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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96688_cuf10 >transcript:BL96688_cuf10-protein ID=transcript:BL96688_cuf10-protein|Name=transcript:BL96688_cuf10|organism=Branchiostoma lanceolatum|type=polypeptide|length=537bp
MYRIKRPASXQPALSKDRATNDFIVRLRNSADSSQPVWIGLKFENTGFFF
GLTRRARWIDGELLSDGNFDDWADGEPNDEPGRDADCVRIHQTDGDNPGW
SDQWRDYPCDRETLGVICETEARPAGECSADKGVCSASGDPHYTTFDGRR
HHFQGYCKYTFAKDCGDNSVFTVETKNVPLTARPVAVVRQVYVKAYGFEI
GILQRKKVTVNGKAVSLPISVAGGNIEVHLSGRYVRVLLKDLCVEVSYDG
RHRVKVEVPDNYKDRMCGLCGNYNDNPRDDFIKADGTTAPNWTEFGNSHL
TDMSTCPGGDIGPTADAAQPECDDSLTAEVSAADKCGLLKDAGGPFAAGH
GQVDPSGAFDDCVFDMCARDGDVEGLCENLEAYADASREAGVEGFAWRSA
DRCPLECPENSAYSSCTSACPATCTTPDAPDSCSRGCVEGCECAEGFMLS
GLDCVPQEQCGCTDDGGRYYVVEESWEEDGKDCACREGNSIVCEDTDGCS
PSPCDPNAECKDVAAPDTGATCTCNDGYEGDGEADGT Run BLAST on NCBI mRNA from alignment at Sc0000005:5354884..5359517- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96688_cuf10 ID=transcript:BL96688_cuf10|Name=transcript:BL96688_cuf10|organism=Branchiostoma lanceolatum|type=mRNA|length=4634bp|location=Sequence derived from alignment at Sc0000005:5354884..5359517- (Branchiostoma lanceolatum)
AGCAGCAAGGAGTCGGGAGAGTCCAGCAGCAAGGAATCGGGAGAGAACTC
TGGAAGATCGAGCAGTTCAGTTACAGGTAACTTGTTTATGTTGTTTCTGC
CGTAGGGTAGACACTAGTCACTGCCGAAGTCGTACAGATGTTTTACCGTA
CGATCTAGGATCGGTCGTCCAACCAATCTTTATTCGTTATCCAGATCTTC
ACGCCATGTTTCCCCGACCCCCGATAGATATAGATAAAAGGCGATAGATA
TTTTAATCAGCCAACCAAAGACGCCACACACGTGCACGGGAAGTCTCAGT
TTGACTCATACAAGACTCGGCAAAGAAAAGGAGTGACAGTAACAGTGACA
GTTTAAGTAACAAGTCTGCAGTAGCGTGTTATTCCGCGCATTTTTATTCT
ATTCTGGTAAAGACCATAATGAGAACTTATGCTACGAAATACATACTATA
GCTCATCGATTTTCCGCTTCGCTCCTTGACCTGCTTTATTTCTGTCCTCC
CCGCAGGCTGCGATCCTGGCTGGAGCAACCACGGTTCCAAATGCTATAAA
GTCGCATCCGGTACATTCACATACGCGGAAGCGGAAGCCAAATGTACAGA
ATTAAACGCCCAGCCAGCNCGCAGCCGGCTCTCTCAAAAGACCGAGCGAC
CAACGACTTCATTGTGCGACTTCGGAACAGCGCCGACAGCAGCCAACCCG
TCTGGATTGGGCTGAAATTTGAAAATACAGGTTTCTTCTTCGGCCTAACA
AGAAGAGCCAGGTGGATTGATGGGGAATTACTGTCTGACGGAAACTTCGA
CGACTGGGCAGACGGTGAGCCCAACGACGAGCCGGGTCGAGACGCCGACT
