|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96559_cuf2 >transcript:BL96559_cuf2-protein ID=transcript:BL96559_cuf2-protein|Name=transcript:BL96559_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=508bp
GYCGQNGIALLDSTPFSSFRRVDKLHLGHTGCIPIDHVCDGVIDHPGILG
IHDETDCAQGLAHPCYGYHGWKCPGENTCLSVNRVCDSIPHCANGEDEKN
CDAHCESIGGWRCQCDQLTTCYLPEDICDGEETCYMYTTRTNEVTDELQC
ADDEANCEEYCRSTGGFFCTTTNECIELDRVCDGIPDCRYLVYEGFYMPH
DEEGCGNCTGVWEAMATYIAGHLADNEYDYPYANEEGVYGFTCNTGECTS
NFFFCDDRLTSFGCADLQDEQGCEDVRCLGRTCEETHKCGTFSLDTCDGV
PDCLDSTEEKNCASTSCVDTMLEFGIFKEIGVAQYCDWKEDCRTGTDESP
RKCAMFTDRLPCIRSNRFISRNHICDGMPDCVDASDEDACIGRGACILPM
PLIQEKYSIVEGIGTNTFIHSSHELTLAQWVVEGLDDWIEITLEDPVQLT
GVVVSGLRPSHTLTFSLKFGFWTDCLTSYTEGDNVKIFQTPTNGAGKGEH
FLAIAVQA Run BLAST on NCBI mRNA from alignment at Sc0000047:1652402..1656813+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96559_cuf2 ID=transcript:BL96559_cuf2|Name=transcript:BL96559_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4412bp|location=Sequence derived from alignment at Sc0000047:1652402..1656813+ (Branchiostoma lanceolatum)
AGGTTACTGTGGGCAAAATGGAATAGCCCTCCTCGACAGCACTCCCTTCA
GCAGCTTTCGACGAGTTGACAAACTGCATTTGGGTCATACTGGATGCATT
CCAATAGATCACGTGTGCGATGGAGTCATCGACCACCCCGGGATCCTCGG
CATTCATGATGAGACTGACTGTGCACAGGGTACCGTCAGAACTCGAGCTC
TTGCACGCAATATTGTTTCGAGATATATATTTATGCGTATAAAGAAAATA
TATTGCAACATATATATATATACATATCGCAATATTAAATTACATATATA
CCTGTATAGTATTTACATAAGACGCAGCGATCTTTTATCACTACTACCGC
TATGTTTTTTTCCTTCCTGTTAATGAATGGCAAATACTTGGCTTGAAGAA
ACAATGCATTGTAATCCTTTTGGCTCTTTACAAAGGACCATTGGTAAGTA
CTGAGATGCATTTTTTTTCAAATTGGTTAACATGTTTTATAACTCTTTAA
CAATGGAGTGTAAATTACTCTGATATTGCAGGGCTGGCGCACCCCTGCTA
TGGATATCACGGGTGGAAATGCCCAGGAGAGAATACCTGTTTGTCCGTGA
ACCGTGTTTGTGATTCGATACCTCATTGCGCAAATGGAGAGGACGAAAAG
AATTGTGGTTAGTATCGTTTTCTAGCATGTAGGTACTACTAGGTTCGTAA
AAACTGCACACTGTGGAAAATAATTCTGATTGCACTCTCCATTTTGTTGT
GATACAGACAAACTAATCTCAACAATTGCATAAAACACAGAGCTTACTTT
CTTAGGTGTCGAACGATCGACGTTCAGCATTCTTGTAATATATGCATGAC
ATAAGCAGATACACCATCCATGAGTCGCCACGGCAACCTGTGTGAGTCCT
TGGATCATAATAAAGTCTGTAATGTATTGTGTTGCATAAGAAAACAAAGC
AGAGGTCGGAAGACAAGGGTCGCCCAAATCGAGTAATACCTTGAGTTGGC
AATACGTTTGGTATGCGGAAATACGTAGGTATGTGGAAAGTATCTTCCTC
TTCCGACCTCTGTCTGGTTTATGTCCGGTCAGACTTAGACCACAACCAAG
ATCTAGAATCTCAAACTTTCTCACGTTTTGCCATTTGTCTTGTCAAATTA
CTTCAAACAGATGCACACTGCGAGTCCATTGGAGGATGGAGGTGTCAGTG
CGATCAGCTCACAACATGCTACCTACCAGAGGATATTTGCGATGGCGAGG
AGACATGTTACATGTACACGACAAGAACTAATGAAGTGACAGACGAATTA
CAATGTGCTGATGACGAAGCAAACTGCGGTACACTTTACATTGATAAACA
AAGAAACATGACTAAATCATTCCAGAATCTCCATTCTCTCTCTCGACGAG
GATACAAAGCAATTCTTTTCGCCTTCATTGCACATCTTTTCTTGCTGTTT
