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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96808_cuf5 >transcript:BL96808_cuf5-protein ID=transcript:BL96808_cuf5-protein|Name=transcript:BL96808_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=316bp
MRSGGNHHGGRLTRKGGGGQQHENTMARPDELSKFVEQWKQEIHGSNHKE
AAGPSGQGQDSRVPRTQVFGPLGSRWEGGGGTSKQQQQESRTLKTPPDQL
SPQPSCNQDSSNPHYPPFMLADRLLQGETTESLSEERRSQKRLKLDACPG
PVSPSRQGDPQGTRHTLLEQLISDLDEINEIPFFEVSLPRELALQIFQHL
SMEDLCRCAQVSSSWRSLADDEVLWQKVGRSLGCDFSADSASGQKSKEVV
KTHIETDRMVTGNWKSRVGQIDYLECAIGGFLSTVNSCGTHIVAGFSKGI
VRLWDILADENTPSVL Run BLAST on NCBI mRNA from alignment at Sc0000090:1003321..1011571- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96808_cuf5 ID=transcript:BL96808_cuf5|Name=transcript:BL96808_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=8251bp|location=Sequence derived from alignment at Sc0000090:1003321..1011571- (Branchiostoma lanceolatum)
AATTATCTGCGTTAGATTTTTGCAACATACATCCACTAGCTTGTTTACTT
GTCTATTCATTCATGTATTCTCGTTTTTGCCGTTATATTTCGGGTATGAA
TTTTGCCGAAAAGTTTATTTGTTTTTGTTTTGTACTGACGTCATTGAAGT
GGGGTTTTCCCTCCTGACACATGCGCAGTGGAGGTAACCATCATGGCGGC
CGCCTGACGCGAAAAGGGGGAGGGGGGCAACAACACGAGAACACCATGGC
TCGTCCTGACGAGCTCTCGAAGTTTGTTGAACAATGGAAACAGGAGATAC
ACGGCTCCAACCACAAGGAAGCAGCGGGACCAAGCGGTCAGGGCCAGGAC
TCGCGTGTACCGAGAACTCAGGTGTTTGGTCCCCTAGGCTCAAGGTGGGA
GGGGGGCGGCGGCACCTCCAAACAACAACAACAAGAAAGTAGAACTCTAA
AAACGCCTCCAGATCAACTCTCGCCGCAACCTTCGTGTAATCAGGACAGT
TCAAACCCTCATTACCCTCCGTTTATGCTGGCAGACCGGTTGTTGCAGGG
CGAGACGACAGAAAGTCTGTCAGAAGAACGGCGGAGTCAGAAGAGACTGA
AGCTTGACGCCTGCCCCGGCCCCGTCTCGCCATCGCGGCAGGGTGACCCA
CAGGGGACCCGGCACACCTTACTGGAGCAGTTGATCTCCGATCTGGTAAT
CAGCCCGCTATTATTCCGCGAGAACCCGACCGGAAAATATGTACACTCAG
GCCAGGGCGATTTTATTTGTTGGTTCTGGCATAATTATATAAAAAAAATT
GCCTTCCTGTTTGCGTAACGGTTTAACAGGGTGTTTGGCCAGAGATCTTG
GAATTCGATTCCCTTGACATGACACCGGCTTTAAATGATTTTTCTCACTC
CACCCATGTGTAAAAATGGGTACCTGAATTCGGTTGGGGAGGTAAAAGGT
GGTGGAAATGTCATACAAAAATGCTGTATACAGAATAGTCCACTCAAGTT
TGCCTTTCGTTTAGTCCTGTCCTGTTTTTACTAAAATGTCAGGAAACCAA
GGAAACAAAGTTTATCCCTATTTTGGCTTTATTTGGATTATTACAAGACA
TAGTCTCTTTTCAATGTATCCTATTGCTGAATCATCTTTATTTAAGTGTC
CGGAAACCAAGAAATACATTTGTTTTGGCCTGGGAGGTAATGTTACTACA
