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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96288_cuf0 >transcript:BL96288_cuf0-protein ID=transcript:BL96288_cuf0-protein|Name=transcript:BL96288_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=265bp
MEGKPRCGLCTAFLCFLLLQVGGADSESFFLVADRLLKAIYQVDVTSGNK
VSLPLGELPDPSGLDYDHVTDHVYWSDVANGTGKIMRAYRNGTHMEIVAE
NGVISPTDVALDFAGRNVYWTDSGSYVIPVARMDGEYSRVIVREDEPITA
QPQGIALDPENGYMYWTSAGIGGNEAKIERAAMDGSGREILVNTELQFPR
GLAIDVQGQRLYWCDAGFHRIMSSDLQGNDATLVFSITNQPLTFFGIVVY
ESYMYWTAWALDHIT Run BLAST on NCBI mRNA from alignment at Sc0000036:892844..898798+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96288_cuf0 ID=transcript:BL96288_cuf0|Name=transcript:BL96288_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=5955bp|location=Sequence derived from alignment at Sc0000036:892844..898798+ (Branchiostoma lanceolatum)
AACGTACCGCGCAGGGATCTCACTGTTATAGACGGTAAACAAATACGGTC
TGGGCTTGTTTTAGAGCTAAATTTGCGCTAAGTTTCCGCATTTTCTATCA
AGCTACGCTACGATGGAAGGCAAACCTAGGTGTGGATTGTGTACGGCGTT
CCTGTGTTTTCTACTGCTGCAAGGTGAGTACCGATAGAATACAAGGGTGA
CTCTATGGCGCAGTTCTTATAAGGAAGTAAATTCCTGAAAAAATTGCATC
CATGGAGTCTGGTAGGTTGTCACAGAGCGCTTCTTCGGTAGCACTCTGTT
TCACAGCTATATCAAAATAATATGCAATCCTTCGACAAACATAAACGCGA
GTCAATTTGACGCTTATTTGAAAACTTTAACACATTTCCCCACAGTAAAT
AAGTAGTGTAGTCATACTTTGAATATCTAATACTCTGTTTATCTTCACCA
AGCGTTGAAAAAGACCGAAGTCTTTACCAACAACACATGGCCAAGATTAC
ATTCTAAGGTAGAAGAATTCAGTAGGTAGCCTCAAACTACAAGTGACTCA
ATGTCTCCTTCTTTGGGTAAGACAGGAATGTGCCTTTTTTTGTTGCGCAT
GGTTGAATGGGTTGGGAAACAATTAATAAGATATATACTCTCGCATAAAA
CATGTCGGTGATCCTTTTGTTCTATAAAACTTCTCAGAATGGAGACGAAA
TTTACCGCAAAATGCACTGCGGGTGTATGAAGAGAAATATGTCTTACTGT
GTTCTGACAAGGAAATAAAACTCTACTAAACTTTCCTTACACAGTGGGTG
CTCGTACGTCTGTTTCTATTTGTGTGTGTACCCGAGATGTGCGGCGTGCA
TGTTTGTATGTAGGTGTGTGTGTGTGTGCGTGTGTGTGTGTCTGTGTGTG
TGTGTGTGTGTGTGTATGATCGTGTACCAAAATATAGTCGCAGAAACATT
CTATTTGATATAAGACGTTGCTTTTAGTTTACCTTGACATTAACAGGCAA
