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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96388_cuf67 >transcript:BL96388_cuf67-protein ID=transcript:BL96388_cuf67-protein|Name=transcript:BL96388_cuf67|organism=Branchiostoma lanceolatum|type=polypeptide|length=547bp
PVNPKCVDTTRSSATIAWKKPILDGGSDIVGYLVEYRAADSENWEIGTPK
IHTLQFVVTDLTEGAEYYFRVSAINEAGVGPPGDCPGKVLIKDILASPDF
ELDASMKKTLTVRAGQPIRMYVSISGRPEPEIRWEKEGQPLDYRAEVENT
EYSSQLAIYNTNRYDAGRYDLILKNAVGEKTASVNVKVFDTPGPPGPINI
KEVSKDHMVITWTPPTVDGGSAVSNYIVEKRDESRRTWSTVTTNNPKLSC
RIPNLVETVTYFFQVFAENKYGIGEPVESMPAKAQDAVGPPGPVVKLHVA
DITRITAHLEWTKPTFDGGSKVTGYVVETQEAGSVEWEKAGLATECHYQV
LGLTPGHGFRFRVKAQNAAGQGDPADTEMYKAQDEKIAPKINLDVTMRET
VVVKAGHTLTIYAGISGKPVPHTRWAKDGAMMKPDRRLLFKKSHTETRFS
LKEVTRADGGTYALRAYNDAGEKTANVFVKVLDKPGPPASLQIDEVTANS
VSISWRPPTHNGGVEVNNYLVERCDVQRGVWLTVNANVTRFMFKFPD Run BLAST on NCBI mRNA from alignment at Sc0000008:5559791..5566428+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96388_cuf67 ID=transcript:BL96388_cuf67|Name=transcript:BL96388_cuf67|organism=Branchiostoma lanceolatum|type=mRNA|length=6638bp|location=Sequence derived from alignment at Sc0000008:5559791..5566428+ (Branchiostoma lanceolatum)
CACCGGTGAACCCGAAGTGCGTGGACACCACGCGCTCCTCCGCAACCATC
GCATGGAAGAAACCCATCCTGGACGGCGGCAGCGACATCGTCGGCTATCT
CGTGGAGTATCGCGCGGCCGACAGCGAGAACTGGGAGATCGGAACTCCCA
AGATCCACACCCTGCAGTTCGTGGTGACTGACCTGACGGAAGGAGCTGAG
TACTACTTCCGGGTCAGCGCTATCAACGAGGCCGGAGTCGGTCCTCCTGG
AGACTGCCCTGGGAAGGTGCTCATCAAGGACATCCTGGGTACGAGAGCCT
ATCTTGTATTTTGATTGTATCTAATGTAAGGTCAATTGGGGTGCATTCTT
TCATTAATAACAGTGACAGATAAAAAGGATAAGTTAAGGATGTCTTTGCC
AATGCGCCATTAATAGAAGGTATTTCATGATTGTCCTCAAAATTACGCTG
GATAGTTACTTGATACATGTTTCTCGAGGAACTGATAATTGTGCGTTTTA
TGAGTGTGACATTTTGAAAGTAGCTGCTGTTGTTCATCTGTATGATTTTT
GAACAAGACATTTTCATTTTCATAAGGGTGAAAACATGTTTTTAACCAGG
TCATGTTTTTACTCCGCAGCCTCTCCAGACTTTGAGCTGGACGCCAGCAT
GAAGAAGACGCTGACTGTGCGCGCCGGGCAGCCCATCCGCATGTACGTGT
CGATCAGCGGCCGCCCCGAGCCCGAGATCCGCTGGGAGAAGGAGGGACAG
CCGCTCGACTACAGGGCTGAGGTCCGTGCTTTTATTTCATTGGCATCAGT
AATTACAATGTAGCTTAGACATTATTGATAGGCAAGCTTTTTGTACTTAC
