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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96282_cuf2 >transcript:BL96282_cuf2-protein ID=transcript:BL96282_cuf2-protein|Name=transcript:BL96282_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=302bp
ENTRTRTLKAKDKEFSSSSVNKFVMAEHKHLGALQSLRIWHNNSGKGAEA
SWYLDRVQVRDLDTNKMYYFLCDKWLAVNEDDGEVCRTLPVATEEDMKQF
NTVFFASVKRDFNDGHLWFSVFSRPTRSNFTRVQRVTCCLSLLFCTMVSN
AMWYDTEKKVRTVHALTIGPITLTFHQLYVSFMSSILIFPVNIGLVTLFR
RIREKESATFEVDTGEDTAETVEKGDCKDDQGKQSKKKKKKRFMFPHWMV
YVAWIVAFLVTFTSAFFSVLYSLDWGAKKSIAWLTSMLMSFTMSVFVVDP
IK Run BLAST on NCBI mRNA from alignment at Sc0000036:1825453..1829820+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96282_cuf2 ID=transcript:BL96282_cuf2|Name=transcript:BL96282_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4368bp|location=Sequence derived from alignment at Sc0000036:1825453..1829820+ (Branchiostoma lanceolatum)
CGAGAACACCAGGACCAGGACGCTGAAGGCAAAGGACAAGGTACTTTATA
TTTGTGATAAACACAAGAAACTATACGGTAAAGCAGGCTCTGCCCTTGGG
CACCGCCAAAAATTGCCATTTTGCATCTCCGTAGACTTTATGCTACAGAA
GTCTTTCGTGTTCTTCTACATTGATGTGACGTGTTTGTTTTTGCTATTTG
TATACATCAGGAGTTCAGCAGTAGTAGTGTGAATAAGTTTGTCATGGCAG
AGCACAAGCACCTGGGCGCCCTGCAGTCTCTCCGTATCTGGCACAACAAC
AGTGGGAAGGGTGCTGAGGCGAGCTGGTACCTGGACAGGGTGCAAGTCCG
AGACCTTGACACTAACAAGATGTAGGTTAAACATTTGTCTTCAGCCAGTT
ATTCCTGAAGCTAGCTTCACATAATTGCTTCACATTTTTCGAATGGTCAC
ATTGTATAGAGTACTTTATTCTAATGTAAACATACCTGCTGTAGGTTTTG
AAACAAACATAACTTAGTGAAACATTCAAGATATTTCAAAATGTGCAGTC
TTTAGCCTAATGTGTGAGACTCTTAGTAACACTAGTGTAATTTGAAATAA
TGCTAAAATACTTAATAGATAATACCGTAATTTTAAACGTTTAGGTTAAA
CTACATCCGCACAGAATGTTGTCAATGATCATAACGTAGTCCGGGAGACG
ACGTTCTCAACTTGTTTTCTTAGATAAACAAAGCCTCTTCATTCGAAAGA
TAATGTATGGTTAGATATTTGGGTAATGCTATTGTTGTCATTTCAAAACT
TTTATGACATATGTAGGTATTCCTTATATAGCGTCATGCTTCGTCCTCAG
TCTCACTACCCCCCTCTCACTGGACCCGCGGCACGCCGGCGACGTCACTG
CGTCTTAAACTGGATTTGTGTTACCCTTGACTTTATAATGGGAATATCAT