AAGGTGTCTGCAGCACCATCAGACAGACTGGCTGTCAGCAGGTTGTCGCG
TTGTCGGCTGGGTTAGACGGGCGATCATCAGAACGTGTTTCTGCACATAT
TAATCATGAGAAAAATGTTCAGTAATTACCGTCCTGCCATGCGACGTTTG
GCTCAAGCGATGGCACTTCTGAAGGTGATAACTTGTGAAAAGTTTCTGCT
GGGTTTGTGTTTAACCTGCATCATGCCAAGGGTGGTGCTGGGTACAACAT
TTGTGCTAGGGGAGCCAAACACTCTGCAGCTATAACATTAATAGGTTTGG
ATGCTAGCTTAAAAGTCTAGTTTACTTCTTTTAATTTCATTGAATGCAGT
AGGGGTCTCTTCATTAAAGGAGTTTTAACGGCACTTACCGGTAGATATGT
AGGGCTCAAGTGTTCCATTGATCAATCAATCATCAATCAATCAATAAACC
AATCAATCAATCAATCAGTCAGTCAACCAACCAACCCCTATGATATTAAT
CAGCTTGCTAGCCAATACATATATCTTCTTCCAACTCTTTGACATCTGAA
TGAAAAATATGAAATAGCTAGTAGCTAGTTCTGACAAGTGTCCTTGTTTC
CTTTTTTCTCTCTATAAGGATGAAATCAACGAGATCCCGTTCTTTGAGGT
CAGCCTGCCGAGGGAGCTGGCACTGCAGATCTTCCAACACCTGAGTATGG
AGGACTTATGCAGGTGTGCACAGGTGAGTTACAACACCTTGGCAGGTGTT
CAAAGGTAGAGTACAACACCTAGCACAGGTAAACTACAACACTTGGCACA
GGTAAACTACAACACTTGGCACAGGTAAACTACAACACTTGGCACAGGTA
AACTACAACACTTGGCACAGGTAAACTACAACACTTGGCACAGGTAAACT
ACAACACTTGGCACAGGTAAACTACAACACTTGGCACAGGTAAACTACAA
CACTTGGCACAGGTAAACTACAACACTTGGCACAGGTAAACTACAACACT
TGGCACAGGTAAACTACAACACTTGGCACAGGTAAACTACAACACTTGGC
ACAGGTAAACTACAACACTTGGCACAGGTAAACTACAACACTTGGCACAG
GTAAACTACAACACTTGGCACAGGTAAACTACAACACTTGGCACAGGTAA
ACTACAACACTTGGCGCAGGTAAACTACAACACTTGGCACAGGTAAACTA
CAACACTTGGCACAGGTAAACTACAACACTTAGCGCAGGTAAACTACAAC
ACTTGGCACAGGTAAACTACAACACTTGGCACATATACAGGTAAGCTACA
ACCCCTGGTCATGGGGGACTTGCTGCATGCCTCGAGCATGAAAAAAAACA
CTACATTTTCTAGATCAGAGCCCAAAACCTTTACAGTTTCAAACTCACAG
ACAAGTGTTGGGGCATCTGGGCAGCCTTGGCTGTCTTTCAACCAGCACAC
AGAAGTTCAGAATGTTATTTTGCTGTGTCAGGAAAGTTTACAGTCCCCAG
TGTACCATCACTCTCCGTCCAGTCCAGCCCAAGGCCAATGAGATAACCCT
TTTCCCACCGGGGACGCTTCGCTCGTTACCGATGCTGAGCTGTGGAGTTA
CCTCGTTAGCACGTTAGCCCGCTAATTAGCTCCTCTACAGCTATTTGATC
TAAGGCTACACCAATTCATTTCCTTGGTTCTCCCATATTTTGAAGTAACA
TTTTAGTAAGAAGACAAGATGAAAACAGATGAGAGGAAAACTTGAATCTG
ACTATATTCACTCAGCACCAAGAGGCCACGTCTAGCAATATAATAGACGT
TAAGCAAGGACAGCTGTAAGTGGGAGCGATGTTTCGGCCCTGTTCTTTTG
GAATGCTGCCAAGGAATTGGCTACAAGACTAAAGAACACACAAAGGACAC
AGCATTGTCGTACACCCGCGCACGGGAGTCGTGAAGTTGGGACACACTCT
TTCTACTGTCGCTCAGACTCCGCTCTGGCTTCAACTGTCTTCCCAACTCC
ACAACCCTGGCTTTTTGTTCTGTCTCTTCAGACAAACGGCTAGACATGGT
CTAGACACACTGCAGGACATGTTCCTGTTACTCCGATCATCAGAGGATCA
CACCTCTTTGTACTTCAGTTCATCAAAAAGTCACACATAGTTGACAATGA