CGTCATTTTGTGATGATTTGTCTCCCCGTACTACTTAAGTTGCAAGATGG
CCCCATTCTGCGTAAAATAGACTAGATTTCTGAAATTACGGTAGAGTATA
GGTAGTCATGCTGAATTTAGCGTTGTTGGGAGTTTGGACACTATGCAGGT
CCTCAACTATGCTACCATTTCATTTACATACAAATATAGATATGCAAACA
AGGATGATAAATAAAAAAGCTGTAAGTTGTCGGGTAATACTTCAAATTTA
CAGATTATTGAGATAATGCCATGTCCGTCATCAATTATCAAATAATATCA
AGGCACACTGATATTATACTGATAGAAATTTGATAGTACATGCTATCTGT
GGTGATTGCTATGTTAAAAAATCAACGATGATTTGAAATGCCATAGTAAA
TATATAATAAATGTTATCTGTTGTGATTGCCATGTTCAGGTGGAGAACAC
CGAGTACTCCTCCCAGCTCGCCATCTACAACACCAACCGGTACGACGCCG
GCAGGTACGACCTCATCCTGAAGAACGCCGTCGGCGAGAAGACGGCTTCC
GTCAACGTCAAGGTGTTCGGTAAGTGGAACTTTGGTCTCTTCTAACTGTT
TGATGATATATACTGAATAATAGAGAGGAAAAAAGAAGGACAAACCTAAT
GCTGATAGAGGAATGCCTGCCTGTTTCTGTATACGTGTTCATGGATACGG
GAATGACATATTCCTAATGACAGAACAAACTTGAAAAGATGATAAGCCAT
AAACTTGTTTTTCAGACTTCGTTTTCGTCATGTTTCCTGGACCAGTTAAA
CATATTTTTTGTAATCCAAGAACCAACCAACCAACCAATCAAATGGATGT
AGCCTAATGTACAAGCTTGCTTTGAAATGAGAACTATTGCATGCATAAGA
TAGTCATTCTCTGTTACTTGGAGCTATAACAAGATGTCTTCCTTCCCACC
AGACACACCTGGCCCACCTGGCCCCATCAACATCAAGGAGGTGTCCAAGG
ACCACATGGTGATCACCTGGACGCCGCCCACGGTGGACGGAGGCAGCGCC
GTGTCCAACTACATCGTGGAGAAGCGCGACGAGAGCCGGCGCACCTGGAG
CACCGTCACCACCAACAACCCCAAACTGTCCTGCCGCATCCCCAACCTGG
TCGAGACCGTCACCTACTTCTTCCAGGTGAGAAGACACGAGCGACTCTCT
GCACCAAGTTTGCCCACAGCATGACCACATTAGAACGCACAGCAGATCTC
CCTGTCTAAGAACACGGTTGAAACCTTAGAAACTCTGACAGATTGACTCT
AGTAGCTGCACCCTGTCACACCAGACACCACTCATACCCCAAATAGCCCA
GTACAAGTATAACATGTATAACTGTATCGTAATCGACTAATCAAATCAAC
CGCTAGTTCTGATATCATTTTGAAAATGACGGTAATTTTAAACTTGCTGT
AACAGAAAACATATTTCAGCCACATTTGCTTGAAAATTCATTGATTCATT
CATTTATCAATTAATTCATTCATTCATTTGTTCATTCATTCTTCCAGGTG
TTCGCTGAGAACAAGTACGGCATCGGCGAGCCCGTGGAGTCTATGCCCGC
AAAGGCACAGGACGCTGTCGGTAAGTGTCCTACATTCTTACATATTTCAC
ATACCTCTTATGGGGTGTTTCAAGAATGACATCGAAGTGTGTGGCACTTC
GTAAGGGCCTCTGTTTGACGTTCAGCCTTATGTATAACTCACTTACCTCT
GTGCCATGTGCACATAACAGCATCCCAGATGCCCCATTGGCATTGAACCC
TGCTTTGGACTGTCCTACTACTGGTCAACTCAGTGGCATCTCATACAGAT
TCCTGCCTCGTGTTTGGCCCTATGTGTAACTCTGTTATCTCTGTCCCATG
TGCACATAACAACAACAACAGCAACTCAGTTGCCCGCCCAGTTCCAGAAC
CCTGCTTTGGTCTGCCCTGCTACTGATTATCCATTGGCACCCAATACAGC