TCGAAACGTACAAGTATGACCAAAAAGACAACGAAACAAAAAAGCTTAAA
AAGATTCGTTTTTTGTCGATGAGTGCTTTGTCAATTTGATCAGCCGCAGC
GACGCCGCCAGCGTGCCGAGGGTCCAGTGAGAGGGGGGCTTTATCTTTAT
TTACGCATTCCTCTCAGGTACTACTTCCTGTGCGACAAGTGGCTCGCTGT
GAATGAGGACGACGGCGAGGTCTGTCGTACACTGCCCGTCGCCACGGAGG
AGGACATGAAACAATTCAACACCGTGTTCTTTGCCTCCGTGAGTTGCACA
CGCCGTAAAATTTGTGTATACAAACCTAGTATTGAACCCTCTTATTTGTA
TCAACTGGAATTTTTTTTTGTCTCTTCATTCTGTCAGATTTACAGCTCAA
GTTGCAGGAGAAGGCCTAGGCTTCAAATTGCAATTAACAAGGACAAAATG
CAACAGCTTCTAATCAGGAGAGGGGGCCCTCAGTAATTATTGTCAGCACC
GCTCCCCAAAAGATTTCTGGGGAGACCTCTGCCGTTATATTGTTTCTTAG
GATTGACAAAGAAGAGAACAGATAATCAAAGAATGTTGCTTTCACTGGCG
AAATTTCTAAATCCATTTTTTCTTAGTGGACATTAGCAAGACCAAGGGTA
GCGTTGGCTGTATTTCTTTATATAGATGAACAAATAAATCAAATCAAATC
AAAGGCAAAGTAAAGGTCGAATATAGCGTACCCTTCAAAAGAAAAGTCGT
ACGGTACATGTACTTTCCGTTGTCGATGTAATAACCCTAACCGAAAAATT
GTAAGTTAAAAAGAGCAAAACAATCCACCCAGGAATAATTTTAGAGTCAT
CGTGTTCACAGACACACACACAGTCAAACATACACACACACATACATACA
TACATACATACATACATACACAGAAAGACTGAACCGAAAACATAATCTTC
AATTCTAAGCGAAGGTATCTAAAGGTGTATTTGTAAGACTCGACCATCAT
CAAACAAGACCAACGTATCTCCTGGGTACACATGTTGTTTGTTAGTTGGT
TGGTTTATTTTAACAAGATCTCTGTTATTTTTTCAATTCTAATAACCCTC
AGAAATATTCTACCTAGAGCCAGCTTACACATGAAATACAATAGATACAA
TTAAACATTGAAGCTTCTACTTTTCTTTGCAGGTTAAGAGAGACTTCAAT
GATGGTCACCTGTGGTTTTCTGTGTTCTCACGTCCGACCAGAAGTAACTT
CACCCGAGTTCAGCGCGTCACGTGCTGCTTGTCTCTGCTCTTCTGCACCA
TGGTGTCCAACGCCATGTGGTATGTGAATCAATTGATCTTCCAACATTTA
TTAATTTATTTTTTGAGTGAGTGAGATTTACCACATTTGTGGAAGGATTG
ACATAAAAGGTGAACTATCACCTTTTCAAGATGTCAACCCAGACCGGACT
GTAAGGTTTGGACCATCGCACACCGGGTCATGCCCCCACTCTTTTTCGAA
GGTGTGGTGGGTTCTTTAACGTGCGCGGGGTATGGCTCTCCCCAAACACG
AGACCTCCGTTTAACGTCCTATCCAAGGGGCGTCCCTAACCGAAGCTAGG
TACTCATTTACACCTGAATGAAGTGAGGACATTTGTGTTAAGTGCCTTTC
CCAAGGGCACAATGTCCGGGCGCATGTCAAGACATGTCTAAGGGCAAGCC
GGGATCGAACTCGGGTTTCCTTGTTTGACAGCCGAATGTTCTAGCCGTTT
CGCCACACGCGTACGCCACAATTCTGTTACGGTTTAATAGATAGGCCTCT
ATTTGTGATATAATTGTATGCTGGGAGACGTGGAGCACCATGGATACATG
TACCTCAAGGGTAAAGTAAAATCCTGACCACAAACACCAACCGGACACAC