TCGCACCACAATAACTAACTGATTACAGTGTTGGGAATGGAAAACAATAT
TATAAACAGATGTTGTTACAGCTTGCTCCAAATCATAACAGTTACTGCGC
ACCAATAGTATAAATCTACATCTCTATTTTGTCCACTCTTACACAGCAAC
AATGTAACAATAACATTCTCTCCCTTAAACTGTGTGTACCAAGGGACAGA
CTTTCCCCTCAGACTCTGTTTTCATGTTGATTTTCCAGTCCAGCAGTATT
TGAAAAAAATCTGAGAACCAAAAATTGAAATATTTTGGCCTGAGGAAGGG
AGCAAGACAGGAATAGGTAATACCTTAGACAGAGAAAGTGATTGGCAGTG
AAAGTGATTGGCAGTGAAAGTGAATGGTCATGACACCTGTTTAAGTGGGA
CTGTAGGTTTCATCAGTCGGACTGATTGTCCAGGTGAAAAGAGAAAACAC
TGATTACCTGAGATTACCTGAGATTACCTGGGCTGTAAAGACTGGTACAA
TCAGGCTTCACAGGTAAAGACTGCAAGGGCCACACTGTGTAACTGTGAGG
CTTAATTGTTAGTTTTGTAGTTGTTTAAGGCTGTTAAAAGTCTAATTCAA
GCCTGGCTTTGTTAATCTAGATTGGAAGACAGCAAGCCACATTGTCAGCT
ACTGATAACTGATTAGTGGCTGACACCCTGTGTAGGGACATGGGGGGGGG
GGGATGTACCGTTTTGTAGGTTATAGTATGGGGTCCTTATATCTGGCTCA
ACTCCCAACTAGTTAGACAGACTAGAAGTCTTCACTTGTGTTTTAACCAA
AGAAAAAAAAACTTTTTATGCATTTTTATTACAGCAGTTTACTGGCTATA
CAGAATTAGATGACAAGCTTTAAGGTTCACGGATTAAAAAGATATGCTAA
AAGATCAACATGAAAACAGAGTCTGAGGAGAACGTCTGTACCTTGGTACA
CACACGTTGATGGGAGTGAATGTGGTCAGATTCAAGCTTTCCTCCCAGCC
CTCTGTTTCCTCTTCTTCTTTCATCCTCAAATCATGCATTTTGTTTTAAG
TTTGTTGCGATCTTTTATGTGCAGAGGTTTGACGCTTATGTGTGAAGCTC
CCTCATTCACGAGGCCGCTGCCTTAACGCCACCATCCAAGACGATATGTC
CAACCTAGGGCCGATTCTGGAATCAAACCTCCGCCCATAGTCAAAGCCAA
AGTCAAAAGTCAAAGCAACCACTTATCCACAGGGACTACATTTTTACTTT
ACATTTTCCTAGAAACCAGGAAATCAGTCGGTGTGACTTGAAGTCTCTGT
GTACTTCTCTCAGGTGAGTTCCAGTTGGAGGAGTCTGGCGGATGACGAGG
TTTTATGGCAGAAGGTGGGGCGGAGTCTTGGCTGTGACTTCAGCGCAGAC
AGCGCATCGGGACAGAAGAGCAAGGAGGTCGTCAAGACGCACATCGAGAC
AGACAGGATGGTGACTGGGAACTGGAAGGTGAACTAACTTAGTCAGGATG
CTGTTGCATGGAATTTTGTCTGTGGGACTGGATGGGTTGCAAAGCAGTAT
GCAGGACATTCATTTTGAGGAGTAGGTGCACTGGTGGACCTAATATAGCA
ATTTAGGTGCACAGAAAGTAATTTGAAAAAGATTAAACTATTTTGGGCAC
TTGAATGTCTGAAGAATGTGTTCTATGCTAGTGTACAGTATTAGTACCTT
TACGTATGTAACTCTACACAAATATCTTGGTGTGATAGTCCCACAGTCAA
AAATCAAAAAGTTATCAACGTGAAAAAAGTGCACATGCACCCAGTATTTC
CAGGGTATGGGTAAGGGGGCGAAGTTTGCCAGCATTGGTTACGTACCGTA
GTTTTCAGCATTAGTATGAACATTTCCCTCGTGTGGAGACTATCAAAAAC
TATTTCCTCCTCTCCCAGAGCCGTGTTGGGCAGATCGACTATCTGGAGTG
CGCCATCGGGGGGTTCCTCTCCACCGTCAACTCCTGTGGAACGCACATCG
TGGCAGGGTAAGGGCGGGGCCGTCACCATGGCAACCTCATGCTTGTTTTA
ATCCCAGTCGTATACATATAAGCAATTCGATTTGTTGCTTATCTCTCTCT