CTCCTGGCACGTGTTCTGCCTTATGTATCACTTCCTTATCTCTGTACCAT
GTGCACGTTGCAACAACCAAGCTGCCTGCCCAGTTGTTAAACCCTGCTTT
GGTCTGCCCTGCTGCCTTGCTACTGACTAACTCAGTGGCATCTTATAAGT
ACTCCTGCCCGCCTTGGCAGGCGGTTCGACCAGGGTGCCCAGAGCAGGCT
GACGTCTCCTGAGTTCAAACATGGTTATTATAATCGTTGTCTCCATGGCG
ATACAGGAGGAACAACCCAGTTGATACACTGATGCATAAAGCTTGTATTG
AAGCATGAATTGACGTTGAATTATTGTGCTCAACTATGTCCTATCTGCGA
GAACTTATCTTCAGCTGATTTTTCACATGGTCTGGCCTCACGGTTGTGCA
CTAGCTGGTTTTGTTTGGCGCAAACGCCATGCACTACAAGATTCTACCTT
ACCTTACCTATATCCCTCATACCTGAGGATCGGGCTATGGTCGCTTCGAG
CACCAGCCTTTCCTATTCCTTCGTCTCTGGCTTTTTGTGTGCATTCTGCC
AGCGGTTTTTCCCCTCTAGTTCCTTCCAACATACTCTTTTAAGAAGACAT
GTCACACCTGATTCCATGACCTTGCACAACGCAGGGTAATGACATATCTC
CATATTTTGTGCATGTTGGAATAACTAAATGTTTGATGTTCTATACATGT
CACACACAGTGACAATCTTGCACAACGCAGGGTAATTATATGTCCCCATA
TGATATATAATTCTTCCTGTTGGAGTAACTGCATATTCACTGTTGTACCC
CCCAGGCCCGCCCGGTCCCGTAGTGAAGCTGCACGTGGCTGACATCACCC
GCATCACTGCGCACCTGGAGTGGACCAAGCCCACCTTCGACGGAGGGTCA
AAGGTCACAGGTTACGTGGTGGAGACTCAGGAGGCGGGAAGTGTCGAGTG
GGAGAAGGCCGGCCTGGCGACGGAATGTCACTACCAGGTGGGGAAATAGT
TCTCTTTATTAAAAGTTGCAACACCACAATACACAGTACTAGTGGAGTGC
CAGGCAGACAAGCTGGTGTTGAGGAAATGGTTACTGATTACGTTTTAACA
GCACACCAGGATTCGTACAGATTGTGGTAAGATAGAAGAGAAGCTAATGT
AGACAGCGAATAAAGAAATGTAAGAGAAATTACGTTGATGAAGGTTAGAC
ATCCAGGTAGTAAGATACGCCAAAACTAGTTACTCAAGCAACTGGATACA
ATTTTGAAACAGTCAGACGTTTCAGATAGCATCCGCTGTCTTTCGTCAGT
GACTTTCGTCAGAAAGAGAAAGTAGTAAAATAAAATTAGACACAGAGTTT
GATACAAAGTCGAGTCAAGTCTACCAAACAACGTGTTAAGATAATTACAG
TTCTTAACGTTAGGCATGTTTCAATGATGATTTATATCAAGACATATTCA
TGGGATCTGTAAAACGTATGCAAATCAGACTTAGTCCTAGTATTTGATTC
TGTTCATATCAGACTAAACAACTTTTGCCCACAGGTCCTTGGTTTGACCC
CTGGACATGGCTTCCGCTTCCGGGTCAAGGCCCAGAATGCAGCCGGCCAG
GGTGACCCCGCCGACACAGAGATGTACAAGGCTCAAGACGAAAAGAGTAA
GAACACGGCATATATACTACTACACCATATTGTATAAGATAGATTACTTC
ACCATATTGTATAAGCTAGATTGGATAGCCTAATAGAATGTTATCTATGT
ACCAGTGAATGCCATACTTTGTACCTTGTACAATTGTTGTGCAATAAAGT
TATTGTATTATTGTATTTAACATACATCCAAAACTCCCAAGTGAGAACTG
CTCGTAAAGATCAAGTTAGATCTTCATCATTCAAAACATGTAGAGAGCTA
CTGATCCAATAGCCCTATTAGTTATCGTTGCTAAATGCAGTACTACTATA
TACATGTAGATGCTAGATACACCAGGAAAAGGTGTTATTTTTTTTTGTAC