GTGCGCAATCGTGTTGTCATGGTAATGATGTTGATTGCCCCCTGAGCTAC
CCATAGTTCCCCGCGTCTCCCAGCATGCAATGGAATCCAGGGAAAGGTCT
GAAGTATGGGAATATGTTATGGTCTCGAATGCCTAGCGTAAACCACACCT
AGTCTTGTTTATCATCAGTCAGCTTCTGAGCAATTTTTAAATACATTTTC
TGTCAATTTTTTCGACAAACAAGGACGACGTAGCACAGCACACAAGTTTT
TTTCATAACTCGTGTTAACAGTGCCACGTACAGAGAAGGATATACCTATT
TGTAAACCTGGGTGGAGTGAGAAAGTCGTGTTAAGAGCAAACGTTACATG
GTGGAACCATATATATTATGCCTACACTGTTCTCAATGGTTTATGTTAAT
CCTGACACACTGACATTATTAACGATAGGCTATAATCATTTATGCAGGTA
TGATACAGAGAAGAAGGTACGGACTGTCCATGCCCTCACCATCGGCCCGA
TCACCCTCACTTTTCACCAGTTGTATGTCAGCTTCATGAGCAGTATACTC
ATCTTTCCCGTCAACATTGGGCTCGTCACACTGTTCAGGTAAACTTTGAA
ACTTTATTCAAGTACAACTTCGCAGACGCTATGTCTGAATTATGTTGACT
TTTTACAGAGGTTTGTAACACATTTTAAATTGATACTGACAAATCATTCT
TAAAATCGTCAAATTGAAATTGTAACGGCAGATTAAAACTCAGTTAACAT
TCGAATATACAGGATAAACAACAGTTAACAATGCCATATAATATAATATA
ATCCTATACTAGTGTTCCGTAGCGACAATGTAAATCGTCTTATAAGTACG
GTACTTTACTCGGAACACGACAGTACTAACGTCCTGGAGGAATTTAGTAA
TGTATAGCTTACTATATTCTTACTAATTGTAAGCATCCTTTTAAGTTGAA
GCCAAAATTGTAAAATGCAATGGCTAACACAGAAATCACTAGCAAACGAC
AGGAATTTTGTGATGAAATGAATTTTACAATTAGCGAATTGTTTTCATTT
ACAGTTTTAACATTTTACAGCGTTTAAACTCGTCACTGTACCACGAAATA
CTTTTTTTGCTCATTTCTTGTAAACATATAGGAAGGTTCAATATGAAATT
GTTAACAGAAACAGGTACATTCTATAATGCTTTGTTTAAATTTTATGTAA
TCTCAATAGGAGGATACGAGAAAAAGAATCAGCTACATTTGAGGTTGATA
CTGGCGAGGATACAGCCGAGACTGTAGAAAAAGGTGATTGTAAAGACGAT
CAAGGCAAGCAGAGCAAGAAAAAGAAGAAGAAACGTTTCATGTTTCCTCA
CTGGATGGTGTACGTGGCGTGGATTGTTGCCTTCCTGGTGACCTTTACGT
CCGCGTTCTTCAGCGTGTTGTACAGTCTGGACTGGGGCGCGAAGAAGTCC
ATCGCCTGGCTGACATCCATGCTGATGTCCTTCACCATGTCTGTGTTTGT
CGTGGATCCAATCAAGGT Coding sequence (CDS) from alignment at Sc0000036:1825453..1829820+ >transcript:BL96282_cuf2 ID=transcript:BL96282_cuf2|Name=transcript:BL96282_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=5436bp|location=Sequence derived from alignment at Sc0000036:1825453..1829820+ (Branchiostoma lanceolatum)
GAGAACACCAGGACCAGGACGCTGAAGGCAAAGGACAAGGAGTTCAGCAG