GCGGGGATGGATTGAATTCTGTTTACAATATCACGCAAACAAACCGTGCA
CCTTATCTGAAAAAGTAAACACTCCAAAAGTCACGTACTTTGGAACACCT
ATGGGCACAGTACTGTAACCACTAGACTCTCTCTCACGCTATAGCGGGCA
ATGGCAGTTTTAGTGTACAGTAAATTTACTTCAACTACTGTAGGCTTTGT
GGTTGCACGGAGACTCGTGTAGAGTACGAATTGACCTCGACCTTTGACTA
GTATAGATGTTGTTATATATATATACATTTATGTCATACATGGGCCGCGA
AAATGTTCGATACGGGTGTTCCGGACCGTGTGATGATTTTCCGTATCACA
CGGGGTTCTAAGTTGTATCACAAGGGCTTCCATAGAATATTTAGAATGCA
TTTTGGGCACGCCGGTTGCGCCGCGGTGAAAAATTTGAATACTGGATTCG
GAGGTTGGAATCAATCTTGTTACATTTTTTTGTTCGAGGCCTAGGACACA
AAACTCCCTCAACTTCTGACGCATTCCGCATTGAAATGTGTGTTTTCTCG
GGGGTATGACATAAATAAGATACAACACGGGGTATTTCGTATCACCCGAG
GTACCATTCCGACCGCGGGTAGGATCGCCCGACGGCCATATATATCATGC
AATTGTTTTAATATACTTAGAATATTGTCATTGATTGTTATTTTGCCCAT
GTCAAAACCTCAATTCCATTTGTAGCATACTGTCTTTGCAGCAGGGCTAG
CCCTTTGTAATAGCCACAGGCTCGTTATAACCACAACCAAAGCAATGAAT
ACGTCGATGAAGATTAGACATCCAGGTAATAAGATACGCCAAAAAGCAAT
TACTCAAACAACTGGATATGATGTTGGAAACGGTCAGACGTTTCAAGTAG
CATCCACTACTTTTCGTCAGTGACTGTGAGCAAGATCAGTTGAACAGCAG
GTTTATAACCACGAACTATGAATTGATATGCAAATAAGGAGAAGACAAAT
TTTTTTAGAAGTCCAATAGAAAGCGAATTAGACAACTCAAGACGAGGTTG
AAGTAAAAGGGGACAATAGCTCCTATTGTTTTAATATAGGAGCTAAATCT
GGTTTGCCCCCAAGGCTGAAGCTGATGATTTCTTTGAACATATCAACCAG
ATAGATGACAACATCAAGTTCACACAGGAGTCGAGTCAAGATAATATGCT
CCCTTTCCTAGACACCAAAACCATCATAGAGAAAGATGGTTGCCTCCAGT
TCGAAGTATACAGGAAGCCGACCCATACCGATCAGTATCTGGCCTTTGAT
TCTCACCACCCTTTGGAACACAAACTGGCAGTTATAAAAACTCTCTTTCA
TCGGGCAGACAACATCATCACCTCAGACACGGCCAAAACAGACGAACATA
GACACCTCCGAGGTGCCCTGGGCAAATGTGGCTACCAAAGATGGACTTTC
AACAAAGCCCTCAAACCGTCTGACCAGTCCAAGAAAACGCCTAAGTGTAC
ACCGTTGACCAACAGAAACAAGGCCAACATCACTATTCCATATGTACAAG
GAGTGTCCGAAAAACTCCGACGGATCTTCCAAAACTTCAACATTGCCACC
AACTTCAAACCGCAATCAACTCTCAGACAAAGACTGGTACATCCTAAAGA
CCGACCCCGCAAAGGCAGCAAGGCCGATGTCATCTACAGACTCAAATGTG
AAGAACCTAACTGCAACAACACTTATATCGGAGAGACCAGTCGATCACTT
AATGAAAGGTACAAAGAACATTGCGCTAACCGCTACTCCTCGGCCATTTT
CCACCACCTAAAACACAACCAGGGGCACTCGTTCAATCTCGAATCCACTG
ATATCCTTGACCGCGAACCCCGCTGGTTCGAACGTGGAGTAAGGGAGGCA