GTGTCCGCATCCACCAGACCGATGGCGATAATCCCGGTTGGTCCGATCAG
TGGAGGGATTATCCCTGTGATAGGGAGACGCTTGGGGTGATCTGTGAGAC
TGAAGCACGTCCTGGTAAGTACCTCATGACACACACAAACAAAGCAAATC
ATCTATCACCAAACCTCTACAGTAAAGCCATAAAATGAAACACAGCAAAG
CATTGAAAACTTTGACTTGTCTTTCGTCTTATTGAATAGGCCAATACTTT
TCGACCTCACTAAGATATGTTTGCATGTTGTAGCACAGTTTCTAGTTCAT
TGAGTGAGACTAGCGGTATGGTTGTACAACGTCGTTTTTCACAGCTGGAG
AGTGCTCAGCAGACAAAGGAGTTTGCAGCGCATCTGGGGACCCGCACTAC
ACGACTTTTGACGGAAGGCGTCACCACTTCCAGGGTTATTGCAAATACAC
CTTCGCCAAGGACTGCGGAGACAACAGCGTCTTTACTGTGGAAACCAAAA
ACGTACCCCTAACCGCCAGGCCGGTTGCAGTTGTGCGTCAAGTGTACGTG
AAAGCATACGGCTTTGAGATCGGAATTCTTCAGCGAAAGAAAGTAACGGT
GAGGGGCGATTTTTTTTCCTCGCCCGATAGAAATTTGTAATGGTATGGCC
GGTGAAACACTCGGTATGATTCCTTACAAAAAGAGTTGAGGACGATTCAT
AGATTGCAATAATCACGTGCTGAACCTGGTCAACATATATGCATCACTTG
AAATGCGAAATGTCTAAACCGAGACCGAAATCTGAGACGCGCTGACGCAA
ATGTTTCTTCTGTGTTCGTTCTGCAAACAACTTAACATATGTGTTTTTTT
AAAAAATATTTCTCAAAGGTGAACGGAAAGGCTGTCTCGCTCCCAATCTC
TGTAGCAGGCGGCAACATCGAGGTCCACCTGAGCGGCAGGTATGTCCGGG
TGCTGCTGAAGGACTTGTGTGTGGAGGTTTCTTACGACGGGCGACACAGG
GTAAAGGTGAGCATGAATCAACCTTGCTCGCATCATAGACATAGATGTGT
TCAAAAGTTCGTATTTTCCGAGAACCATAGTAGAATGGAACTCGTTGTCA
TAAAGTACTGTAGGAGCATCTTCACTAAGTAGCTTTAAAGAACGGTTGCA
GTCAGATATGCAAAGACTCGGTGTAACAGACCGTTCGGTGTAATATAACC
AGCTGCTGTCGCGCTGCGAAGCTGGTGTGTTATAATTACGCCTACTGGCG
GTTGTACCGGCTATATAGATACAGATACAGATACAGATAGACAGTTGTCG
TACCAAGCCAAAGTAAACTAGACAGGTGACATTCGTATGCAAGAAAATAC
ACAATATCTACCTTTACATGGTCTAGCCTAGCAAACTACTGCTCTGTATA
TTCTTACTCAAACACATTTTTATATATGCTGAGATTATAGTGAGAACACT
TTCAGCTCTGTCCTACCACTTGCTACATCATGTAATCGAACACCACAGGG
TGTCTGCTACATTATCAGTAACCATGGTGACAGCCGACTGGTCCGGGTGA
ATGACCTTACTTGTTTGGAACGGAAGAAGGGGACAAAATGGAGCAAAAAC
AACATGTTCCTCTTCCGTGGAGGTAAACATAAGTGTCAAGGTCCTGATAT
ATCTAGTAGGTATCTGACGTGAAAATACTGACGTGTTTCAAAATTCTGCT
ACAGGTGGAGGTTCCAGATAACTACAAGGACAGAATGTGCGGACTGTGCG
GCAACTACAACGACAACCCGAGAGACGACTTCATCAAGGCAGACGGGACC
ACCGCCCCGAACTGGACAGAGTTCGGGAACAGCCACCTCACAGATATGTC
AACGTATGTGTTCTAGAAAATCGATATATCAATGTGTATTTATCAATGTC
CAGGTCGACGACAATATTGTAATTGAAGGGTGTGTGTTTGGTAACCCCTA
