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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96499_cuf0 >transcript:BL96499_cuf0-protein ID=transcript:BL96499_cuf0-protein|Name=transcript:BL96499_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=287bp
MASKNRTRTALLLMLVYVLWLGRGDSAITVQQAQHLKNKIERLKSKVDAL
NLNMTRTVGTLTTMTEKGLPKISDVPQPSPTSTPGCPISDYVRFNGVCFK
DVAEGNTFDGARRRCAADGGLLAMPKDSATNSFIHQLGDGRAGRWLGLTD
TESEGQWVFEDGQTLASAGFSNWRPGEPNNNANKEHCAYVFDVTHIWNDA
ECNARVGGFICQLDQDVLPGANVNIALGKPAFQTTVVWDMVGGLAVDGNT
NTDYYAGSCQHNDNEHNPSWWVDLGKSYTINRYVLRV Run BLAST on NCBI mRNA from alignment at Sc0000017:1557413..1560833+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96499_cuf0 ID=transcript:BL96499_cuf0|Name=transcript:BL96499_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3421bp|location=Sequence derived from alignment at Sc0000017:1557413..1560833+ (Branchiostoma lanceolatum)
AGCAGTTAGCTATCATTTTCCCTTAAAAAGGAGTTTTAAGTTAAATACCT
CAGATAATCAAGGATGGCAAGCAAGAACCGTACCAGAACGGCCCTGCTGT
TGATGTTGGTTTACGTTCTGTGGTTGGGGAGGGGAGATTCCGCCATCACA
GTGCAACAAGCTCAGCATCTCAAAAGTAAGTATAACATACACCATCTCTC
TCTCTCTCTCTCTGTGCTCCTTTCAGTACAAACATCATTCTGCATAAAGT
AAAAGACTAAGTATGTAGTTCATTTGTGTTATATGCTGTCAAAATGAAAT
AAATCAGAACACAGTTCATTATTGTGCTATATTTGAAGTAAGACTTTAGC
TACTATACAAGCAAAATTAAAACAATGCTGAAGTACAAGAACAGCAATAC
GAATTTCTATTGAGCCATATGGACTAACTATGTGTAGCTAAACTTACTGG
TCCCTATGTGTTAATCATGTATATCAACTTAGCGTTACTATGTATATACT
AGTATTGTGTATACGTCAACATACACATGTATATAAATGTACACGTTGTC
TATCCCTTGATCACTGGCCCTGCTCATATTACCCCTCTTGCATCTCAGTA
TATCCATTAAATCACACTAAGTTCAATAAACATACGGGTCTTTTAGATTA
GAACGTGATAATGAACCAACTCTGACCGGTACATGTTTTTTTCTTGCACA
GACAAAATTGAACGGTTGAAATCAAAGGTCGATGCGTTGAACCTTAACAT
GACCCGAACTGTTGGAACTCTGACAACCATGACGGAGAAAGGACTTCCTA
AGATCTCGGATGTTCCCCAGCCCAGTCCAACTTCAACACCCGGTAAGGCA
TCAGTGTCGTTATTTTCCCAAGGAGCTTTTTGAAACCTCCTTGGTTACCC
TTATCAATCTTGCAAGAGGGGTTATTTTTACGGTGCCGTTTGTGTGTGTG
TGTATGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTATGTGTGTG
TGTGTGTGTGTGTATGTGAATGTGTGTGTGTGTGTGTCAATATTGGGCTT
ACAAGTGGCTTTCGGGAGTACCGCAGGTAAACGTCCGGTTTTTATATCTC
GTATTCTGGACATGTTATGGTCATGATTTTTGAGTGGTTGATTGTTCTTG