CTCTCTCTATCTATCCAGTTTTACGTCTTTTGTTCCCCATCATCTGGGGG
TTAGACGTGCTTACACATGGATGGGGGAGCCCAGAACTCTTCATCAAGTG
CAAGTCTTTTTTGTAGGAAGAGTTTTTACGGCTGGATGCCCTTCCTAACG
CCAACCCAAACCCTATTGCTGGGCTTAGGATATGGGAAATACGTGTTAAG
TGCCTTTCCCAAGTGCACAACGTCTGGGTGCATGTCCGGACATGTCTGGG
TACTCCACTGGGGATTGAACCTGGGTCTTATTGGTTCATAGCCGGATGCT
CGGCCACTGTGCCACACAGACGACACTCTGTCTCTATCAGATCATTTTTT
ACTTGTTTTGTTAATTGTCTTCCCGGTGAGGTTTTTGATGCCTTTTTTGA
GAACTCATTCCATCTATCCCTTAGTCTAACTAAATTTATTTGACTATTGG
GGCACTACAAACAATCCAGTAGCCAGTTTTCTCCACCCTTTTTTTGTTTT
TTGTTTTGGGGACCAAAGAAAATAATGTTAACGTTATAGTTCTGTTCCCT
CAAACTTGATGTGATACAGTAAACCGACTTGGCTGTGCCTTGGTCGTGAT
GTTAACATCTGTGCTGCGGTGTAAGAAACTTGCGGTGACTCCTTAAGAGC
AAGATTAACTCCACACACCAGCCTTAATGTTCCTCAGGTCCCTGTACAGG
ACAGGTGATTGCAAGTGACACAGCCTCGGGACAATTTGGCACTTAAGGAT
AATCTGGTGATCAAGACATAAAGCCTGTCCAGTCCAAGATGTCTCAGAAG
TGTCACAGGTTTACTGTCTCAAGATCGTGTCGTCTTAGAGCTTCCTTGTG
GGAGACCTCTATTGGAATAGAAAGGCTTTTGCGCTCCAAACCCTGACATG
ACAGAGAAATGTAGCTGTGGTATTTTCAGAACTCAGTGATGAATAGGTCT
GACATACTGTACTGTATGGAGAGAAGGCTGGAAAGCTAACCACTGTAAAT
CTACAACATGTTCTGTAAATCATAGAATATTCTATTATTTTTCAAGTTCA
CAGTTTTCCTAGTCACTTTTTTGTCACACCTCCAAATAAAAGCTAATTAT
AAATAATATTTAAGCTTACTGACTCTTTTCATGATAAGAGCCTGAATCTG
AAATTCTATAGCTTCAAAATCTTAAGCAAGTATTACATAGCTTTTCTGAC
AAGAATATGCTGTATCTGTACAAGTCATGTACTAACTAGTGTACAATATT
ACCTGTACGTATGTAGCTCTGTAAAAATATCTAGGTGCACTGGTGCACCC
CCTGTCAAAAGTTAGGTGCACAGCTCCAGTTTTGGGTGCACGAAAGTGCA
TTATGCACCCAGTATTTTGAACCTTCAATGTGATGTAAGGAGAGTTCTAT
TGGGGAGAAGTTTGTGCTCTCCCTGAGTAGTCAAGTTTTCCTCCTCATTT
TGTGGCGGATTAAGCATCATCTTGGGATTAAGGATTAGCACAGATCAGGT
AAATCCCTGCTGCAGGATGGATCAAGCTGACACCACAGACTCTGTCACAC
CCTGGGATGGCTTATCGATATCGTAAAAGTCTCAGCTTTTGGGGCCTCCT
CGAGTCATGCTGACACACAGTTTGACAAGGTTTATTGAGCTTTGGTCTTT
AACATGAATGAAGTTTATGATGACAAGCTATCTACCATCCAAAACTCAAC
AAGAGCATTTTCATAACATGAAATGAAAAGCAACTAAACTGGATCAGGAT
CCATTCCCAATCCTCAGCAGAGATGACATTCCCAACATGTAATTGCCAAA
GACACGTCTTAATCCGTTCCTTAGCGGCAGGCTTTACGTCTAATCCTTCC
CCCAAAGTCTCCCCCCTCCCCAGTACCCCCAGGACAAACTCTGATCCGTG
GTTATTGATTACTGGGGTTTGTTGTCTGTCGTGCAATAAAATTGTTAGTG
TTTTTGACAGTCGGATAATCTCATCGGCTTGTGGGATCCTCTTGCATTAG
GCTATGTCAAGTCAATCACTTGTTTCTTGTTTATGTTTTGAAACTTTTGT
TCGAAACTTTTGTTATCTGTAATTATTGTTAATACAAATGTAATTGTCAT
TTCAAAGTTAAGGCCACACCAATTCATTTACTTGTTTCTTGGACATTTTA