ACCCTAAACCTTGGTTCACTTACTCTTAGTCCACTTAGTTATCAGGGTGT
ATAATTCATGGCGGCGGATATCCATTGGCTAAGAGACATTCTCCAAATCA
CTGTGCATACAGACGACATGATTGTAATCGCATACTGTTTATGATAAAAG
GGCGATATATGAAGCTACCTGTGTCGGAGGGGATTTGTAACTATTGCTTC
TCAAATGCAGTGGAGGACGAAAGTAATTTCATCTGTAAGTGTTCACTTTA
CGAGGATATAAGAAACCAATTATTTACCAACGTGTCCGATACGCACCTAC
TTTCCCACTATTCCTGACCATGAGAAAATAATTCTACTATTGCAATCAAA
GAACCCACAGATTATAAAAGAAGTGAGTAAATTCGTCTTCCACTGCCTCA
ACCCAGCAAACCAAGCACTATGTACATTTTAGAATGTAGCACAATATTGG
ATGTAGCCCTTGATATCATTGTATTTTTCATTATTTCATGTTTTGTTTGT
GCTTGCAATTAGCCCTCGGGCATGATAGTTGCAATAAACTGTGAATTATG
ATTCCCCTCAGGTGTCCAGGAGGCGATATCGGCCCGACGGCTGATGCTGC
TCAGCCCGAATGTGACGACAGCCTGACCGCCGAAGTGTCGGCGGCGGACA
AGTGCGGGCTTCTCAAAGATGCCGGTGGTCCGTTCGCGGCTGGACATGGC
CAGGTGGATCCATCGGGCGCCTTTGACGACTGCGTGTTCGACATGTGCGC
ACGGGACGGAGACGTCGAGGGCCTGTGCGAGAACCTGGAGGCGTATGCGG
ACGCCTCTCGGGAGGCCGGCGTGGAAGGATTTGCTTGGAGAAGTGCAGAC
CGATGTCGTACGTTCCATTGTGATACTTGGTCCATTAATTCTTATAATGA
CTGTTATTCCAGCTTAGAAATCAACCATGGAAATTTATTTGGACAATCAA
AGTTTGATAAATCATTGCCAGATCAGACAGAATGAAACTTCTTGTTTCTT
GTCGACAGCTTTGGAGTGTCCAGAAAATAGCGCTTACTCCTCGTGCACGA
GCGCCTGTCCCGCGACCTGCACGACCCCAGACGCCCCAGACAGCTGTTCC
CGCGGCTGTGTAGAGGGCTGCGAGTGCGCTGAAGGCTTCATGCTCAGTGG
GCTGGACTGCGTACCGCAAGAGCAGTGCGGATGCACCGACGACGGAGGGC
GTTACTACGTGGTAAGCATATATTACAGGATGTGAATAAAACGACTTAGT
TATCCGTGTTCATTGTATCGGCTCCTTGATACACAACGTTGTTCCAATCG
GATGAAAGTTTCTAAAGATAAAAACCCCTTAAGAAAAATTGCAAGTGTAG
ATAGAGAATGACAAATGTGATTTTCAAGCAGGTATGTTACACCACGTCGA
ATGTGACTGTCTGCTATTGGTACTTTTGAATGTAAGATGTTGCTTTAGAA
TACTTTATCATCGCTCTTCCCTCCGTAGGTTGAAGAGAGCTGGGAGGAAG
ATGGCAAAGACTGCGCTTGCAGAGAGGGCAACAGCATTGTCTGCGAAGGT
GACACAAAATAATTCTTCGTTCATATTATAATAATAGCGCAATGGCTACC
ACGTTTACGGATACTCTTTTTTCATCTGGAATTGTTGATTTGCAGATACG
CTAGATGATTGGTTATATCATAACTTATTTGCTTTCTTTCTTTCATGTTA
ACAGACACGGACGGTTGCTCTCCCAGTCCGTGTGATCCCAATGCTGAATG
CAAAGACGTCGCCGCTCCCGACACCGGCGCGACTTGTACCTGTAACGATG
GGTATGAGGGCGATGGGGAAGCGGACGGGACCGG Coding sequence (CDS) from alignment at Sc0000005:5354884..5359517- >transcript:BL96688_cuf10 ID=transcript:BL96688_cuf10|Name=transcript:BL96688_cuf10|organism=Branchiostoma lanceolatum|type=CDS|length=1611bp|location=Sequence derived from alignment at Sc0000005:5354884..5359517- (Branchiostoma lanceolatum)
