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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96286_cuf3 >transcript:BL96286_cuf3-protein ID=transcript:BL96286_cuf3-protein|Name=transcript:BL96286_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=194bp
TTSAGYQCACADGYELQQDNHTCRPVEKPGDCPDQRTLWPICSDQCTTDG
HCSHDRKCCFNGCGHTCAEPDIDPCSSDHNPCVSEARCEDHFWLGAVCIC
PEGQEGDGRTRGTGCQEPRCPSLTSCTKFCSHGFRLDDEGCPMCECRGSD
KPGQCPAPDDDDDDDDDTGPCWCHCTSDHHCHGNQKCCRVGCSL Run BLAST on NCBI mRNA from alignment at Sc0000036:1025107..1027866- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96286_cuf3 ID=transcript:BL96286_cuf3|Name=transcript:BL96286_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=2760bp|location=Sequence derived from alignment at Sc0000036:1025107..1027866- (Branchiostoma lanceolatum)
GACGACGTCCGCTGGTTACCAGTGCGCCTGCGCTGATGGCTATGAACTTC
AACAGGACAACCACACCTGTAGACCAGGTGAGAAAACTAACAATGGGCCT
ATTGTTGTTTGGCTAAATGAGTTAGCTTGAATCATATGTTTTATGACTTC
TTAAAAGTCAGAGTGAAGTAAATTCTAAACTGCCCATGATGACCGCTCAG
GGGAATAATGAAATATATGTGACTTAAGACAGGATTCTTAACGATTGTGT
CAATGGGAAAGATTGTCTAAGGGACCACAAAAATGGTCATGTTGGCATTG
GTGATTTTTATCTAGAGGTGGTCACTTGCATTGTACACATATGACTGTAT
TTGTTTTAATGTATGAAATACTAGTAGAGCGTTTTGCTATTGGTCTGAAG
TCAATTTTACAATAATATTATTCTAGAATTTCATAAAATCTTATGCAACC
AGCATGCCTTAAACAAATGATTGTGCTACTTGTTGCCTTACAAACCAATT
GTCCTCATCTCCTGTCACTGTCCAGTGGAGAAGCCCGGGGACTGCCCTGA
CCAGAGGACCCTGTGGCCGATATGTAGTGACCAGTGCACGACGGATGGAC
ACTGCTCACATGACCGGAAGTGTTGCTTTAACGGCTGTGGTCACACCTGT
GCGGAACCAGGTGAAAATAAACAAACAATTAAAGACATAAATAAAGCAGT
ACAGTAAAGGGGACAAAAAGTTAAAGTCAAAAAGCCTACTATACTATACC
ATGCTATATAAACCCCAAAGTCAAGTTCTCACTTGTTTTACATAAGTTAT
AGCCCAGGGCAAAAAGTTGCAAACGGTGGGAGAGCCCTGAACTATGACAG
ACTAAATGTGTAAAAAAAAAGTGAGAACTTGACTTTGGTATATATTTAGC
ACAGTATAGTAGGCTTGTCAATTTTAAGTTTCGGTCCCTTTTAAAGATAA
ATATTTGTAAACACCCGGTTTTGTTAGCCCGACAACTTGGAATAGTTGGG
AAACTGAATAATCAATTCATGATTTCTTTATTTGTACACAGATATTGACC
CCTGTAGTAGTGACCACAACCCGTGTGTGTCGGAGGCCCGGTGTGAGGAC
CACTTCTGGCTGGGGGCCGTGTGCATCTGTCCCGAGGGTCAGGAGGGGGA
CGGACGGACCCGGGGGACAGGCTGCCAAGGTACAGCACAGTCATTAACCT
ACAATTTTAAAAGTGTGGCTTGCAAACAAATACATGGGTATGGTAGGAGG
GAAGAACTGTATTGTGTGACAATTGTATCCGGTGCAATGGACTTGTCAGT
TTAGTTATATATTATAATTGCTTATAACTTACAGTTATCTATGAAACTAA
TCTACATTAGAATAAACGGCTCTTGGTGGATTTTAATGTGTAAATATTGG
CACATTGGCGCACCAAATCCGTGGTCTTTGTATTTTTGGCACACATCTTG
ACAGATAAGCCAAAGTGGCTCGGTGGGCGTCACTCCACCGTCAGGAGGGT
CGTGTAAAGTGCCTTTCCCAATGGCACAACGTCGGGGCATGGTGATAATC
