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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96515_cuf2 >transcript:BL96515_cuf2-protein ID=transcript:BL96515_cuf2-protein|Name=transcript:BL96515_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=323bp
IIHVGKMESESAAGEEDHVVSGRNRRVMTSSALVWLSELCERVTYYGILA
NMADYVTSPCFPKRYHLPWVVTWVFTSFAYALTFFGGWLADTVGNRFWTI
LVSMWIYLVGTALLVASSSLCGSSPDGRVSGLYFAGLTLVAIGTGGSKSN
LGLFGAQQYKSSGGDIKVKLRRFFHWYYWCINLGATIGVVGVPYLQKHVS
LLSGYVATCVFVVLSTAVFVSGRIGNYYNQENSTHEIRSRIVVGLLDPSR
KTQRRNPQGRLWSSTIPKEVWKLMQIFATLIPYYAIYSQVWGSCCPHCPC
CQQRWWRFPADSSSTAASPLSRQ Run BLAST on NCBI mRNA from alignment at Sc0000006:3043316..3049630+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96515_cuf2 ID=transcript:BL96515_cuf2|Name=transcript:BL96515_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=6315bp|location=Sequence derived from alignment at Sc0000006:3043316..3049630+ (Branchiostoma lanceolatum)
CATTATACATGTAGGCAAAATGGAAAGCGAAAGTGCGGCGGGGGAAGAAG
ATCACGTGGTCTCAGGTCGAAACCGCCGCGTCATGACGAGCAGCGCCCTG
GTCTGGCTGAGCGAACTGTGCGAGCGCGTGACGTATTATGGGATACTGGC
CAACATGGCGGACTACGTGACGTCACCGTGCTTCCCCAAACGGTACCACC
TGCCGTGGGTGGTCACGTGGGTGTTCACGAGTTTCGCCTACGCTCTGACA
TTCTTCGGGGGTTGGCTCGCCGATACTGTAGGCAACCGCTTCTGGACAAT
TCTGGTCAGCATGTGGATATATCTTGTCGGTGAGATGACATGAATAAATG
ATATTAATAGAACAGGAGATACTAAAAATCCGGAAAGACACTAACTCGGG
AAAACTTTAGTTTTTTACATACATTTTTTAATGTAGATTGACCAAATAAT
TTGATGTCTACAAGCATGATGTAAAAAAAGGTTATCAATATCTGGTTAAC
ACTGATGTCTCCAGGATAATGAGCAGTTGTGTAGATTTCTGGGAACTTCA
GCCAGAAGTTTGGAAAACTGAAAATTGTATCAGGATAAAATAAGATTTTC
CTAAGTACTCTGTGTCATCATCAGTATCAGGTAATGTTATTGTCTTCCCC
AAAATTAATTTCTTAATGTTTTCCGGATTTATCGTGTATTTCTGGATTTA
TAGCGTCGCCTGCTACAACTAGCTTGTAGTAAACATGATAGCATGTTAAC
GTTTATGTAGTCTTTTACTTTTGATATTTAACGAAGGCATGAGGTCTTCG
ACTTCCTGTTGGAAATTGTACCGAGACGTTTGATTCTTGCCCAGCCTAAG
TGACATTATATGACAGGTTTACCCCCGGAACCTGCGGGGTATTGCGGCTG
GTTGTGTCTGTGTGTTCGCAGCTATCTCAAGATTCTTTTGATGTATTTGT
ATGTACTTTGGCATGTCGTCTGCTCGAGATAATGCACGTTGATTTGGGAC
ACCGTGGCAGTATTTCTAGGTTATGTAATATTACAGAACGACACCCCCGC
GATTTAACGTTTAGAAAAAATAGTTTCTACTAGTTTTCTCTAAACGTTAA
ATCGCGGGCGGATTCAATCACTTCCAAAGTGGCAATATTGTCAATCTGAA
AACATCTTTTGGAAGCTGAAACCTTCCACCATCTCACTGGCGAGTTTGTT
TAGTCAGATGTAGTCTTTTAACGCAGTCCGAAAGCGATTTGTCGGGTCAT