ATGTACAGAATTAAACGCCCAGCCAGCNCGCAGCCGGCTCTCTCAAAAGA
CCGAGCGACCAACGACTTCATTGTGCGACTTCGGAACAGCGCCGACAGCA
GCCAACCCGTCTGGATTGGGCTGAAATTTGAAAATACAGGTTTCTTCTTC
GGCCTAACAAGAAGAGCCAGGTGGATTGATGGGGAATTACTGTCTGACGG
AAACTTCGACGACTGGGCAGACGGTGAGCCCAACGACGAGCCGGGTCGAG
ACGCCGACTGTGTCCGCATCCACCAGACCGATGGCGATAATCCCGGTTGG
TCCGATCAGTGGAGGGATTATCCCTGTGATAGGGAGACGCTTGGGGTGAT
CTGTGAGACTGAAGCACGTCCTGCTGGAGAGTGCTCAGCAGACAAAGGAG
TTTGCAGCGCATCTGGGGACCCGCACTACACGACTTTTGACGGAAGGCGT
CACCACTTCCAGGGTTATTGCAAATACACCTTCGCCAAGGACTGCGGAGA
CAACAGCGTCTTTACTGTGGAAACCAAAAACGTACCCCTAACCGCCAGGC
CGGTTGCAGTTGTGCGTCAAGTGTACGTGAAAGCATACGGCTTTGAGATC
GGAATTCTTCAGCGAAAGAAAGTAACGGTGAACGGAAAGGCTGTCTCGCT
CCCAATCTCTGTAGCAGGCGGCAACATCGAGGTCCACCTGAGCGGCAGGT
ATGTCCGGGTGCTGCTGAAGGACTTGTGTGTGGAGGTTTCTTACGACGGG
CGACACAGGGTAAAGGTGGAGGTTCCAGATAACTACAAGGACAGAATGTG
CGGACTGTGCGGCAACTACAACGACAACCCGAGAGACGACTTCATCAAGG
CAGACGGGACCACCGCCCCGAACTGGACAGAGTTCGGGAACAGCCACCTC
ACAGATATGTCAACGTGTCCAGGAGGCGATATCGGCCCGACGGCTGATGC
TGCTCAGCCCGAATGTGACGACAGCCTGACCGCCGAAGTGTCGGCGGCGG
ACAAGTGCGGGCTTCTCAAAGATGCCGGTGGTCCGTTCGCGGCTGGACAT
GGCCAGGTGGATCCATCGGGCGCCTTTGACGACTGCGTGTTCGACATGTG
CGCACGGGACGGAGACGTCGAGGGCCTGTGCGAGAACCTGGAGGCGTATG
CGGACGCCTCTCGGGAGGCCGGCGTGGAAGGATTTGCTTGGAGAAGTGCA
GACCGATGTCCTTTGGAGTGTCCAGAAAATAGCGCTTACTCCTCGTGCAC
GAGCGCCTGTCCCGCGACCTGCACGACCCCAGACGCCCCAGACAGCTGTT
CCCGCGGCTGTGTAGAGGGCTGCGAGTGCGCTGAAGGCTTCATGCTCAGT
GGGCTGGACTGCGTACCGCAAGAGCAGTGCGGATGCACCGACGACGGAGG
GCGTTACTACGTGGTTGAAGAGAGCTGGGAGGAAGATGGCAAAGACTGCG
CTTGCAGAGAGGGCAACAGCATTGTCTGCGAAGACACGGACGGTTGCTCT
CCCAGTCCGTGTGATCCCAATGCTGAATGCAAAGACGTCGCCGCTCCCGA
CACCGGCGCGACTTGTACCTGTAACGATGGGTATGAGGGCGATGGGGAAG
CGGACGGGACC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000005 | genome | Sc0000005:5354884..5359517 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96688_cuf10 |
| Biotype | protein_coding |
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