AAGTAGGGGTTAAGATGTTGAGGCCCCACATGTTTTTTGGGAACTCCAGG
GGCCTATTCTGATCGAGGCTGTGAAAGACAACGGGTTGACGCCGTGGTCG
ACAGCGTGGCTGGGCCAAGTAATGATAATAATAATAATGGTTTATTCGAT
TCAAACAATCAAACAGCAAAACATGGCAGCCAGATACTGAATTGCGTGGG
ATTTCATTACAACATTCATATTGAAATATTAAGATATACTGTAACGTCTA
TGCATAGTCAGGCGTCTTACTTAAATAAAAAGACATGACTTACTTACAAA
TTACTAACATTTCCACTGATTGAAATAGCTTCATTAAAAGCCTTTATTAC
TTGCACGGTATATATAAAAAAAAAATTATTTTTTATTTTACCAGGGAATT
CACAGCTCAGGCCTGCGGCCTGTTTTTCAGGTGTCCCTGGACACGTACAC
ATACATTAAGAACATAGTATTGCACATATTACATTATAAATAAGCTAAAA
ACATTAGTAGAAAATATATCGCTACAGTCCATTTTTGAAAGCCTTCAAAC
CGGTGATGAAATTTCGAATTTGACAAACAGGAGTATAGCTTATGGGATGG
TCCATAACATGCTCTTGCTTTGGCTTTGAATGGCACATTTGGGATATCGT
TGGGAATGCGACATGGCGTAGCGTATACACCAAGTCATTACCTTAGTATC
AAGGAAAGTTAATGGATAATTAAGGCATTAGCTATAAATCCCTGAAGGTT
AAAACTTCTCGACCTCATTTTCAAGATATCGTTGAAGATGAATATCATTT
CCTAATGACATGTTCCGCATATACTGTAGATAGACGAAAATTACTGGATA
TGATCACAAGTAATTCCAGTAAACCCTTGCCAAACGCAATCACAGATATT
TTGCCTAATTAACTTATGTCATGCCCCGGCAACATATCTAAGTACTTAGG
CTAATACATATGTGGCGCTTTACAAAAGAGAGAATGTATTGTAACAGACA
GAAACGTTTAACGTATATTATATCAATTCGCCATTTACGTTCATATTCTT
GTAGTTATAGTTTTCAGAATAGAATAGACTAGTTTAGTACTCATTGTATT
GATTGCCATGTCATTGTTGCCATACATCGTGGCATGTACAATAGTCGAGC
AATAAAGTTCATTCATCCATTCATTCATTCATTCATTCATTTTCCGCAGG
GTGTCCAATATCAGACTACGTTAGATTCAACGGAGTTTGCTTCAAGGATG
TGGCTGAGGGAAACACGTTTGACGGGGCAAGACGGCGATGTGCCGCAGAC
GGGGGACTGCTGGCAATGCCGAAAGATAGTGCGACCAACTCTTTCATCCA
CCAACTTGGAGACGGCCGCGCAGGGCGCTGGCTGGGGCTGACTGATACCG
AAAGTGAGGGCCAGTGGGTCTTTGAGGACGGCCAAACCTTGGCGTCAGCC
GGCTTTTCAAACTGGAGGCCCGGTGAACCCAACAACAACGCTAATAAAGA
ACACTGTGCCTATGTTTTTGATGTCACTCACATCTGGAATGATGCAGAGT
GCAACGCACGCGTGGGAGGATTCATTTGCCAGTTAGATCAGGGTATATTT
AATCATTACTACAATATTTACAAGGCGCAATTTGCATGTAATACTGATGT
TTATTCCTATCCACATTATGTACGTTAAAGTTATGCTAATTGAATTCAAA
ACAAACATCATAATCTAGAACAAGTTTTAACTGTAGTCGCAAACACACAA
AAAATGGACTTACCCAAATTTTCGACTGTACAACACCAGTCTTTGTCAAG
GAATGAGCGATCCATCGCTGATGACGTCACTTTATGCAAATGAGACATGT
GACTCGGTCAGCAGTGGATCATAAGTTGCAAAAAGTCTGTGGCGTCCCCC
GTCTCTATTGAGGGATGATTGTAAGGCCCTGATGTAAATGACTTCCTTGC
CCCCCCTGCAAACACAGATGAACTTTCAAGCTAAAAGATGATAATCGTTA
TACATTAATTTTACTACTTATCTTTTTTTTCTGATAGACGTCTTGCCAGG
GGCGAATGTCAACATCGCTTTGGGGAAGCCGGCGTTCCAAACAACCGTGG