GGCTGATAGGAATCTGAGTTTCAATGCGTTTCACGTGGTTTGATGTTTGT
ATCAACGACTTTCAAATGCACCCACCCCATGCAGGGACAGCTCTACTCGT
CGCTTCCTCCAGTTTGTGTGGCTCGAGTCCGGACGGACGTGTGTCCGGGC
TGTACTTTGCCGGCCTGACTCTGGTTGCCATAGGAACGGGAGGCAGCAAG
TCCAACCTGGGTCTGTTCGGCGCACAGCAGTACAAATCGTCTGGAGGGGA
CATAAAAGTCAAGCTGCGACGTTTCTTCCACTGGTAGCGTATAACGTTAA
CGTTACTATTTGAGAGTATTTTCATTCAAAACTGTTCTGTCGCTCTTTTG
ATCACCGCCATATCACTGGCGACAAAGCATACAAACGAATATTTTCCATA
CGCTTTTTTGTGTGTCTTTTAAGTCATACTTGTATGTTTGCCATAATTGC
ATATTTTGCCATTATAAAGTCAAGGTTAACACAAATCTGTAGGACGCCCC
GGGCTCAGTGAGATGGGGGCTTATCGCGTCACAACCAGCAGACGCAAACA
TTCGGCGATTGCCCGTAATAAATCCACTGGTGTGCGGGGCAACCAATCAA
TGTTCAGGTCAACCTCTTCAGGACAGAGGTTTGATCAAAGGAGGTGTGAA
AACAAAAACAGAACTAGAGTTCCACGACCCCACACCTTCGACAAATAATA
TATTTTGAGGTCTCAAAAAATATGCAAATACGGTCCTCGTGAGTATAAGC
ATGTATTATATCAGTTGATGATCACTCAAAGAACGCGGCATGTATCAAAT
TACCGCTATAAAATTATAGCCTTTTCTCATTGGTTAAGCAAATCATGTCC
TCATTGAGTGATATATCAATTGACGTTCTTCACTTTCTCAGTCACATCCA
TCGACAGCTTCTTGAGTTATGCTGTTTATACTACACCATAGCCAAACCGA
AAACACAGCCTTCTTATGAAGGTAACTAGTGGAAATAGCTGACAAATGAA
ACTACTGTTCGACTAAGCAGCTGCACACGTCTAACTTCGAAATTTAAGAA
AATGATTGATTTCTACAGGTACTACTGGTGCATTAACCTGGGCGCTACCA
TTGGCGTGGTAGGGGTGCCGTACCTACAAAAGCACGTCAGTCTGCTGAGT
GGGTACGTGGCGACGTGTGTTTTCGTCGTGCTCTCTACGGCCGTCTTCGT
CTCCGGCCGCATTGGAAACTACTACAATCAGGAAAACAGCACACATGGTT
GGTCCTTTACTCTATTTTCAATCTATTTCCCCCTTTTCTTTATATAGATT
ATTCCTGTTTTATGACCCATACGTTACCTATACAAATGTATTATGATATG
CAGAGATCCGGAGCAGAATCGTCGTTGGACTTCTTGATCCGAGCAGAAAG
ACGCAACGTAGAAACCCACAAGGAAGGTATGGTATAAGAAACTGTTGCTA
ATGTCTTCTTCCGATGGATTTTCGGACAGAAAGAAACTACGACACTGCAT
GTATGCCAGGTATCTGTGGTCTGCTAAGTAAAAAAAAACGCCTGACATAG
TCATGGCTATGGGGTAACGGTCTGAGGCATCGGCTATACAAGACACAAGA
CATTATTCATGAAGGTGACACTAAAAATAAAACTTTCCTATACAGACTGT
GGAGTTCGACCATCCCGAAGGAGGTGTGGAAACTAATGCAAATATTCGCA
ACACTGATCCCGTACTACGCCATCTACTCACAGGTAATGTTTCTGTGCAT
ACTTTACAACAAAAAAGACCATATAAGCATGTCCAGGTCAAAAAATACAA
AACACGGAAGTTCTGCTGCAGTACCAAAGAAAGTTGCCAGGGGGCCCAAA
ATCGAAACAAGCAGACAGGCAGACAGACAGACAGACAGACAGACAGACAG
ACAGACAGACAGACAGACAGACAGACAGACAGACAAACAAACAAACAAAC
AAACAAACACACATGTTTATCTCAACAAAGAAAAATGTGTCCTTACGTTA
TTATGTTCCTTTGTTGATTGGAAGTCAAGTTAAATGGGGAGTGCTGCTAT
GTTCTTGATTACGATTCAGATTCAATCATATCATCAAACTCAGGATTTTC
AAGCATAGCAAGATGCTCGTAGTTGTAAACCAAGCCCATGTAACTATCTT
ATCAGACAATAAAATGAATAGATAACCTTGGAATAATGGAATCATTAATC