AAACCCGGGACAGTAGAACAGGAAAGTCTTACTCTGATAATGCATGCTCA
TACTTTGATAGTTCATAAACATTATGTTGATCAATTCTATTTTTTTTCCT
CAGAGCCCCGCTGTCCTTCCTTGACATCCTGTACAAAGTTCTGCTCTCAT
GGATTTAGGCTTGATGATGAGGGATGTCCCATGTGTGAGTGCAGGGGTGA
GTAGAACGTCGTTGCTCACAGTTGCTCGTGTAACCTTTCCTGCAAAAGTT
ACAGATGTGTAGCAAGAAGAAACTCTCTGTTTTACAGTTTACAATACTAG
TATTCAATTTGACTATTTACAAAGTGTAGGTAATTTCTACGTTTGTCAGA
GGACACCTCTCATTCCACGACCTCGTAATTTGTGGATTTAAAAAGAATAT
TGAATATTATCTTATGACACAAAAATCAATAATTGTTTAAATAATATGGT
TCTTGAGGTAACCATCAGTTTTTTAACTCAGTTAATAAGTTATAATTACA
GTTTGCCATCACTGCTTATGAGGATGCATGGTTTCTTGGGTACTCACACA
AACTGACAATGGCCATCAACTGACTGAATATGTGTCAGACTTTACAACAT
ATCAAAATCAGTAAGGTGGTTAAAATCTAATATATTAAAACGGAGTGCTA
AAGCCGACATCACAATTGATGCGAATGTCGGCCGACTTTGTAGATCGCCC
GCCGAATGTCAAAATCGCCCGAGCGTCGACCGTATTTTCCATGGAATGAA
AATCTCGGGTGACGTCCGTCGAACACTAAAAAGTAAAAATCCCCATGAGA
TGGTACCTATCTTGGACATGGAAGAAGTCAGTATCGACTAACCTGGTAAA
AGGCCAATATTTGGATCGACTTTTATTTCTACCAGTCGCCCGAGGCCCGC
GTAATCGACAGGACGTCGGCGGTACTTCGGCCGAAAATGCATATTTAAAG
CTCGCCAACACGTCGGCCGAGCTGAATTTCTTATTTGTGACGGGGACTTT
AAGAAACAAGCATTCAACATTGCAACATTATAGAAAGAGCTGAAATTTGA
CCTTGTTGCCATGGTTACAGGAAGTGACAAGCCAGGCCAGTGCCCTGCAC
CAGACGATGACGACGATGATGATGACGACACAGGGCCATGCTGGTGCCAC
TGCACGTCCGACCACCATTGCCATGGCAACCAGAAATGCTGTCGTGTGGG
GTGCAGCCTG Coding sequence (CDS) from alignment at Sc0000036:1025107..1027866- >transcript:BL96286_cuf3 ID=transcript:BL96286_cuf3|Name=transcript:BL96286_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=2910bp|location=Sequence derived from alignment at Sc0000036:1025107..1027866- (Branchiostoma lanceolatum)
ACGACGTCCGCTGGTTACCAGTGCGCCTGCGCTGATGGCTATGAACTTCA
ACAGGACAACCACACCTGTAGACCAGTGGAGAAGCCCGGGGACTGCCCTG
ACCAGAGGACCCTGTGGCCGATATGTAGTGACCAGTGCACGACGGATGGA
CACTGCTCACATGACCGGAAGTGTTGCTTTAACGGCTGTGGTCACACCTG
TGCGGAACCAGATATTGACCCCTGTAGTAGTGACCACAACCCGTGTGTGT
CGGAGGCCCGGTGTGAGGACCACTTCTGGCTGGGGGCCGTGTGCATCTGT
CCCGAGGGTCAGGAGGGGGACGGACGGACCCGGGGGACAGGCTGCCAAGA
GCCCCGCTGTCCTTCCTTGACATCCTGTACAAAGTTCTGCTCTCATGGAT
TTAGGCTTGATGATGAGGGATGTCCCATGTGTGAGTGCAGGGGAAGTGAC
AAGCCAGGCCAGTGCCCTGCACCAGACGATGACGACGATGATGATGACGA
CACAGGGCCATGCTGGTGCCACTGCACGTCCGACCACCATTGCCATGGCA
ACCAGAAATGCTGTCGTGTGGGGTGCAGCCTGACGACGTCCGCTGGTTAC
CAGTGCGCCTGCGCTGATGGCTATGAACTTCAACAGGACAACCACACCTG
TAGACCAGTGGAGAAGCCCGGGGACTGCCCTGACCAGAGGACCCTGTGGC
CGATATGTAGTGACCAGTGCACGACGGATGGACACTGCTCACATGACCGG
AAGTGTTGCTTTAACGGCTGTGGTCACACCTGTGCGGAACCAGATATTGA