CTAATGATCAGCGTAACTGAGTTTTCTTTTGATTTGTCCTCGTCATTGCG
ATTGATGGAGGAACAAATGAGGGGTTGCCACCCCATACATGCGGTTGTTA
AAGTGATAGTTTACGCGTGTTCAGTACATACGTATACCGTCCTGCTTTAA
GACGTTTTGGCCTTCCTAGCGCCATATGTATTATAATCATTGCAGTCTCC
CCCTACATTACAGAGGAGTACTGCAGGTCTACCGGTGGCTTTTTTTGTAC
AACAACCAATGAATGCATTGAACTGGATCGTGTTTGCGATGGGATTCCTG
ACTGTAGATATTTGGTGTACGAAGGCTTCTACATGCCACATGATGAAGAG
GGTTGTGGTAAAGAAATATTGTATCTATTGGTTTTGCCCACTCAAATTCA
TAGCCATTTTCAAATTTATTACATTACTCCGTTGATGCAGTGACGTGCCT
TGTAGTTTGCCTGTACCTATTCGAAGATCCTTGATATTAATTGAATTGTT
AATCATAGCGATATTATCATTCCCTAATGACTGATAATGGTAAGAGCTCT
ACAACTCATTACAATGTTTCCGTAATATCGATACATGATTGAAAATTAAA
AATTTCACGACAGGTAACTGTACTGGGGTGTGGGAAGCCATGGCAACATA
CATTGCAGGACATCTAGCTGACAATGAATATGACTACCCATACGCAAACG
AAGAAGGTGTCTACGGCTTTACCTGCAACACAGGGGAGTGCACTTCAAAT
TTCTTCTTCTGTGATGATAGACTGACGTCATTCGGATGCGCTGACTTGCA
GGACGAGCAAGGCTGTGGTGATTTTTCGTATTCTTTTCATNTTCTTATTC
TTTTCATAAACTTTGATTACGACAATGAATCACATTTATGCTGCATGCTA
AAAATCGTCTTTCCGGGCTACAAAGAATTAACTCTATCATGGCCATAGGC
CGATCTTCACTCATGGATGAGGCCTGGTTCCTATAGATATAAGTTTTCAA
ATGCGAGTTGGCGTATGTTATTGTAAATCTACAATAGTGATGACGTATAC
GTTTTGGTCAATCAGATTAGGAGAAATCACAGGCTATTGTCTTTCCATTC
AAAGACATGATTTTCCATGTTTTTTTTTTTTGTGTGGTACCATAGTCAGC
AATCTTTGTTTAAAGTTGCATGGAATCGATTCAATCATTGACAAGCTTCT
CCTGTTCCTTTTCAGAGGATGTACGTTGCCTTGGTAGAACGTGTGAAGAA
ACCCACAAGTGCGGTACATTTTCTCTTGACACCTGTGATGGAGTACCCGA
TTGTTTGGATTCTACAGAGGAAAAGAACTGTGGTAGGTATTGATTACAAC
TACTGCTGATATCATCCTCCGCAGTACCTCGTTCGTTTTCCCTTTCATAC
TGAGCACTCAGCCTTCACAGGCATGTATTCAAGCGATGGTACACACCGAG
AACACGTAGTATTCTCTTAGAATAAATCTTCATGAACGCAGAATCAACTG
CAAATTGTTGAATTTCGTAAGAGAATGACAAAGAAAGGAGTCAAATATAA
TCCTCCCCTAATCTACCAACTTCCTCACGACCACAGAACAAACGTAGAAA
TACGCACACGCACACACTCAAATTAACACAGGAAAGAGTACGACGAAATG
GTATTTATATTCAGATTTGACCCCACTGGGTTCTGCACTTTTTTGTATTA
ATGACGCAGCATCAACCTCATGTGTGGATACGATGCTAGAATTCGGAATA
TTCAAGGAAATCGGTGTCGCTCAATATTGTGATTGGAAAGAAGACTGCAG
GACGGGCACAGACGAAAGTCCGAGGAAATGTGGTAAGCACATATATGTTT
TACGCACATCCGAATTCCTATTGGTTTTCAACCGTTCCTTGTCTGTAACA
ACCTTGAGCTAAAAGGGAAAGAACTAACTTACGAAAAAAACTAAATCACA
TTTGTGTTTGTCGGCAGCTATGTTCACAGACCGACTACCGTGCATCCGGT
CCAATCGCTTTATTTCAAGAAACCACATCTGTGACGGCATGCCGGATTGT
GTGGATGCTTCAGACGAAGATGCCTGTATTGGTAAAGCAATCTTTTAAAA
TCAGTACCGGAATAATTGCTCAGTAAAAACAACATGTGGATTGCAAAGGG
ATAGAATTTACAAATGCATGTCACAAATCTGAGCTGTATCTAATTCAATC
ATAATTCTAAGTATTCTCATCCATAAAAGTTTGCAAAGTAGCTAAACATT
CAAATAGATAATGTTTGTGTTACGGGTCTGTATCTATGGATTTGCTGGTA
ACTTGCATGTGCTACATTGCTTCAAAATCTGTAGGAATCATAATCTGCTT
TCCGTAGGAAGGGGAGCTTGTATACTACCGATGCCATTAATTCAAGAGAA
GTATTCAATCGTAGAAGGTATTGGTACAAATACGTTCATCCACAGTAGCC
ATGAGCTCACCCTGGCACAATGGGTGGTAGAGGGACTTGATGACTGGATA