TAGTAGTGTGAATAAGTTTGTCATGGCAGAGCACAAGCACCTGGGCGCCC
TGCAGTCTCTCCGTATCTGGCACAACAACAGTGGGAAGGGTGCTGAGGCG
AGCTGGTACCTGGACAGGGTGCAAGTCCGAGACCTTGACACTAACAAGAT
GTACTACTTCCTGTGCGACAAGTGGCTCGCTGTGAATGAGGACGACGGCG
AGGTCTGTCGTACACTGCCCGTCGCCACGGAGGAGGACATGAAACAATTC
AACACCGTGTTCTTTGCCTCCGTTAAGAGAGACTTCAATGATGGTCACCT
GTGGTTTTCTGTGTTCTCACGTCCGACCAGAAGTAACTTCACCCGAGTTC
AGCGCGTCACGTGCTGCTTGTCTCTGCTCTTCTGCACCATGGTGTCCAAC
GCCATGTGGTATGATACAGAGAAGAAGGTACGGACTGTCCATGCCCTCAC
CATCGGCCCGATCACCCTCACTTTTCACCAGTTGTATGTCAGCTTCATGA
GCAGTATACTCATCTTTCCCGTCAACATTGGGCTCGTCACACTGTTCAGG
AGGATACGAGAAAAAGAATCAGCTACATTTGAGGTTGATACTGGCGAGGA
TACAGCCGAGACTGTAGAAAAAGGTGATTGTAAAGACGATCAAGGCAAGC
AGAGCAAGAAAAAGAAGAAGAAACGTTTCATGTTTCCTCACTGGATGGTG
TACGTGGCGTGGATTGTTGCCTTCCTGGTGACCTTTACGTCCGCGTTCTT
CAGCGTGTTGTACAGTCTGGACTGGGGCGCGAAGAAGTCCATCGCCTGGC
TGACATCCATGCTGATGTCCTTCACCATGTCTGTGTTTGTCGTGGATCCA
ATCAAGGAGAACACCAGGACCAGGACGCTGAAGGCAAAGGACAAGGAGTT
CAGCAGTAGTAGTGTGAATAAGTTTGTCATGGCAGAGCACAAGCACCTGG
GCGCCCTGCAGTCTCTCCGTATCTGGCACAACAACAGTGGGAAGGGTGCT
GAGGCGAGCTGGTACCTGGACAGGGTGCAAGTCCGAGACCTTGACACTAA
CAAGATGTACTACTTCCTGTGCGACAAGTGGCTCGCTGTGAATGAGGACG
ACGGCGAGGTCTGTCGTACACTGCCCGTCGCCACGGAGGAGGACATGAAA
CAATTCAACACCGTGTTCTTTGCCTCCGTTAAGAGAGACTTCAATGATGG
TCACCTGTGGTTTTCTGTGTTCTCACGTCCGACCAGAAGTAACTTCACCC
GAGTTCAGCGCGTCACGTGCTGCTTGTCTCTGCTCTTCTGCACCATGGTG
TCCAACGCCATGTGGTATGATACAGAGAAGAAGGTACGGACTGTCCATGC
CCTCACCATCGGCCCGATCACCCTCACTTTTCACCAGTTGTATGTCAGCT
TCATGAGCAGTATACTCATCTTTCCCGTCAACATTGGGCTCGTCACACTG
TTCAGGAGGATACGAGAAAAAGAATCAGCTACATTTGAGGTTGATACTGG
CGAGGATACAGCCGAGACTGTAGAAAAAGGTGATTGTAAAGACGATCAAG
GCAAGCAGAGCAAGAAAAAGAAGAAGAAACGTTTCATGTTTCCTCACTGG
ATGGTGTACGTGGCGTGGATTGTTGCCTTCCTGGTGACCTTTACGTCCGC
GTTCTTCAGCGTGTTGTACAGTCTGGACTGGGGCGCGAAGAAGTCCATCG
CCTGGCTGACATCCATGCTGATGTCCTTCACCATGTCTGTGTTTGTCGTG
GATCCAATCAAGGAGAACACCAGGACCAGGACGCTGAAGGCAAAGGACAA
GGAGTTCAGCAGTAGTAGTGTGAATAAGTTTGTCATGGCAGAGCACAAGC
ACCTGGGCGCCCTGCAGTCTCTCCGTATCTGGCACAACAACAGTGGGAAG
