGCTACAGAA
GTCTTTCGTGTTCTTCTACATTGATGTGACGTGTTTGTTTTTGCTATTTG
TATACATCAGGAGTTCAGCAGTAGTAGTGTGAATAAGTTTGTCATGGCAG
AGCACAAGCACCTGGGCGCCCTGCAGTCTCTCCGTATCTGGCACAACAAC
AGTGGGAAGGGTGCTGAGGCGAGCTGGTACCTGGACAGGGTGCAAGTCCG
AGACCTTGACACTAACAAGATGTAGGTTAAACATTTGTCTTCAGCCAGTT
ATTCCTGAAGCTAGCTTCACATAATTGCTTCACATTTTTCGAATGGTCAC
ATTGTATAGAGTACTTTATTCTAATGTAAACATACCTGCTGTAGGTTTTG
AAACAAACATAACTTAGTGAAACATTCAAGATATTTCAAAATGTGCAGTC
TTTAGCCTAATGTGTGAGACTCTTAGTAACACTAGTGTAATTTGAAATAA
TGCTAAAATACTTAATAGATAATACCGTAATTTTAAACGTTTAGGTTAAA
CTACATCCGCACAGAATGTTGTCAATGATCATAACGTAGTCCGGGAGACG
ACGTTCTCAACTTGTTTTCTTAGATAAACAAAGCCTCTTCATTCGAAAGA
TAATGTATGGTTAGATATTTGGGTAATGCTATTGTTGTCATTTCAAAACT
TTTATGACATATGTAGGTATTCCTTATATAGCGTCATGCTTCGTCCTCAG
TCTCACTACCCCCCTCTCACTGGACCCGCGGCACGCCGGCGACGTCACTG
CGTCTTAAACTGGATTTGTGTTACCCTTGACTTTATAATGGGAATATCAT
TCGAAACGTACAAGTATGACCAAAAAGACAACGAAACAAAAAAGCTTAAA
AAGATTCGTTTTTTGTCGATGAGTGCTTTGTCAATTTGATCAGCCGCAGC
GACGCCGCCAGCGTGCCGAGGGTCCAGTGAGAGGGGGGCTTTATCTTTAT
TTACGCATTCCTCTCAGGTACTACTTCCTGTGCGACAAGTGGCTCGCTGT
GAATGAGGACGACGGCGAGGTCTGTCGTACACTGCCCGTCGCCACGGAGG
AGGACATGAAACAATTCAACACCGTGTTCTTTGCCTCCGTGAGTTGCACA
CGCCGTAAAATTTGTGTATACAAACCTAGTATTGAACCCTCTTATTTGTA
TCAACTGGAATTTTTTTTTGTCTCTTCATTCTGTCAGATTTACAGCTCAA
GTTGCAGGAGAAGGCCTAGGCTTCAAATTGCAATTAACAAGGACAAAATG
CAACAGCTTCTAATCAGGAGAGGGGGCCCTCAGTAATTATTGTCAGCACC
GCTCCCCAAAAGATTTCTGGGGAGACCTCTGCCGTTATATTGTTTCTTAG
GATTGACAAAGAAGAGAACAGATAATCAAAGAATGTTGCTTTCACTGGCG
AAATTTCTAAATCCATTTTTTCTTAGTGGACATTAGCAAGACCAAGGGTA
GCGTTGGCTGTATTTCTTTATATAGATGAACAAATAAATCAAATCAAATC
AAAGGCAAAGTAAAGGTCGAATATAGCGTACCCTTCAAAAGAAAAGTCGT
ACGGTACATGTACTTTCCGTTGTCGATGTAATAACCCTAACCGAAAAATT
GTAAGTTAAAAAGAGCAAAACAATCCACCCAGGAATAATTTTAGAGTCAT
CGTGTTCACAGACACACACACAGTCAAACATACACACACACATACATACA
TACATACATACATACATACACAGAAAGACTGAACCGAAAACATAATCTTC
AATTCTAAGCGAAGGTATCTAAAGGTGTATTTGTAAGACTCGACCATCAT
CAAACAAGACCAACGTATCTCCTGGGTACACATGTTGTTTGTTAGTTGGT
TGGTTTATTTTAACAAGATCTCTGTTATTTTTTCAATTCTAATAACCCTC
AGAAATATTCTACCTAGAGCCAGCTTACACATGAAATACAATAGATACAA
TTAAACATTGAAGCTTCTACTTTTCTTTGCAGGTTAAGAGAGACTTCAAT
GATGGTCACCTGTGGTTTTCTGTGTTCTCACGTCCGACCAGAAGTAACTT
