transcript:BL96597_cuf19 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96597_cuf19
Unique Nametranscript:BL96597_cuf19
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96597_cuf19

>transcript:BL96597_cuf19-protein ID=transcript:BL96597_cuf19-protein|Name=transcript:BL96597_cuf19|organism=Branchiostoma lanceolatum|type=polypeptide|length=281bp
TQSGSVSDLWILGTVNVPTASTFQPVFEAVRGFSFRGDIGLDDIQVLDGP
CSSGFDVSCDFEDATVCGYTQSGTDDFDWTWQSGDTPTSNSGPTNDHTYG
TGAGHYFYVEASSPRQPGETAVLYSSLIPATPGRCLEFYYHMYGNSIGTL
NVYSNGINGPSVWSMSGDQGNVWHQAQVSVSNTAAFQLSFEGVIGTSFRG
DIAIDDVTLKGYDCSTAGNCNFENGLCTWTNNGPDDDFDWLIGRGGTNSQ
FTGPSVDHTLGTDQGLYVFVETSNPRVPGDV
Run BLAST on NCBI

mRNA from alignment at Sc0000000:3125156..3129796-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96597_cuf19 ID=transcript:BL96597_cuf19|Name=transcript:BL96597_cuf19|organism=Branchiostoma lanceolatum|type=mRNA|length=4641bp|location=Sequence derived from alignment at Sc0000000:3125156..3129796- (Branchiostoma lanceolatum)
GGACCCAGTCTGGCAGCGTAAGTGACCTCTGGATCCTGGGGACAGTGAAC
GTCCCCACCGCCTCCACCTTCCAGCCTGTGTTTGAGGCCGTCAGGGGATT
CAGTTTCCGTGGAGACATCGGTCTGGACGACATACAGGTGTTGGATGGGC
CCTGCTCATCTGGCTTTGGTAACAACTGACAAATTTTCCTTCTTCAATTT
ATGATAAAGATGGGCTTTGGGGGACATTCAATCTTCTAAGAATATTTAAA
GATATGCTGCAGACTGTATTTGTCTATTATTCAACATGACAAGCTTACCG
CAACCATCGGGAAAAAAAATTAAGAACATTGATCTGGATGACATACAGGT
GTTGGATGGACCCTGCTCATCTGGCTTTGGTAACAATTGACAAATTTTTC
TTGTTCATTTTATGAAAGAGATGGGCTATGAAGGACTAACCAGCATTCAG
GCAATCTTGTAAGAATATTTAAAGATATGCTGCAGATTGTATTTGTCTAT
AATTCAACATGGCAAGCTTAAGGCAACCATCAAGAACGAAATTAAAACAG
TCTGTGCTTCAGTGAGTGGTGGGTGAGAGTGTTAAGCAGTTTAGAACATC
AAATCAACCAACTTGCTTTCCAAGATTATTAGTTAATCACAATCAAGGAC
TTACATGTATCTATCCCGATAAAGGCGACAGTGGTTGTTGAAAATTTGAT
CCTTGAAGTTGTGTACCCTTTGTGTTGGAAGAAAGTTTAGCATTGTACTA
ACATTGTTGTTGCTGCTCTTAGATGTGTCCTGTGACTTTGAAGATGCTAC
GGTCTGCGGATACACACAGAGTGGAACAGACGACTTTGACTGGACGTGGC
AGAGTGGGGACACTCCCACCTCCAACAGTGGACCAACAAACGACCATACT
TATGGCACTGGAGCTGGTAAGGCTAGGTCTTTTTTCATGCTGCAAAAATT
AGGAAAACATTGTAACTGTAATGCTATTTGGCACATAGAAGTATGCAGTG
ATAGAAGAATCTATTTCAATTTCTTGACTTAACTTCCAAGTCTGAACAAA
ACTTTTTATATAATGATAATAAGAAGAGTAAGTACTATACTACTAATGTC
AGTCAGACTAGGACTAGGACACATACTGTGCAGACAAAGATTACAAAACA
AAAGGTGCATAAAATAATCATTCAACAGTCAAAACACACAGCTCAATAGT
TCAAGAAACAGTTCAGAGTTCAGTGTTGAGATAGTAGAAGTCTATTTTGC
TTCCAGTGGTTGCATCATATATCTCATGTACTGTATTTTAGGAGGGGGGT
GTCCTTGTGGTGTAGTGGTCTGCGCTTCTGTTACTTGCGACATCTGGTTC
AAATTACTTGGACCAGAAGGCCCGGGTTCAAGCCCCGGGTAGGACACCTC
TGGTGAAGAGGCGCATTAAGTCTTACCAAAGACTTTATAAAAATGGTACA
TACTTCTGAAACAGTATGGAAGTTAAACACACTCCACTGCCAGTGGACTA
GCCCCCTGCTGCAGTGATTGCACCACAGTGTGGCCCAGGGCTATGAAACG