GGTGCTGAGGCGAGCTGGTACCTGGACAGGGTGCAAGTCCGAGACCTTGA
CACTAACAAGATGTACTACTTCCTGTGCGACAAGTGGCTCGCTGTGAATG
AGGACGACGGCGAGGTCTGTCGTACACTGCCCGTCGCCACGGAGGAGGAC
ATGAAACAATTCAACACCGTGTTCTTTGCCTCCGTTAAGAGAGACTTCAA
TGATGGTCACCTGTGGTTTTCTGTGTTCTCACGTCCGACCAGAAGTAACT
TCACCCGAGTTCAGCGCGTCACGTGCTGCTTGTCTCTGCTCTTCTGCACC
ATGGTGTCCAACGCCATGTGGTATGATACAGAGAAGAAGGTACGGACTGT
CCATGCCCTCACCATCGGCCCGATCACCCTCACTTTTCACCAGTTGTATG
TCAGCTTCATGAGCAGTATACTCATCTTTCCCGTCAACATTGGGCTCGTC
ACACTGTTCAGGAGGATACGAGAAAAAGAATCAGCTACATTTGAGGTTGA
TACTGGCGAGGATACAGCCGAGACTGTAGAAAAAGGTGATTGTAAAGACG
ATCAAGGCAAGCAGAGCAAGAAAAAGAAGAAGAAACGTTTCATGTTTCCT
CACTGGATGGTGTACGTGGCGTGGATTGTTGCCTTCCTGGTGACCTTTAC
GTCCGCGTTCTTCAGCGTGTTGTACAGTCTGGACTGGGGCGCGAAGAAGT
CCATCGCCTGGCTGACATCCATGCTGATGTCCTTCACCATGTCTGTGTTT
GTCGTGGATCCAATCAAGGAGAACACCAGGACCAGGACGCTGAAGGCAAA
GGACAAGGAGTTCAGCAGTAGTAGTGTGAATAAGTTTGTCATGGCAGAGC
ACAAGCACCTGGGCGCCCTGCAGTCTCTCCGTATCTGGCACAACAACAGT
GGGAAGGGTGCTGAGGCGAGCTGGTACCTGGACAGGGTGCAAGTCCGAGA
CCTTGACACTAACAAGATGTACTACTTCCTGTGCGACAAGTGGCTCGCTG
TGAATGAGGACGACGGCGAGGTCTGTCGTACACTGCCCGTCGCCACGGAG
GAGGACATGAAACAATTCAACACCGTGTTCTTTGCCTCCGTTAAGAGAGA
CTTCAATGATGGTCACCTGTGGTTTTCTGTGTTCTCACGTCCGACCAGAA
GTAACTTCACCCGAGTTCAGCGCGTCACGTGCTGCTTGTCTCTGCTCTTC
TGCACCATGGTGTCCAACGCCATGTGGTATGATACAGAGAAGAAGGTACG
GACTGTCCATGCCCTCACCATCGGCCCGATCACCCTCACTTTTCACCAGT
TGTATGTCAGCTTCATGAGCAGTATACTCATCTTTCCCGTCAACATTGGG
CTCGTCACACTGTTCAGGAGGATACGAGAAAAAGAATCAGCTACATTTGA
GGTTGATACTGGCGAGGATACAGCCGAGACTGTAGAAAAAGGTGATTGTA
AAGACGATCAAGGCAAGCAGAGCAAGAAAAAGAAGAAGAAACGTTTCATG
TTTCCTCACTGGATGGTGTACGTGGCGTGGATTGTTGCCTTCCTGGTGAC
CTTTACGTCCGCGTTCTTCAGCGTGTTGTACAGTCTGGACTGGGGCGCGA
AGAAGTCCATCGCCTGGCTGACATCCATGCTGATGTCCTTCACCATGTCT
GTGTTTGTCGTGGATCCAATCAAGGAGAACACCAGGACCAGGACGCTGAA
GGCAAAGGACAAGGAGTTCAGCAGTAGTAGTGTGAATAAGTTTGTCATGG
CAGAGCACAAGCACCTGGGCGCCCTGCAGTCTCTCCGTATCTGGCACAAC
AACAGTGGGAAGGGTGCTGAGGCGAGCTGGTACCTGGACAGGGTGCAAGT