TGTGGGACATGGTTGGCGGCCTTGCCGTGGATGGGAACACCAATACTGAC
TATTACGCCGGTTCCTGTCAGCACAATGATAACGAACACAACCCCAGTTG
GTGGGTGGATCTTGGAAAATCGTATACGATCAACAGGTACGTGTTACGTG
TGTGATTTTGTGTTAGGAAAC Coding sequence (CDS) from alignment at Sc0000017:1557413..1560833+ >transcript:BL96499_cuf0 ID=transcript:BL96499_cuf0|Name=transcript:BL96499_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3456bp|location=Sequence derived from alignment at Sc0000017:1557413..1560833+ (Branchiostoma lanceolatum)
ATGGCAAGCAAGAACCGTACCAGAACGGCCCTGCTGTTGATGTTGGTTTA
CGTTCTGTGGTTGGGGAGGGGAGATTCCGCCATCACAGTGCAACAAGCTC
AGCATCTCAAAAACAAAATTGAACGGTTGAAATCAAAGGTCGATGCGTTG
AACCTTAACATGACCCGAACTGTTGGAACTCTGACAACCATGACGGAGAA
AGGACTTCCTAAGATCTCGGATGTTCCCCAGCCCAGTCCAACTTCAACAC
CCGGGTGTCCAATATCAGACTACGTTAGATTCAACGGAGTTTGCTTCAAG
GATGTGGCTGAGGGAAACACGTTTGACGGGGCAAGACGGCGATGTGCCGC
AGACGGGGGACTGCTGGCAATGCCGAAAGATAGTGCGACCAACTCTTTCA
TCCACCAACTTGGAGACGGCCGCGCAGGGCGCTGGCTGGGGCTGACTGAT
ACCGAAAGTGAGGGCCAGTGGGTCTTTGAGGACGGCCAAACCTTGGCGTC
AGCCGGCTTTTCAAACTGGAGGCCCGGTGAACCCAACAACAACGCTAATA
AAGAACACTGTGCCTATGTTTTTGATGTCACTCACATCTGGAATGATGCA
GAGTGCAACGCACGCGTGGGAGGATTCATTTGCCAGTTAGATCAGGACGT
CTTGCCAGGGGCGAATGTCAACATCGCTTTGGGGAAGCCGGCGTTCCAAA
CAACCGTGGTGTGGGACATGGTTGGCGGCCTTGCCGTGGATGGGAACACC
AATACTGACTATTACGCCGGTTCCTGTCAGCACAATGATAACGAACACAA
CCCCAGTTGGTGGGTGGATCTTGGAAAATCGTATACGATCAACAGGTACG
TGTTACGTGTGTGAATGGCAAGCAAGAACCGTACCAGAACGGCCCTGCTG
TTGATGTTGGTTTACGTTCTGTGGTTGGGGAGGGGAGATTCCGCCATCAC
AGTGCAACAAGCTCAGCATCTCAAAAACAAAATTGAACGGTTGAAATCAA
AGGTCGATGCGTTGAACCTTAACATGACCCGAACTGTTGGAACTCTGACA
ACCATGACGGAGAAAGGACTTCCTAAGATCTCGGATGTTCCCCAGCCCAG
TCCAACTTCAACACCCGGGTGTCCAATATCAGACTACGTTAGATTCAACG
GAGTTTGCTTCAAGGATGTGGCTGAGGGAAACACGTTTGACGGGGCAAGA
CGGCGATGTGCCGCAGACGGGGGACTGCTGGCAATGCCGAAAGATAGTGC
GACCAACTCTTTCATCCACCAACTTGGAGACGGCCGCGCAGGGCGCTGGC
TGGGGCTGACTGATACCGAAAGTGAGGGCCAGTGGGTCTTTGAGGACGGC
CAAACCTTGGCGTCAGCCGGCTTTTCAAACTGGAGGCCCGGTGAACCCAA
CAACAACGCTAATAAAGAACACTGTGCCTATGTTTTTGATGTCACTCACA
TCTGGAATGATGCAGAGTGCAACGCACGCGTGGGAGGATTCATTTGCCAG
TTAGATCAGGACGTCTTGCCAGGGGCGAATGTCAACATCGCTTTGGGGAA
GCCGGCGTTCCAAACAACCGTGGTGTGGGACATGGTTGGCGGCCTTGCCG