GAGATGGGCACCGCCCTATACATCTTATGGTGTGGGAGGATTTTAACTTT
AACTAACTGTATTTTAGGACACTACTTTTACGTTGAGGCCTCCAGCCCCA
GACAGCCAGGGGAAACAGCAGTTCTGTACAGTAGCCTCATCCCCGCCACT
CCAGGCCGCTGCCTAGAGTTCTACTACCACATGTACGGGAACAGCATCGG
TAAGTACTTATTGACCTTCTCCCTGCTGCCTAATTCTGTAACCAATATAG
AGAATTGGGTGCCAAATGGCTACTTCAGTGCTAATTTTGATATGACATAT
ATCTGCAGAACGTTATCTTCCTTTTGAAATCATCCAACCCACTCATCATT
GAAAGCTTGGGGCTTTTTATTTTCCACTGCTTTCAAAGAATAAGTCAAAC
CCTAAGTAAAGTAGACTTCTTAGAATCTCAGTCTAATCTTAATTGTCTGT
TTCATTGGTCAATGTTTTATGATTTGCTTTATGCTTGTACTCTATCATCC
CTTGCAATTAGACTACAGGCATATGAATTATTTTGCAATTTTCAATAATC
TTGTTATAATGACAATGATAAAAGCTTTTATGTGTCGTGGTGGATGTGGC
ATTTTATTTGGTACACCTTTGAAAAATTGAAGATACGACAAAAAGTGTTC
CCCTAATCAGGGATCTCCCCAGAAATATAGAGCAGGATGGGGGGAGGGTG
CCAGGCACAGGATATGTGTGGCGAGGGGGAGGTATGGAGGGGGGCGCACA
CCTCTCAAAAGGAGAGAGACTGTTGCATTTTGCCTTTTTCAGACATAATG
GAAGTCCTTTCCTGAAATTTCTAGTTTTGAGCAAACTTACAGGCTTTGCT
GGGTAAAAATTGGAAAAAATACCCTAACTTTGAAAATGAACAGGATGGAG
CTGGGATTAGAACAGGATGGAGGAGCGCCACTGTACCATTCTTTAGGGAG
ATCCCTGCCTAATGACGAACTTAGTTACTTGGTCTTTGTACAGAGTTTAA
GCTTGTTATTCTATGATATAGCCTGACGATTCTTAATGCTCTTTCTTCCA
GGCACCCTGAATGTGTACTCCAACGGCATCAATGGTCCCAGTGTGTGGAG
CATGTCGGGTGACCAGGGTAACGTGTGGCACCAAGCTCAGGTCAGCGTCA
GCAACACTGCAGCCTTCCAAGTAAGTCCCAACTTTTCATGTACATTAAAT
CCAACATACACTGTCTATGGCTGGGATTACACACGTTTTTGAAGTTGACT
CCAAGTCAACTTGGAGTCAACTTAGACCCACTGAGTCGACCCCATATCGA
TTCAAAAACGTGTGTGTAAACCCAGGCTATGTCTATTAATATTCTCTTGA
AAAGTTCATAATTAAAGCCAAAGCTGTTGCTGTAAAATTTTGTCAAACTT
TTTCAGTCTCATCGTCATTTCAATCTACACACTTAATTTCTGATTGTGAA
ATGTTTAACTAAACTGCAATTTTAATTAGTAGATGTTAGACCTTATATCA
GATATGGGGTTATATGAAACTACTTTTAAGAGTTTTCGTGTTAGTTAAGG
TGATTGTAAGTTTTTACAGTGCATGTCTTACCATATATTCCTGTACGTTG
TAAATGTACACATATGCTGTTCTTGATATATATGTTTAGGTAGTGACACC
AGGCAGAGCTACAATAACTGTGATTGTAAAATCATAAAATATGAACGGAG
ATGTTGATAAAAAGACAAATTTTTATCCTTTACTTTCCAGCTTTCGTTTG
AAGGAGTCATTGGCACCAGCTTCCGAGGTGACATTGCTATTGATGACGTG
ACCTTGAAGGGATATGATTGTTCCACGGCCGGTAAGCTAGTGACCTTGAC
CAAATAAAAAACAATGCCATGATCTTTTCTCTTAATCATTGCAAAGCTGG
TGTGTTATAACATAAAGCGCTATGCATATTATGTACATGAATATATTAAA
CTGGAGTGTTAGACATGTAGATACACAATCTCAATGTACTATAATATTAT
TATCTGCTGCTACTGTGATACATGAACCTAAATGTGTTCGCTCAGCTATA
TTCAAATGACCCATCAGTAAAATAACCAAAAGAGCTATCTATTGTCAAAT
AGCATAACGCCAGTGATTATTTTTGGTTCATCTTGGCATTATCAATTGTG
TACAGCTGTCCCACTTTCTTTTATATGTTAACGTTTTATATCAAAGATAC
CAAAACTAATGATAAGCCCCAAGTAACACTTAGTCTATATCAAAGACTTA
GTAATTAGGAAGTTCAGTTTTATTGTTAAGTTTTATTCTATACCTCTATG
ATAGTTGTTGCCATACATTGTACCATGTACAATTGTTGTGCAATAAAGTT
CTTCTATCAAACTCCTTGCAGGCAACTGTAACTTTGAGAATGGATTGTGC
ACATGGACCAACAATGGGCCTGACGATGACTTTGACTGGCTGATAGGACG
GGGTGGAACCAACAGTCAGTTCACTGGACCATCTGTGGATCATACGCTCG
GCACAGATCAAGGTGAGGGGGAACAACAGTGTTATTTGTTATTGTGGAGA