CCGAGACCTTGACACTAACAAGATGTACTACTTCCTGTGCGACAAGTGGC
TCGCTGTGAATGAGGACGACGGCGAGGTCTGTCGTACACTGCCCGTCGCC
ACGGAGGAGGACATGAAACAATTCAACACCGTGTTCTTTGCCTCCGTTAA
GAGAGACTTCAATGATGGTCACCTGTGGTTTTCTGTGTTCTCACGTCCGA
CCAGAAGTAACTTCACCCGAGTTCAGCGCGTCACGTGCTGCTTGTCTCTG
CTCTTCTGCACCATGGTGTCCAACGCCATGTGGTATGATACAGAGAAGAA
GGTACGGACTGTCCATGCCCTCACCATCGGCCCGATCACCCTCACTTTTC
ACCAGTTGTATGTCAGCTTCATGAGCAGTATACTCATCTTTCCCGTCAAC
ATTGGGCTCGTCACACTGTTCAGGAGGATACGAGAAAAAGAATCAGCTAC
ATTTGAGGTTGATACTGGCGAGGATACAGCCGAGACTGTAGAAAAAGGTG
ATTGTAAAGACGATCAAGGCAAGCAGAGCAAGAAAAAGAAGAAGAAACGT
TTCATGTTTCCTCACTGGATGGTGTACGTGGCGTGGATTGTTGCCTTCCT
GGTGACCTTTACGTCCGCGTTCTTCAGCGTGTTGTACAGTCTGGACTGGG
GCGCGAAGAAGTCCATCGCCTGGCTGACATCCATGCTGATGTCCTTCACC
ATGTCTGTGTTTGTCGTGGATCCAATCAAGGAGAACACCAGGACCAGGAC
GCTGAAGGCAAAGGACAAGGAGTTCAGCAGTAGTAGTGTGAATAAGTTTG
TCATGGCAGAGCACAAGCACCTGGGCGCCCTGCAGTCTCTCCGTATCTGG
CACAACAACAGTGGGAAGGGTGCTGAGGCGAGCTGGTACCTGGACAGGGT
GCAAGTCCGAGACCTTGACACTAACAAGATGTACTACTTCCTGTGCGACA
AGTGGCTCGCTGTGAATGAGGACGACGGCGAGGTCTGTCGTACACTGCCC
GTCGCCACGGAGGAGGACATGAAACAATTCAACACCGTGTTCTTTGCCTC
CGTTAAGAGAGACTTCAATGATGGTCACCTGTGGTTTTCTGTGTTCTCAC
GTCCGACCAGAAGTAACTTCACCCGAGTTCAGCGCGTCACGTGCTGCTTG
TCTCTGCTCTTCTGCACCATGGTGTCCAACGCCATGTGGTATGATACAGA
GAAGAAGGTACGGACTGTCCATGCCCTCACCATCGGCCCGATCACCCTCA
CTTTTCACCAGTTGTATGTCAGCTTCATGAGCAGTATACTCATCTTTCCC
GTCAACATTGGGCTCGTCACACTGTTCAGGAGGATACGAGAAAAAGAATC
AGCTACATTTGAGGTTGATACTGGCGAGGATACAGCCGAGACTGTAGAAA
AAGGTGATTGTAAAGACGATCAAGGCAAGCAGAGCAAGAAAAAGAAGAAG
AAACGTTTCATGTTTCCTCACTGGATGGTGTACGTGGCGTGGATTGTTGC
CTTCCTGGTGACCTTTACGTCCGCGTTCTTCAGCGTGTTGTACAGTCTGG
ACTGGGGCGCGAAGAAGTCCATCGCCTGGCTGACATCCATGCTGATGTCC
TTCACCATGTCTGTGTTTGTCGTGGATCCAATCAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000036 | genome | Sc0000036:1825453..1829820 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96282_cuf2 |
| Biotype | protein_coding |
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