CCAACAGACAAGAACGACCTACCTCTTCCAAAGCCAACGTCTGCGCATGC
CCGTGGGGTCAGAGGCCACGTACTTCAGCGCCATCAACAGCCTGACTATC
CTCCTGATGATCCCGCTCATGGTCTGCTTCGTGTATCCCCGCCTGACGAT
CAAGAATGTGCAGCTTACACCACTGACTATCATGGGTACGTTCCAGTAGT
AATGATTAATGTTACATGTTTACAGATTTATTAGAACTTTGATGGTGTTA
TCTAGTTTGTATCTTTGTTATATTCTATCTGACCCTTCCCTCTTCCCTCA
TGACCTCAAAGAAAAGTGACCCTCGGGCCGATTTGACCTTCTCGTGAATA
AACAAAGCTTCAAACAAACAAAACTTTATTTGGTATTGTGTCCTATATGT
CACCGACGATGGCTTATTATGAAATTAATTTTTAGTAAATTCCCTTTTAG
TACTTGGATTTATTTTCATTGAAACAGTATGGCTTTAAATCTATATGTAT
GTTTTTGGTCATATTCGCTCAACCAGTGATATGTAAGAGGTCCTATGCAG
GTTAAGGCACCATCTTTCTGAAAGGGCGTGAATGTATCGGTGAGATAAAG
GTAATTGCAAAGTTAGTGCGTAAGAAGTGTTAGTAGATTTGCCTCTCCCG
CAATATCATTGCTGCGTTTTCTGCGTGGTTGAAGAGATCAATACTACGAG
TATGATAGTTTCCGTTGCTGGCCTCCCGCACGGCGATTTTTCAACTTATC
GGGACCAGGTTCTTTCGCTGGTGGGGCCTTATCTGATTGGGGACCGTATC
TGCTTGGGGCCCGGTTACAGTCCCCCAAGTAGATACGGGGCCCCAAGAAG
ATACGGTCCCCAAGCAGGTACCCCCCCCCCCCCCCCGCCAAAGAACCTGG
CCTATAAAGTTGAAAAATCGCAGTGCGGGAGGCCAGCAACGGAGGCTACG
AGCATGAATAGTTTCTTACTAAGAAGAATTACTGATTTACTATCCAAGCC
AAATGCTATCTAAATGCATCCAAGTTATAATTGTATACGTTTATTGCAAA
TTCATACCCGTAGGCTAATTGCAAGTTTACAACAATTATTGACACTGTGC
GAACATAAAGTGAAACATAAACCATACATGTGATACAAATGACGAAGATT
AAATTACGTTGCTAGTCTACGATACGTTATGACACTACACGCAAAGTCTC
TGCTCGTGTACTAAATGTAGGTGTGGGGATCCTGCTGTCCACACTGTCCG
TGCTGTCAGCAGAGGTGGTGGAGGTTTCCCGCCGACAGCTCGTCCACAGC
GGCCAGTCCTTTGAGCAGACAGTAGTCGGGAACCGCACCCTTCGCGCCGC
CGACCTGAACGTCGCGGTCCAGATCCCGCAGTTCGCTCTGTCTGGCATCA
GTGAAGTCTTAACCCTCGCCGTTGGTAAGTCCCTGCTACTTTCCAGTGTT
TGGAGATTATGAATTACTTTCTCTTAAGTCTTGCTTTCTAAGGGAAAGGC
TAGCAAACCCTCCCTGTAAAAATATACAATGCTACAGAAACAACAATGGC
TGCCCTAAGTGTCACGAGGTACTACATGGGCCTGAAGTTCTTAACGAACG
AAGTCTTTCTTTTCTATAGCTTTTTGTTCGTCTTCTTTTTCGCTGCATTG
ATATATTGTCTATGAATAGTTTCATCAATTCGGTGGAATAAAACACTTGG
TTGCGTACAAACTAAGAGTCTTTTCATTCCTTGATATATTTTGTTCGTAG
CTCTTGTTTTCCTTTGTACAGTCAGGTTGCTAAGGTGACTGTTTACTGTG
CACGTGCTTTTCTGATGCTGTTTTCAGTTGATTGTCGATGGCTGTGTTGT
ATAGACCATATACTAACTGCCTTGTTTTACCATGTATCTGCATGTGCATT
GGTCGTCAGGTTACTACTTTGCCTACACGGAGGCTCCGCCCGGCTACGAG
GGAACGATCATGGGAGCGTACCTGCTGATGTGGGGACTCGGCAGCGGCCT
GAACCTGCTTCTGACCGAGATAGTCAACGCCATCTGTGGTGAGGAGACGC
ACAGTTTCTACAAGATAGAGAAGAAAAAAAATCCAGCCGAAGTAGAAAAG
CCTCCAAAAAAATAAGTCAAACCCAACTAGTCTAGAAATACCCAACACAA
TTCTCTTGTTACAACAACATCAACCCTGTCAATTGTCACATGTATGCCTG