ATATATGAGAGGATATACAATCCAACCCTCAACAGGAAAGGAGGGCTAAG
GGTGGAACTGTCTGGCACTTGGGACATAGCCTTGGGGGCAAACCAGCTTT
AGCTCCTATATTAAAACAATAGGAGCTATTGTCCCCTTTTACTTCAACCT
TGTCTTGAGTTGTCTAATTTGCTTTCTATTGGACTATCTAAAAATTTGTC
TTCTCCTTATTTGCATATCAATTCATAGTTCGTGGTTATAAACCTGCTGT
TCAACTGATCTTGCTCACAGTCACTGACGAAAAGTAGTGGATGCTACTTG
AAACGTCTGACCGTTTCCAAAATCATATCCAGTTGTTTGAGTAATTGCTT
TTTGGCGTAAAGCAATGAATAAGTACATATAAATTAATTTCTATCCATGT
TTTCTTTCACACATCAGTTGGTGGAGCAGATTCGGAAAGCTTCTTTCTAG
TCGCCGACAGGTTGCTGAAAGCAATTTATCAAGTTGACGTCACATCCGGT
AACAAGGTTTCGCTTCCGCTTGGGGAACTTCCGGATCCGTCCGGCCTTGA
CTATGATCACGTGACGGATCACGTGTACTGGTCGGATGTAGCGAACGGTA
CCGGTAAAATCATGCGAGCCTATCGAAACGGGACACACATGGAGATTGTA
GCTGAAAATGGCGTCATCTGTGAGTATTGATGTTAATTTATTGATGTGAA
TATTCCGAACAATAGAACTCTTCAACGATTATCATCAATATCTTAAGATG
ATAATAGTTGCATTGTTTTTTGATCGATTGTTGTGTACGTGTTACACTTC
TGTACGTTTGGGACCGCATAGCGATGCCATCCCCTGTGATTGTACATATG
TAAATACTTTGCGTTTCGGAAAGCATCTCATTATTATGTATACGCAGCGA
CACCTGTGCTGCATTACTATGTGAACCAGTCAGAATTGCTTTGAAGAAGG
TGACAGATTGTCACCGAAACGTCAGTGGAATAAATCTCCTGGTTGTGTAG
AAAAAGAGTATCTTTACTCAATAGAACATTTGCCAATAACCGTGGCCATT
TTGAATTTCCCGGGACCCAGAACCAAAACAAGACTGCGGTTAGTACTCCA
TACAGTATAAGTATGCTACCTTCGGTAGCAAGTTACACCTCTCTAAGGTG
AAATACCACGGTACATGTGCCTATATCTTTGATAAATAGAAAACCTCTGA
AGACGTACTTTTATTATTTTAAAAAATTCTAAAAGACAATCTTTGTGTTT
TCACCCAGCTCCGACTGATGTTGCACTTGACTTTGCTGGAAGGAACGTTT
ACTGGACGGACAGTGGATCTTACGTCATCCCAGTTGCCCGGATGGACGGT
GAATACTCCAGGGTCATTGTCCGAGAGGACGAACCGATAACTGCCCAGCC
ACAGGGAATAGCTCTGGATCCTGAAAACGGGTAAGGCATATTTGTATACT
TGTGGGTAAACAGCTATCTAAAAGTGAGTTGCGAAAACGCTTACAGTACT
TCATCTCCCTTTCTTCTCTCCATCTTATGACTCAAAATCCGTCGATTCTT
AAGAATTGATAAACATTTTATGTTAATTTTTCAAATGGAATATTGTTAAG
GAATCTAGTATGCAGGATAAGAGACTGACTTTCAATACAGTGGCAAATAC
TATTCTTATGCTTCGGTAACAATTGAAGAAAGGGGGTCCCGTCGCGTCGG
GTAGTTTGCGGCATGTTTACTTGGCCCACGGGACACCCAGTGGCTATTTT
TGGACACAGCCTAGCCCCCGAACTTTTCTAAATCGTAGTTAAACTAAACC
CGGGACCCGGCGAAAATAGACGTCGTCAGCTAATCGTGAAAACAGCGAGA
GCTACCCTAGCACCACCCCCCTGGATTTTCGGCTTCGGGCTCGGCCGGGG