CTTATCAATTTTTCTACAGGTGTGTAAAGAAGGTTTTCATGTTGTTTTCA
GTCATGCTGTTGCACAAAAGCACATATTCACACTGAAGAGGCACCAGGAA
AAATGCAAAAATTAAACCACCACGAATATTTCAAAATTTACAGTATTTCC
GTTGACTAGGCTCAAAGATAGCAATGTCAAGGATTGGTTTTGATTCTAGG
CTTCTAGATATCCTTCCACCCTGGAAACAATTGCCATCTAGTAGTCAGTT
AAGAGTCAAATATTATATTGACTGCACCCTGACACAAAATAAGATGTGGT
TTTGGTTAAAACAGGTTATAGTATTTTCTGAAGGAACTGCTTGCAACCTG
TTTTAGAAACTGAATAAATGGAACCCTGTTTTTAACTTGAGAGCCAAAAA
CTTTTTCTGATAGGGTGACCAGACTGGTTTTCCAATGTTGTCACTTTATA
ATGATCTGGAATGAAATAAGTTAATGTGCCTTGTTGTAGGACTTTATGTA
TTCGTGGAGACGTCCAACCCAAGAGTACCGGGTGACGTGGC

Coding sequence (CDS) from alignment at Sc0000000:3125156..3129796-

>transcript:BL96597_cuf19 ID=transcript:BL96597_cuf19|Name=transcript:BL96597_cuf19|organism=Branchiostoma lanceolatum|type=CDS|length=843bp|location=Sequence derived from alignment at Sc0000000:3125156..3129796- (Branchiostoma lanceolatum)
ACCCAGTCTGGCAGCGTAAGTGACCTCTGGATCCTGGGGACAGTGAACGT
CCCCACCGCCTCCACCTTCCAGCCTGTGTTTGAGGCCGTCAGGGGATTCA
GTTTCCGTGGAGACATCGGTCTGGACGACATACAGGTGTTGGATGGGCCC
TGCTCATCTGGCTTTGATGTGTCCTGTGACTTTGAAGATGCTACGGTCTG
CGGATACACACAGAGTGGAACAGACGACTTTGACTGGACGTGGCAGAGTG
GGGACACTCCCACCTCCAACAGTGGACCAACAAACGACCATACTTATGGC
ACTGGAGCTGGACACTACTTTTACGTTGAGGCCTCCAGCCCCAGACAGCC
AGGGGAAACAGCAGTTCTGTACAGTAGCCTCATCCCCGCCACTCCAGGCC
GCTGCCTAGAGTTCTACTACCACATGTACGGGAACAGCATCGGCACCCTG
AATGTGTACTCCAACGGCATCAATGGTCCCAGTGTGTGGAGCATGTCGGG
TGACCAGGGTAACGTGTGGCACCAAGCTCAGGTCAGCGTCAGCAACACTG
CAGCCTTCCAACTTTCGTTTGAAGGAGTCATTGGCACCAGCTTCCGAGGT
GACATTGCTATTGATGACGTGACCTTGAAGGGATATGATTGTTCCACGGC
CGGCAACTGTAACTTTGAGAATGGATTGTGCACATGGACCAACAATGGGC
CTGACGATGACTTTGACTGGCTGATAGGACGGGGTGGAACCAACAGTCAG
TTCACTGGACCATCTGTGGATCATACGCTCGGCACAGATCAAGGACTTTA
TGTATTCGTGGAGACGTCCAACCCAAGAGTACCGGGTGACGTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96597gene:BL96597Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96597_cuf19transcript:BL96597_cuf19-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96597_cuf19-E1BL96597_cuf19-E1-1564476830-12308Branchiostoma lanceolatumexon
BL96597_cuf19-E2BL96597_cuf19-E2-1564476830-12305Branchiostoma lanceolatumexon
BL96597_cuf19-E3BL96597_cuf19-E3-1564476830-12303Branchiostoma lanceolatumexon
BL96597_cuf19-E4BL96597_cuf19-E4-1564476830-12301Branchiostoma lanceolatumexon
BL96597_cuf19-E5BL96597_cuf19-E5-1564476830-12299Branchiostoma lanceolatumexon
BL96597_cuf19-E6BL96597_cuf19-E6-1564476830-12297Branchiostoma lanceolatumexon
BL96597_cuf19-E7BL96597_cuf19-E7-1564476830-12295Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:3125156..3129796 -
Properties
Property NameValue
Transcript idBL96597_cuf19
Biotypeprotein_coding