CTATGCTTTTACATTGTACTTGTAATTAGCCTTCGCGCATGAACTTGCAC
ATGAACTTTCTTTATCTATTTTCAGTTAGCGTGTCTGGCACAGCCTGCTT
CCCACTGGAGCTAAATGACGGACAAGTGGAGTATTTCTTCCTGACCCTTG
CCGGCCTCCTGATGGCGACATTTGGCATCTTTTGGTACCTCGAACGCCAT
TACGTGTACAGGTCAGAGGGCACCGCGCAGACGCAAGAAGCTACGATTCC
ACTGCTGGAGAGTAGAGACAGTAGTGGAACCGCTTACGGCACAACTGGAC
ACACGGAAAATCCCCATACATAAATCAACAAAATCATCTGCCGAGTTCTA
AATGGAATGGTTGCAAATAATTTCTACTTTCTCTTCTGTTTCAAGTTCTT
CATCCTCACAGACAGGCTAGGGCTGTATGGAGGCATACACTGATTCCGCG
ATATAAGGCATTAGTGTATGTCGCCGTACAATCGGATGTACTAGGAGGAT
GAAGTTCTTTTGACAGGGAGAACTTTCAGCAGGCAACTTTTGGGGGATTC
GTAGATTGCTTGATAAAGAAGCAAGCTGCTGTATCTGTCGCTTTTCTATT
TCCAATGGAAGTGCAATAATTCTTATCTTACATGCAGCCATGAGATATAA
AGATAAGCCATGATA Coding sequence (CDS) from alignment at Sc0000006:3043316..3049630+ >transcript:BL96515_cuf2 ID=transcript:BL96515_cuf2|Name=transcript:BL96515_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=972bp|location=Sequence derived from alignment at Sc0000006:3043316..3049630+ (Branchiostoma lanceolatum)
ATTATACATGTAGGCAAAATGGAAAGCGAAAGTGCGGCGGGGGAAGAAGA
TCACGTGGTCTCAGGTCGAAACCGCCGCGTCATGACGAGCAGCGCCCTGG
TCTGGCTGAGCGAACTGTGCGAGCGCGTGACGTATTATGGGATACTGGCC
AACATGGCGGACTACGTGACGTCACCGTGCTTCCCCAAACGGTACCACCT
GCCGTGGGTGGTCACGTGGGTGTTCACGAGTTTCGCCTACGCTCTGACAT
TCTTCGGGGGTTGGCTCGCCGATACTGTAGGCAACCGCTTCTGGACAATT
CTGGTCAGCATGTGGATATATCTTGTCGGGACAGCTCTACTCGTCGCTTC
CTCCAGTTTGTGTGGCTCGAGTCCGGACGGACGTGTGTCCGGGCTGTACT
TTGCCGGCCTGACTCTGGTTGCCATAGGAACGGGAGGCAGCAAGTCCAAC
CTGGGTCTGTTCGGCGCACAGCAGTACAAATCGTCTGGAGGGGACATAAA
AGTCAAGCTGCGACGTTTCTTCCACTGGTACTACTGGTGCATTAACCTGG
GCGCTACCATTGGCGTGGTAGGGGTGCCGTACCTACAAAAGCACGTCAGT
CTGCTGAGTGGGTACGTGGCGACGTGTGTTTTCGTCGTGCTCTCTACGGC
CGTCTTCGTCTCCGGCCGCATTGGAAACTACTACAATCAGGAAAACAGCA
CACATGAGATCCGGAGCAGAATCGTCGTTGGACTTCTTGATCCGAGCAGA
AAGACGCAACGTAGAAACCCACAAGGAAGACTGTGGAGTTCGACCATCCC
GAAGGAGGTGTGGAAACTAATGCAAATATTCGCAACACTGATCCCGTACT
ACGCCATCTACTCACAGGTGTGGGGATCCTGCTGTCCACACTGTCCGTGC
TGTCAGCAGAGGTGGTGGAGGTTTCCCGCCGACAGCTCGTCCACAGCGGC
CAGTCCTTTGAGCAGACAGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000006 | genome | Sc0000006:3043316..3049630 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96515_cuf2 |
| Biotype | protein_coding |
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