GAAATAACCTTGGAAGACCCTGTGCAACTTACCGGAGTAGTTGTTTCTGG
TTTAAGACCATCACATACGCTCACATTTTCGTTGAAGTTCGGGTTTTGGA
CTGACTGTTTGACATCGTATACGGAAGGGGACAATGTAAAGGTATTTCAG
TATCAATTACATTCTCGAAGCTTTCGACTTTTTTCATCCATTTTCTAAAT
CCTTTGATTTTCTATTTTGCATTATATGTATGGGCATTATCGATAAGTAA
CAGTATGCATCATTGCACAGGAAAGATGATACTAGCGACACGTACAATCA
ATCAATCAATCAATCATCCGCAGACACAAATATGTAATATTCAGATACAA
AAAAGGGTAAATCTTAGTTAAACTCATAATGTTAAACATGTTTAGATATT
CCAAACACCTACCAATGGTGCTGGAAAAGGAGAGCATTTTCTGGCCATAG
CAGTGCAAGCCA Coding sequence (CDS) from alignment at Sc0000047:1652402..1656813+ >transcript:BL96559_cuf2 ID=transcript:BL96559_cuf2|Name=transcript:BL96559_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1524bp|location=Sequence derived from alignment at Sc0000047:1652402..1656813+ (Branchiostoma lanceolatum)
GGTTACTGTGGGCAAAATGGAATAGCCCTCCTCGACAGCACTCCCTTCAG
CAGCTTTCGACGAGTTGACAAACTGCATTTGGGTCATACTGGATGCATTC
CAATAGATCACGTGTGCGATGGAGTCATCGACCACCCCGGGATCCTCGGC
ATTCATGATGAGACTGACTGTGCACAGGGGCTGGCGCACCCCTGCTATGG
ATATCACGGGTGGAAATGCCCAGGAGAGAATACCTGTTTGTCCGTGAACC
GTGTTTGTGATTCGATACCTCATTGCGCAAATGGAGAGGACGAAAAGAAT
TGTGATGCACACTGCGAGTCCATTGGAGGATGGAGGTGTCAGTGCGATCA
GCTCACAACATGCTACCTACCAGAGGATATTTGCGATGGCGAGGAGACAT
GTTACATGTACACGACAAGAACTAATGAAGTGACAGACGAATTACAATGT
GCTGATGACGAAGCAAACTGCGAGGAGTACTGCAGGTCTACCGGTGGCTT
TTTTTGTACAACAACCAATGAATGCATTGAACTGGATCGTGTTTGCGATG
GGATTCCTGACTGTAGATATTTGGTGTACGAAGGCTTCTACATGCCACAT
GATGAAGAGGGTTGTGGTAACTGTACTGGGGTGTGGGAAGCCATGGCAAC
ATACATTGCAGGACATCTAGCTGACAATGAATATGACTACCCATACGCAA
ACGAAGAAGGTGTCTACGGCTTTACCTGCAACACAGGGGAGTGCACTTCA
AATTTCTTCTTCTGTGATGATAGACTGACGTCATTCGGATGCGCTGACTT
GCAGGACGAGCAAGGCTGTGAGGATGTACGTTGCCTTGGTAGAACGTGTG
AAGAAACCCACAAGTGCGGTACATTTTCTCTTGACACCTGTGATGGAGTA
CCCGATTGTTTGGATTCTACAGAGGAAAAGAACTGTGCATCAACCTCATG
TGTGGATACGATGCTAGAATTCGGAATATTCAAGGAAATCGGTGTCGCTC
AATATTGTGATTGGAAAGAAGACTGCAGGACGGGCACAGACGAAAGTCCG
AGGAAATGTGCTATGTTCACAGACCGACTACCGTGCATCCGGTCCAATCG
CTTTATTTCAAGAAACCACATCTGTGACGGCATGCCGGATTGTGTGGATG
CTTCAGACGAAGATGCCTGTATTGGAAGGGGAGCTTGTATACTACCGATG
CCATTAATTCAAGAGAAGTATTCAATCGTAGAAGGTATTGGTACAAATAC
GTTCATCCACAGTAGCCATGAGCTCACCCTGGCACAATGGGTGGTAGAGG
GACTTGATGACTGGATAGAAATAACCTTGGAAGACCCTGTGCAACTTACC
GGAGTAGTTGTTTCTGGTTTAAGACCATCACATACGCTCACATTTTCGTT
GAAGTTCGGGTTTTGGACTGACTGTTTGACATCGTATACGGAAGGGGACA
ATGTAAAGATATTCCAAACACCTACCAATGGTGCTGGAAAAGGAGAGCAT
TTTCTGGCCATAGCAGTGCAAGCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000047 | genome | Sc0000047:1652402..1656813 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96559_cuf2 |
| Biotype | protein_coding |
|