CCCCTGTAGTAGTGACCACAACCCGTGTGTGTCGGAGGCCCGGTGTGAGG
ACCACTTCTGGCTGGGGGCCGTGTGCATCTGTCCCGAGGGTCAGGAGGGG
GACGGACGGACCCGGGGGACAGGCTGCCAAGAGCCCCGCTGTCCTTCCTT
GACATCCTGTACAAAGTTCTGCTCTCATGGATTTAGGCTTGATGATGAGG
GATGTCCCATGTGTGAGTGCAGGGGAAGTGACAAGCCAGGCCAGTGCCCT
GCACCAGACGATGACGACGATGATGATGACGACACAGGGCCATGCTGGTG
CCACTGCACGTCCGACCACCATTGCCATGGCAACCAGAAATGCTGTCGTG
TGGGGTGCAGCCTGACGACGTCCGCTGGTTACCAGTGCGCCTGCGCTGAT
GGCTATGAACTTCAACAGGACAACCACACCTGTAGACCAGTGGAGAAGCC
CGGGGACTGCCCTGACCAGAGGACCCTGTGGCCGATATGTAGTGACCAGT
GCACGACGGATGGACACTGCTCACATGACCGGAAGTGTTGCTTTAACGGC
TGTGGTCACACCTGTGCGGAACCAGATATTGACCCCTGTAGTAGTGACCA
CAACCCGTGTGTGTCGGAGGCCCGGTGTGAGGACCACTTCTGGCTGGGGG
CCGTGTGCATCTGTCCCGAGGGTCAGGAGGGGGACGGACGGACCCGGGGG
ACAGGCTGCCAAGAGCCCCGCTGTCCTTCCTTGACATCCTGTACAAAGTT
CTGCTCTCATGGATTTAGGCTTGATGATGAGGGATGTCCCATGTGTGAGT
GCAGGGGAAGTGACAAGCCAGGCCAGTGCCCTGCACCAGACGATGACGAC
GATGATGATGACGACACAGGGCCATGCTGGTGCCACTGCACGTCCGACCA
CCATTGCCATGGCAACCAGAAATGCTGTCGTGTGGGGTGCAGCCTGACGA
CGTCCGCTGGTTACCAGTGCGCCTGCGCTGATGGCTATGAACTTCAACAG
GACAACCACACCTGTAGACCAGTGGAGAAGCCCGGGGACTGCCCTGACCA
GAGGACCCTGTGGCCGATATGTAGTGACCAGTGCACGACGGATGGACACT
GCTCACATGACCGGAAGTGTTGCTTTAACGGCTGTGGTCACACCTGTGCG
GAACCAGATATTGACCCCTGTAGTAGTGACCACAACCCGTGTGTGTCGGA
GGCCCGGTGTGAGGACCACTTCTGGCTGGGGGCCGTGTGCATCTGTCCCG
AGGGTCAGGAGGGGGACGGACGGACCCGGGGGACAGGCTGCCAAGAGCCC
CGCTGTCCTTCCTTGACATCCTGTACAAAGTTCTGCTCTCATGGATTTAG
GCTTGATGATGAGGGATGTCCCATGTGTGAGTGCAGGGGAAGTGACAAGC
CAGGCCAGTGCCCTGCACCAGACGATGACGACGATGATGATGACGACACA
GGGCCATGCTGGTGCCACTGCACGTCCGACCACCATTGCCATGGCAACCA
GAAATGCTGTCGTGTGGGGTGCAGCCTGACGACGTCCGCTGGTTACCAGT
GCGCCTGCGCTGATGGCTATGAACTTCAACAGGACAACCACACCTGTAGA
CCAGTGGAGAAGCCCGGGGACTGCCCTGACCAGAGGACCCTGTGGCCGAT
ATGTAGTGACCAGTGCACGACGGATGGACACTGCTCACATGACCGGAAGT
GTTGCTTTAACGGCTGTGGTCACACCTGTGCGGAACCAGATATTGACCCC
TGTAGTAGTGACCACAACCCGTGTGTGTCGGAGGCCCGGTGTGAGGACCA
CTTCTGGCTGGGGGCCGTGTGCATCTGTCCCGAGGGTCAGGAGGGGGACG
GACGGACCCGGGGGACAGGCTGCCAAGAGCCCCGCTGTCCTTCCTTGACA
TCCTGTACAAAGTTCTGCTCTCATGGATTTAGGCTTGATGATGAGGGATG
TCCCATGTGTGAGTGCAGGGGAAGTGACAAGCCAGGCCAGTGCCCTGCAC
CAGACGATGACGACGATGATGATGACGACACAGGGCCATGCTGGTGCCAC
TGCACGTCCGACCACCATTGCCATGGCAACCAGAAATGCTGTCGTGTGGG
GTGCAGCCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000036 | genome | Sc0000036:1025107..1027866 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96286_cuf3 |
| Biotype | protein_coding |
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