GTACAGATGTGACCATGGCATAATTTAAACGTTTTTTTTCCAGCTACATG
TACTGGACTTCCGCCGGGATTGGAGGGAATGAAGCTAAGATAGAGCGGGC
GGCAATGGACGGGAGCGGCAGAGAAATATTGGTCAACACGGAGCTGCAGT
TCCCAAGGGGGCTAGCCATTGACGTTCAAGGTATTCAATGTAAATGTTCA
TATCATCTAAAATTCCATACATCACAGCAAACATCTTACAAACCCTTTGA
AAATAATGAATGAAGTGTAGACCCCTTTCCAAACTCCGCCGCCAATCTGG
ATCTTCTATAGCGAGAGTACAATTCGGCGCGGGCGTGCGGGATTTGAGCA
CGCTAGCGGTAAAACGATCACAGAGCTCGGCGCTTAAGAACACGCTATTC
ATGGGCGACAGGCGTCCCCAATAGTAGTTCGTGTACGAAGTAGTGCGTCA
CATTGCTTGAAAAGGCCGTAGTTTTTCTTCCGTGCACGTTAGCGAGGCTG
AAACTGTGGTAAATGGCAGAGGAATACGTCAGTTTTGAGACTATACGAGT
TGGATTACGATGTTTGTTCGGTCGGGTTGCATTCGCACCTGAATATTGTT
AGCGCCCGACTACTGTGAGTCGGCTGCAGTACTGTGACCTCCGCTGGGGG
TGATATCAAAGTCGCTTTTAAAAAAGAACGAGCCGGCAAATTTAACCTCA
TTTGCGCATATTTTGCAGATTGAACCTTGAAGTCAAACATATAAAAATCT
GTCACCCTAATTGTGCAGCTTTCTATAAATTTTAAGCGTCGAAGCTTCTC
ATTTTGGGATCCTTAACTATGTAAATCCCTGTAGGGGCAATACTATTTTC
TGCAACCTTAAAAATGGCGTTCCCAGTGGAAAAAAGCGTCGAGTCATATT
CGATGTGGAGTTGTACATGTCACGTATACACAATATCCGATAAAAGTGAT
CTACATACAAAATATGAATTGCCTACTTAGGACAGAGACTGTATTGGTGC
GATGCGGGCTTCCATCGTATTATGAGTTCAGATCTACAAGGAAACGATGC
CACGCTTGTATTCAGCATCACAAACCAACCTCTGACATTCTTCGGAATTG
TGGTCTATGAATCGTACATGTACTGGACGGCATGGGCACTGGATCACATA
ACGAG Coding sequence (CDS) from alignment at Sc0000036:892844..898798+ >transcript:BL96288_cuf0 ID=transcript:BL96288_cuf0|Name=transcript:BL96288_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3975bp|location=Sequence derived from alignment at Sc0000036:892844..898798+ (Branchiostoma lanceolatum)
ATGGAAGGCAAACCTAGGTGTGGATTGTGTACGGCGTTCCTGTGTTTTCT
ACTGCTGCAAGTTGGTGGAGCAGATTCGGAAAGCTTCTTTCTAGTCGCCG
ACAGGTTGCTGAAAGCAATTTATCAAGTTGACGTCACATCCGGTAACAAG
GTTTCGCTTCCGCTTGGGGAACTTCCGGATCCGTCCGGCCTTGACTATGA
TCACGTGACGGATCACGTGTACTGGTCGGATGTAGCGAACGGTACCGGTA
AAATCATGCGAGCCTATCGAAACGGGACACACATGGAGATTGTAGCTGAA
AATGGCGTCATCTCTCCGACTGATGTTGCACTTGACTTTGCTGGAAGGAA
CGTTTACTGGACGGACAGTGGATCTTACGTCATCCCAGTTGCCCGGATGG
ACGGTGAATACTCCAGGGTCATTGTCCGAGAGGACGAACCGATAACTGCC