TGGATGGGAACACCAATACTGACTATTACGCCGGTTCCTGTCAGCACAAT
GATAACGAACACAACCCCAGTTGGTGGGTGGATCTTGGAAAATCGTATAC
GATCAACAGGTACGTGTTACGTGTGTGAATGGCAAGCAAGAACCGTACCA
GAACGGCCCTGCTGTTGATGTTGGTTTACGTTCTGTGGTTGGGGAGGGGA
GATTCCGCCATCACAGTGCAACAAGCTCAGCATCTCAAAAACAAAATTGA
ACGGTTGAAATCAAAGGTCGATGCGTTGAACCTTAACATGACCCGAACTG
TTGGAACTCTGACAACCATGACGGAGAAAGGACTTCCTAAGATCTCGGAT
GTTCCCCAGCCCAGTCCAACTTCAACACCCGGGTGTCCAATATCAGACTA
CGTTAGATTCAACGGAGTTTGCTTCAAGGATGTGGCTGAGGGAAACACGT
TTGACGGGGCAAGACGGCGATGTGCCGCAGACGGGGGACTGCTGGCAATG
CCGAAAGATAGTGCGACCAACTCTTTCATCCACCAACTTGGAGACGGCCG
CGCAGGGCGCTGGCTGGGGCTGACTGATACCGAAAGTGAGGGCCAGTGGG
TCTTTGAGGACGGCCAAACCTTGGCGTCAGCCGGCTTTTCAAACTGGAGG
CCCGGTGAACCCAACAACAACGCTAATAAAGAACACTGTGCCTATGTTTT
TGATGTCACTCACATCTGGAATGATGCAGAGTGCAACGCACGCGTGGGAG
GATTCATTTGCCAGTTAGATCAGGACGTCTTGCCAGGGGCGAATGTCAAC
ATCGCTTTGGGGAAGCCGGCGTTCCAAACAACCGTGGTGTGGGACATGGT
TGGCGGCCTTGCCGTGGATGGGAACACCAATACTGACTATTACGCCGGTT
CCTGTCAGCACAATGATAACGAACACAACCCCAGTTGGTGGGTGGATCTT
GGAAAATCGTATACGATCAACAGGTACGTGTTACGTGTGTGAATGGCAAG
CAAGAACCGTACCAGAACGGCCCTGCTGTTGATGTTGGTTTACGTTCTGT
GGTTGGGGAGGGGAGATTCCGCCATCACAGTGCAACAAGCTCAGCATCTC
AAAAACAAAATTGAACGGTTGAAATCAAAGGTCGATGCGTTGAACCTTAA
CATGACCCGAACTGTTGGAACTCTGACAACCATGACGGAGAAAGGACTTC
CTAAGATCTCGGATGTTCCCCAGCCCAGTCCAACTTCAACACCCGGGTGT
CCAATATCAGACTACGTTAGATTCAACGGAGTTTGCTTCAAGGATGTGGC
TGAGGGAAACACGTTTGACGGGGCAAGACGGCGATGTGCCGCAGACGGGG
GACTGCTGGCAATGCCGAAAGATAGTGCGACCAACTCTTTCATCCACCAA
CTTGGAGACGGCCGCGCAGGGCGCTGGCTGGGGCTGACTGATACCGAAAG
TGAGGGCCAGTGGGTCTTTGAGGACGGCCAAACCTTGGCGTCAGCCGGCT
TTTCAAACTGGAGGCCCGGTGAACCCAACAACAACGCTAATAAAGAACAC
TGTGCCTATGTTTTTGATGTCACTCACATCTGGAATGATGCAGAGTGCAA
CGCACGCGTGGGAGGATTCATTTGCCAGTTAGATCAGGACGTCTTGCCAG
GGGCGAATGTCAACATCGCTTTGGGGAAGCCGGCGTTCCAAACAACCGTG
GTGTGGGACATGGTTGGCGGCCTTGCCGTGGATGGGAACACCAATACTGA
CTATTACGCCGGTTCCTGTCAGCACAATGATAACGAACACAACCCCAGTT
GGTGGGTGGATCTTGGAAAATCGTATACGATCAACAGGTACGTGTTACGT
GTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000017 | genome | Sc0000017:1557413..1560833 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96499_cuf0 |
| Biotype | protein_coding |
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