AGATAAAAGTGATTCAGAAGCAATCAGCCTACATGAAAGCAGAGAGCTGG
GAAGAAAAGTTCAATATGACAACTGTAAATGGATCTAAATTTATGATGAT
TTAATTTCGTGGTAGAAACAATGGGGTAGGCAGGCTTTATGTCCTATCCA
AGAGAACATCCCTAACCAAATCTTGAAAGCTTGGTACTTGTGTCGAGTGT
GGAAATATCTGTAAGGTAAGGCCACACCAATTTAATTTCTTGGTTAACGG
AATCTTTAAAAAGTGCTAGATTGGAAAATCAACATGAAAACAGAATCTCA
GAGGAAAGTCTGTACTTTGGTGCACACAGTTTCAGGAAGTGAACAGGGTC
AGGTGCAAGTTTTATCCCAGCCTTCTGTTTTAATGATATCCTTGTGCTAA
TTAAGATTTTACCCAAAAATTCTGTTAACCAAGAAATTGAATTGGTGTAG
CCTAAAGGATAAAAAATTTTGGGCCTGATTTGAACCCAGAGCCTTTAGCT
TCTTCACCAACAACCCTCACCACAAGACCACTTTGCAGGGAAGATGACCT
TGTCTCCTACTGTAATCCGATCCTTGTATTTCTCAGGTTCTCTAAAGGCA
TAGTCCGGCTCTGGGACATCCTGGCAGATGAGAACACGCCCAGCGTGCTG
T Coding sequence (CDS) from alignment at Sc0000090:1003321..1011571- >transcript:BL96808_cuf5 ID=transcript:BL96808_cuf5|Name=transcript:BL96808_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=948bp|location=Sequence derived from alignment at Sc0000090:1003321..1011571- (Branchiostoma lanceolatum)
ATGCGCAGTGGAGGTAACCATCATGGCGGCCGCCTGACGCGAAAAGGGGG
AGGGGGGCAACAACACGAGAACACCATGGCTCGTCCTGACGAGCTCTCGA
AGTTTGTTGAACAATGGAAACAGGAGATACACGGCTCCAACCACAAGGAA
GCAGCGGGACCAAGCGGTCAGGGCCAGGACTCGCGTGTACCGAGAACTCA
GGTGTTTGGTCCCCTAGGCTCAAGGTGGGAGGGGGGCGGCGGCACCTCCA
AACAACAACAACAAGAAAGTAGAACTCTAAAAACGCCTCCAGATCAACTC
TCGCCGCAACCTTCGTGTAATCAGGACAGTTCAAACCCTCATTACCCTCC
GTTTATGCTGGCAGACCGGTTGTTGCAGGGCGAGACGACAGAAAGTCTGT
CAGAAGAACGGCGGAGTCAGAAGAGACTGAAGCTTGACGCCTGCCCCGGC
CCCGTCTCGCCATCGCGGCAGGGTGACCCACAGGGGACCCGGCACACCTT
ACTGGAGCAGTTGATCTCCGATCTGGATGAAATCAACGAGATCCCGTTCT
TTGAGGTCAGCCTGCCGAGGGAGCTGGCACTGCAGATCTTCCAACACCTG
AGTATGGAGGACTTATGCAGGTGTGCACAGGTGAGTTCCAGTTGGAGGAG
TCTGGCGGATGACGAGGTTTTATGGCAGAAGGTGGGGCGGAGTCTTGGCT
GTGACTTCAGCGCAGACAGCGCATCGGGACAGAAGAGCAAGGAGGTCGTC
AAGACGCACATCGAGACAGACAGGATGGTGACTGGGAACTGGAAGAGCCG
TGTTGGGCAGATCGACTATCTGGAGTGCGCCATCGGGGGGTTCCTCTCCA
CCGTCAACTCCTGTGGAACGCACATCGTGGCAGGGTTCTCTAAAGGCATA
GTCCGGCTCTGGGACATCCTGGCAGATGAGAACACGCCCAGCGTGCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000090 | genome | Sc0000090:1003321..1011571 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96808_cuf5 |
| Biotype | protein_coding |
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