CAGCCACAGGGAATAGCTCTGGATCCTGAAAACGGCTACATGTACTGGAC
TTCCGCCGGGATTGGAGGGAATGAAGCTAAGATAGAGCGGGCGGCAATGG
ACGGGAGCGGCAGAGAAATATTGGTCAACACGGAGCTGCAGTTCCCAAGG
GGGCTAGCCATTGACGTTCAAGGACAGAGACTGTATTGGTGCGATGCGGG
CTTCCATCGTATTATGAGTTCAGATCTACAAGGAAACGATGCCACGCTTG
TATTCAGCATCACAAACCAACCTCTGACATTCTTCGGAATTGTGGTCTAT
GAATCGTACATGTACTGGACGGCATGGGCACTGGATCACATAACGATGGA
AGGCAAACCTAGGTGTGGATTGTGTACGGCGTTCCTGTGTTTTCTACTGC
TGCAAGTTGGTGGAGCAGATTCGGAAAGCTTCTTTCTAGTCGCCGACAGG
TTGCTGAAAGCAATTTATCAAGTTGACGTCACATCCGGTAACAAGGTTTC
GCTTCCGCTTGGGGAACTTCCGGATCCGTCCGGCCTTGACTATGATCACG
TGACGGATCACGTGTACTGGTCGGATGTAGCGAACGGTACCGGTAAAATC
ATGCGAGCCTATCGAAACGGGACACACATGGAGATTGTAGCTGAAAATGG
CGTCATCTCTCCGACTGATGTTGCACTTGACTTTGCTGGAAGGAACGTTT
ACTGGACGGACAGTGGATCTTACGTCATCCCAGTTGCCCGGATGGACGGT
GAATACTCCAGGGTCATTGTCCGAGAGGACGAACCGATAACTGCCCAGCC
ACAGGGAATAGCTCTGGATCCTGAAAACGGCTACATGTACTGGACTTCCG
CCGGGATTGGAGGGAATGAAGCTAAGATAGAGCGGGCGGCAATGGACGGG
AGCGGCAGAGAAATATTGGTCAACACGGAGCTGCAGTTCCCAAGGGGGCT
AGCCATTGACGTTCAAGGACAGAGACTGTATTGGTGCGATGCGGGCTTCC
ATCGTATTATGAGTTCAGATCTACAAGGAAACGATGCCACGCTTGTATTC
AGCATCACAAACCAACCTCTGACATTCTTCGGAATTGTGGTCTATGAATC
GTACATGTACTGGACGGCATGGGCACTGGATCACATAACGATGGAAGGCA
AACCTAGGTGTGGATTGTGTACGGCGTTCCTGTGTTTTCTACTGCTGCAA
GTTGGTGGAGCAGATTCGGAAAGCTTCTTTCTAGTCGCCGACAGGTTGCT
GAAAGCAATTTATCAAGTTGACGTCACATCCGGTAACAAGGTTTCGCTTC
CGCTTGGGGAACTTCCGGATCCGTCCGGCCTTGACTATGATCACGTGACG
GATCACGTGTACTGGTCGGATGTAGCGAACGGTACCGGTAAAATCATGCG
AGCCTATCGAAACGGGACACACATGGAGATTGTAGCTGAAAATGGCGTCA
TCTCTCCGACTGATGTTGCACTTGACTTTGCTGGAAGGAACGTTTACTGG
ACGGACAGTGGATCTTACGTCATCCCAGTTGCCCGGATGGACGGTGAATA
CTCCAGGGTCATTGTCCGAGAGGACGAACCGATAACTGCCCAGCCACAGG
GAATAGCTCTGGATCCTGAAAACGGCTACATGTACTGGACTTCCGCCGGG
ATTGGAGGGAATGAAGCTAAGATAGAGCGGGCGGCAATGGACGGGAGCGG
CAGAGAAATATTGGTCAACACGGAGCTGCAGTTCCCAAGGGGGCTAGCCA
TTGACGTTCAAGGACAGAGACTGTATTGGTGCGATGCGGGCTTCCATCGT
ATTATGAGTTCAGATCTACAAGGAAACGATGCCACGCTTGTATTCAGCAT
CACAAACCAACCTCTGACATTCTTCGGAATTGTGGTCTATGAATCGTACA