GCGCAGCAAACACCGGACAACACTTAAGGATGTCTTTCCAAGAGCGTGAA
ACTCGTGCACCGAATAATATACAAACTACAAAATTTCATTTCTAACATGT
ACTGTGACAATACCAGCGCTGTAGATAGGGCTAGGCAATAACTGTATGTT
TGTGTTGCACAGTTGCGCCGAAGATCAACCTAGACGTGACCATGCGTGAG
ACTGTCGTGGTGAAGGCCGGACACACACTAACCATCTATGCTGGCATCAG
TGGCAAGCCTGTGCCCCACACACGCTGGGCTAAGGTAAGGAAAATAACTT
TTCTGTGCCATGTTGAAGTGCCTCCTAGTGAGCACTGTTGGTACTACACC
GACACCATGAAACATAAATAAACTCCTACTAACGATCCTCCAATAGAGGA
AACGGCAGTAGTAACGAAAATCTATTGCTTATTTTGGGTTATTTTGTCAC
CTTTGACAGGACTAACCAGTTTAGAATTAGGTTTCTGAAGGATGACAACA
AAATGAGATTTCTAAAGGAAAATAACAGCATTTCAACCACCTGTGGATTT
AAGGGTCACATTTAACATTTACCCCCCCCCCCCAATCTAGGATGGAGCTA
TGATGAAGCCGGACAGACGTCTGCTGTTTAAGAAGTCTCACACGGAGACC
AGGTTCAGCCTTAAGGAGGTGACCCGCGCAGACGGAGGAACCTACGCGCT
CAGGGCCTACAACGACGCCGGCGAGAAGACCGCCAACGTCTTCGTCAAGG
TTCTTGGTAAGGAACTAAAAAATGCTCTTTCACACCTTACCCTTTATATT
TGGCTGCGATGTTCTTTCAGTGTATCTATGTACATGTATCAATCTGTCAA
TATCAGTATCAATATCGCAACTGCAAAATGGAAAATTTAAAATCTATGAT
CAAATGTTTGCCTTGCATTCAGAAGGTCCATATCAAAGGCCTGAGAAATG
GTACAGTAATGTAAATCATACTCTCTCCACTTAGCACTTATGGGAAATAG
TATGGTAGTTGATCGCACTCCACCAACATTTTGAATGGCGCCTTACTGTG
GTGGCCTGTAAAACGCTATATAATTGTTTTAGATAGAAACGAAGATGGGC
TATATAAATGGTACCGCCCCAATATCGTAAGTAGAAAGGTGTGTGAACGA
TTTTAGCCTAACCTGTAAAACTTATGACCACCTCTCCGTCCCACACAGAC
AAGCCCGGGCCGCCTGCCAGTCTCCAGATCGACGAAGTCACCGCCAACTC
CGTCAGCATCTCCTGGCGTCCGCCCACCCACAACGGTGGGGTGGAGGTCA
ACAACTACCTGGTGGAGAGGTCAGGATAAGTCTTTCACTAATATCATCAA
AGACCAATGCACATGTCTATCACAAGCCTAGAGACTCTTGTTAATTGCTT
TGGATATGCTTCGAGTGGCCTTCAAAAATGTAGTACTACTGTAGATACCA
AAATAAAATGTTAGAATACACGTATTTGAGAGAAACTATTCCTCAGAATA
ACAACAGAAAAATTCAGTGGATTCCCAGAGAGTACAGTTTCTTTTGGCAC
AACAGCACAATGGAGTAGGATATGGCATCTTCGAGTTCTTTCTTTGCCCT
TTTTTCTTCATAAGACATGGATTGTTTTCAAAACATGGTCTTAAATTGCC
AGACACGCTTTGTCTTTAATTTACAACAAAAATAATCAAATGAAAACCTA
TTTTTCTCTCCCTAGATGCGACGTGCAGCGCGGCGTGTGGCTGACCGTGA
ACGCCAACGTCACCAGGTTCATGTTCAAGTTCCCTGAC Coding sequence (CDS) from alignment at Sc0000008:5559791..5566428+ >transcript:BL96388_cuf67 ID=transcript:BL96388_cuf67|Name=transcript:BL96388_cuf67|organism=Branchiostoma lanceolatum|type=CDS|length=1641bp|location=Sequence derived from alignment at Sc0000008:5559791..5566428+ (Branchiostoma lanceolatum)