CACCCGAGTTCAGCGCGTCACGTGCTGCTTGTCTCTGCTCTTCTGCACCA
TGGTGTCCAACGCCATGTGGTATGTGAATCAATTGATCTTCCAACATTTA
TTAATTTATTTTTTGAGTGAGTGAGATTTACCACATTTGTGGAAGGATTG
ACATAAAAGGTGAACTATCACCTTTTCAAGATGTCAACCCAGACCGGACT
GTAAGGTTTGGACCATCGCACACCGGGTCATGCCCCCACTCTTTTTCGAA
GGTGTGGTGGGTTCTTTAACGTGCGCGGGGTATGGCTCTCCCCAAACACG
AGACCTCCGTTTAACGTCCTATCCAAGGGGCGTCCCTAACCGAAGCTAGG
TACTCATTTACACCTGAATGAAGTGAGGACATTTGTGTTAAGTGCCTTTC
CCAAGGGCACAATGTCCGGGCGCATGTCAAGACATGTCTAAGGGCAAGCC
GGGATCGAACTCGGGTTTCCTTGTTTGACAGCCGAATGTTCTAGCCGTTT
CGCCACACGCGTACGCCACAATTCTGTTACGGTTTAATAGATAGGCCTCT
ATTTGTGATATAATTGTATGCTGGGAGACGTGGAGCACCATGGATACATG
TACCTCAAGGGTAAAGTAAAATCCTGACCACAAACACCAACCGGACACAC
GTGCGCAATCGTGTTGTCATGGTAATGATGTTGATTGCCCCCTGAGCTAC
CCATAGTTCCCCGCGTCTCCCAGCATGCAATGGAATCCAGGGAAAGGTCT
GAAGTATGGGAATATGTTATGGTCTCGAATGCCTAGCGTAAACCACACCT
AGTCTTGTTTATCATCAGTCAGCTTCTGAGCAATTTTTAAATACATTTTC
TGTCAATTTTTTCGACAAACAAGGACGACGTAGCACAGCACACAAGTTTT
TTTCATAACTCGTGTTAACAGTGCCACGTACAGAGAAGGATATACCTATT
TGTAAACCTGGGTGGAGTGAGAAAGTCGTGTTAAGAGCAAACGTTACATG
GTGGAACCATATATATTATGCCTACACTGTTCTCAATGGTTTATGTTAAT
CCTGACACACTGACATTATTAACGATAGGCTATAATCATTTATGCAGGTA
TGATACAGAGAAGAAGGTACGGACTGTCCATGCCCTCACCATCGGCCCGA
TCACCCTCACTTTTCACCAGTTGTATGTCAGCTTCATGAGCAGTATACTC
ATCTTTCCCGTCAACATTGGGCTCGTCACACTGTTCAGGTAAACTTTGAA
ACTTTATTCAAGTACAACTTCGCAGACGCTATGTCTGAATTATGTTGACT
TTTTACAGAGGTTTGTAACACATTTTAAATTGATACTGACAAATCATTCT
TAAAATCGTCAAATTGAAATTGTAACGGCAGATTAAAACTCAGTTAACAT
TCGAATATACAGGATAAACAACAGTTAACAATGCCATATAATATAATATA
ATCCTATACTAGTGTTCCGTAGCGACAATGTAAATCGTCTTATAAGTACG
GTACTTTACTCGGAACACGACAGTACTAACGTCCTGGAGGAATTTAGTAA
TGTATAGCTTACTATATTCTTACTAATTGTAAGCATCCTTTTAAGTTGAA
GCCAAAATTGTAAAATGCAATGGCTAACACAGAAATCACTAGCAAACGAC
AGGAATTTTGTGATGAAATGAATTTTACAATTAGCGAATTGTTTTCATTT
ACAGTTTTAACATTTTACAGCGTTTAAACTCGTCACTGTACCACGAAATA
CTTTTTTTGCTCATTTCTTGTAAACATATAGGAAGGTTCAATATGAAATT
GTTAACAGAAACAGGTACATTCTATAATGCTTTGTTTAAATTTTATGTAA
TCTCAATAGGAGGATACGAGAAAAAGAATCAGCTACATTTGAGGTTGATA
CTGGCGAGGATACAGCCGAGACTGTAGAAAAAGGTGATTGTAAAGACGAT
CAAGGCAAGCAGAGCAAGAAAAAGAAGAAGAAACGTTTCATGTTTCCTCA
CTGGATGGTGTACGTGGCGTGGATTGTTGCCTTCCTGGTGACCTTTACGT
CCGCGTTCTTCAGCGTGTTGTACAGTCTGGACTGGGGCGCGAAGAAGTCC