TGTACTGGACGGCATGGGCACTGGATCACATAACGATGGAAGGCAAACCT
AGGTGTGGATTGTGTACGGCGTTCCTGTGTTTTCTACTGCTGCAAGTTGG
TGGAGCAGATTCGGAAAGCTTCTTTCTAGTCGCCGACAGGTTGCTGAAAG
CAATTTATCAAGTTGACGTCACATCCGGTAACAAGGTTTCGCTTCCGCTT
GGGGAACTTCCGGATCCGTCCGGCCTTGACTATGATCACGTGACGGATCA
CGTGTACTGGTCGGATGTAGCGAACGGTACCGGTAAAATCATGCGAGCCT
ATCGAAACGGGACACACATGGAGATTGTAGCTGAAAATGGCGTCATCTCT
CCGACTGATGTTGCACTTGACTTTGCTGGAAGGAACGTTTACTGGACGGA
CAGTGGATCTTACGTCATCCCAGTTGCCCGGATGGACGGTGAATACTCCA
GGGTCATTGTCCGAGAGGACGAACCGATAACTGCCCAGCCACAGGGAATA
GCTCTGGATCCTGAAAACGGCTACATGTACTGGACTTCCGCCGGGATTGG
AGGGAATGAAGCTAAGATAGAGCGGGCGGCAATGGACGGGAGCGGCAGAG
AAATATTGGTCAACACGGAGCTGCAGTTCCCAAGGGGGCTAGCCATTGAC
GTTCAAGGACAGAGACTGTATTGGTGCGATGCGGGCTTCCATCGTATTAT
GAGTTCAGATCTACAAGGAAACGATGCCACGCTTGTATTCAGCATCACAA
ACCAACCTCTGACATTCTTCGGAATTGTGGTCTATGAATCGTACATGTAC
TGGACGGCATGGGCACTGGATCACATAACGATGGAAGGCAAACCTAGGTG
TGGATTGTGTACGGCGTTCCTGTGTTTTCTACTGCTGCAAGTTGGTGGAG
CAGATTCGGAAAGCTTCTTTCTAGTCGCCGACAGGTTGCTGAAAGCAATT
TATCAAGTTGACGTCACATCCGGTAACAAGGTTTCGCTTCCGCTTGGGGA
ACTTCCGGATCCGTCCGGCCTTGACTATGATCACGTGACGGATCACGTGT
ACTGGTCGGATGTAGCGAACGGTACCGGTAAAATCATGCGAGCCTATCGA
AACGGGACACACATGGAGATTGTAGCTGAAAATGGCGTCATCTCTCCGAC
TGATGTTGCACTTGACTTTGCTGGAAGGAACGTTTACTGGACGGACAGTG
GATCTTACGTCATCCCAGTTGCCCGGATGGACGGTGAATACTCCAGGGTC
ATTGTCCGAGAGGACGAACCGATAACTGCCCAGCCACAGGGAATAGCTCT
GGATCCTGAAAACGGCTACATGTACTGGACTTCCGCCGGGATTGGAGGGA
ATGAAGCTAAGATAGAGCGGGCGGCAATGGACGGGAGCGGCAGAGAAATA
TTGGTCAACACGGAGCTGCAGTTCCCAAGGGGGCTAGCCATTGACGTTCA
AGGACAGAGACTGTATTGGTGCGATGCGGGCTTCCATCGTATTATGAGTT
CAGATCTACAAGGAAACGATGCCACGCTTGTATTCAGCATCACAAACCAA
CCTCTGACATTCTTCGGAATTGTGGTCTATGAATCGTACATGTACTGGAC
GGCATGGGCACTGGATCACATAACG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000036 | genome | Sc0000036:892844..898798 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96288_cuf0 |
| Biotype | protein_coding |
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