CCGGTGAACCCGAAGTGCGTGGACACCACGCGCTCCTCCGCAACCATCGC
ATGGAAGAAACCCATCCTGGACGGCGGCAGCGACATCGTCGGCTATCTCG
TGGAGTATCGCGCGGCCGACAGCGAGAACTGGGAGATCGGAACTCCCAAG
ATCCACACCCTGCAGTTCGTGGTGACTGACCTGACGGAAGGAGCTGAGTA
CTACTTCCGGGTCAGCGCTATCAACGAGGCCGGAGTCGGTCCTCCTGGAG
ACTGCCCTGGGAAGGTGCTCATCAAGGACATCCTGGCCTCTCCAGACTTT
GAGCTGGACGCCAGCATGAAGAAGACGCTGACTGTGCGCGCCGGGCAGCC
CATCCGCATGTACGTGTCGATCAGCGGCCGCCCCGAGCCCGAGATCCGCT
GGGAGAAGGAGGGACAGCCGCTCGACTACAGGGCTGAGGTGGAGAACACC
GAGTACTCCTCCCAGCTCGCCATCTACAACACCAACCGGTACGACGCCGG
CAGGTACGACCTCATCCTGAAGAACGCCGTCGGCGAGAAGACGGCTTCCG
TCAACGTCAAGGTGTTCGACACACCTGGCCCACCTGGCCCCATCAACATC
AAGGAGGTGTCCAAGGACCACATGGTGATCACCTGGACGCCGCCCACGGT
GGACGGAGGCAGCGCCGTGTCCAACTACATCGTGGAGAAGCGCGACGAGA
GCCGGCGCACCTGGAGCACCGTCACCACCAACAACCCCAAACTGTCCTGC
CGCATCCCCAACCTGGTCGAGACCGTCACCTACTTCTTCCAGGTGTTCGC
TGAGAACAAGTACGGCATCGGCGAGCCCGTGGAGTCTATGCCCGCAAAGG
CACAGGACGCTGTCGGCCCGCCCGGTCCCGTAGTGAAGCTGCACGTGGCT
GACATCACCCGCATCACTGCGCACCTGGAGTGGACCAAGCCCACCTTCGA
CGGAGGGTCAAAGGTCACAGGTTACGTGGTGGAGACTCAGGAGGCGGGAA
GTGTCGAGTGGGAGAAGGCCGGCCTGGCGACGGAATGTCACTACCAGGTC
CTTGGTTTGACCCCTGGACATGGCTTCCGCTTCCGGGTCAAGGCCCAGAA
TGCAGCCGGCCAGGGTGACCCCGCCGACACAGAGATGTACAAGGCTCAAG
ACGAAAAGATTGCGCCGAAGATCAACCTAGACGTGACCATGCGTGAGACT
GTCGTGGTGAAGGCCGGACACACACTAACCATCTATGCTGGCATCAGTGG
CAAGCCTGTGCCCCACACACGCTGGGCTAAGGATGGAGCTATGATGAAGC
CGGACAGACGTCTGCTGTTTAAGAAGTCTCACACGGAGACCAGGTTCAGC
CTTAAGGAGGTGACCCGCGCAGACGGAGGAACCTACGCGCTCAGGGCCTA
CAACGACGCCGGCGAGAAGACCGCCAACGTCTTCGTCAAGGTTCTTGACA
AGCCCGGGCCGCCTGCCAGTCTCCAGATCGACGAAGTCACCGCCAACTCC
GTCAGCATCTCCTGGCGTCCGCCCACCCACAACGGTGGGGTGGAGGTCAA
CAACTACCTGGTGGAGAGATGCGACGTGCAGCGCGGCGTGTGGCTGACCG
TGAACGCCAACGTCACCAGGTTCATGTTCAAGTTCCCTGAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000008 | genome | Sc0000008:5559791..5566428 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96388_cuf67 |
| Biotype | protein_coding |
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