ATCGCCTGGCTGACATCCATGCTGATGTCCTTCACCATGTCTGTGTTTGT
CGTGGATCCAATCAAGGT

Coding sequence (CDS) from alignment at Sc0000036:1825453..1829820+

>transcript:BL96282_cuf2 ID=transcript:BL96282_cuf2|Name=transcript:BL96282_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=906bp|location=Sequence derived from alignment at Sc0000036:1825453..1829820+ (Branchiostoma lanceolatum)
GAGAACACCAGGACCAGGACGCTGAAGGCAAAGGACAAGGAGTTCAGCAG
TAGTAGTGTGAATAAGTTTGTCATGGCAGAGCACAAGCACCTGGGCGCCC
TGCAGTCTCTCCGTATCTGGCACAACAACAGTGGGAAGGGTGCTGAGGCG
AGCTGGTACCTGGACAGGGTGCAAGTCCGAGACCTTGACACTAACAAGAT
GTACTACTTCCTGTGCGACAAGTGGCTCGCTGTGAATGAGGACGACGGCG
AGGTCTGTCGTACACTGCCCGTCGCCACGGAGGAGGACATGAAACAATTC
AACACCGTGTTCTTTGCCTCCGTTAAGAGAGACTTCAATGATGGTCACCT
GTGGTTTTCTGTGTTCTCACGTCCGACCAGAAGTAACTTCACCCGAGTTC
AGCGCGTCACGTGCTGCTTGTCTCTGCTCTTCTGCACCATGGTGTCCAAC
GCCATGTGGTATGATACAGAGAAGAAGGTACGGACTGTCCATGCCCTCAC
CATCGGCCCGATCACCCTCACTTTTCACCAGTTGTATGTCAGCTTCATGA
GCAGTATACTCATCTTTCCCGTCAACATTGGGCTCGTCACACTGTTCAGG
AGGATACGAGAAAAAGAATCAGCTACATTTGAGGTTGATACTGGCGAGGA
TACAGCCGAGACTGTAGAAAAAGGTGATTGTAAAGACGATCAAGGCAAGC
AGAGCAAGAAAAAGAAGAAGAAACGTTTCATGTTTCCTCACTGGATGGTG
TACGTGGCGTGGATTGTTGCCTTCCTGGTGACCTTTACGTCCGCGTTCTT
CAGCGTGTTGTACAGTCTGGACTGGGGCGCGAAGAAGTCCATCGCCTGGC
TGACATCCATGCTGATGTCCTTCACCATGTCTGTGTTTGTCGTGGATCCA
ATCAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96282gene:BL96282Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96282_cuf2transcript:BL96282_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96282_cuf2-E1BL96282_cuf2-E1-1564476830-192870Branchiostoma lanceolatumexon
BL96282_cuf2-E2BL96282_cuf2-E2-1564476830-192872Branchiostoma lanceolatumexon
BL96282_cuf2-E3BL96282_cuf2-E3-1564476830-192874Branchiostoma lanceolatumexon
BL96282_cuf2-E4BL96282_cuf2-E4-1564476830-192876Branchiostoma lanceolatumexon
BL96282_cuf2-E5BL96282_cuf2-E5-1564476830-192878Branchiostoma lanceolatumexon
BL96282_cuf2-E6BL96282_cuf2-E6-1564476830-192881Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000036genomeSc0000036:1825453..1829820 +
Properties
Property NameValue
Transcript idBL96282_cuf2
Biotypeprotein_coding