transcript:BL96901_cuf5 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96901_cuf5
Unique Nametranscript:BL96901_cuf5
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96901_cuf5

>transcript:BL96901_cuf5-protein ID=transcript:BL96901_cuf5-protein|Name=transcript:BL96901_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=1111bp
RIGTTANPNHYRSRGLEDYTNLRVQLVFDSTLNLDPLLGNDLTLRDTIRA
QIRNNLVTAGVRPAVLATLGDIWMERNVIPFTISKTADDLISLLDEAGQL
DKLIAANSAIFNIDGATWRPVGMVVNGSFDILCPQQCQDGADRDSCTLIP
GCDWADYDNPVTCLEDAYLVEHMNMSAYFPCLFVPVHLNGTTQMQQDYAN
SFLRSLRAALQDRGFVVPEKVIHAVQVGRDTIDFRIQRTMEYQNLTGLHS
AIQDILSWDQQFTFNGFRSANPDDEFNNTVKFEISFEDQNNMDINFDDIL
DSNFTIRDVLEQDIIDFVHTTLGHSSVASLILDNIWIQSNYCTFSISVPL
DQVDAIGAEAMKLVSNIGNFIIHVGSFQVKAVEYKSTESCDFCPPDCEPR
DELACYQHTTCEWCVFEGAPHCDADCLLQEETKEELSVFFPCLPEVIDDQ
TEQQIKDSFRDEVLQLLRAKFGGFNTTKNIVNITITNRTVSFSLKSSMLQ
RITPDVISFLRNISNWSDVTIRYMGNEYPVWEPTDYTDIKFFLRFAPTYN
FTEMLSRSPDQRRTLEDAVRTMASNSNLPPELASTVANIWAEGHVIPFTI
NKDPARKDTDMAVIAEAFARSMVNVDISGTPVRSSDISYELGFYSICQYN
CSTIPSQDECVAVPSCGWCTLNEGPGCGDDCYLVEWVSHFAFIPCEQTRD
LSPAQRQQLVDQFRQEVADIMNSTTKFIRNVAINDSGIYFELQATMQDRF
LPDYESKIRDAFELAANFTVGDVINPDLFRTRNPEDFTDMVVTMVFNGVN
FANLVGQHSVSESVLHPALKTALTNAGVSSQYVTSSRVLQRGQDYIEFSI
SKDFDSSDNLTVEVEKLVAAQNRILLNLTPGWPVSSDVIYRGTFDSICVP
TPPQALSTATPSTTTSQGAASSLGSTTGPSHGATANTATTVSVGTGANPL
ISPSTGTSTGTGTPSGACWCCPVIPAGVVDSPEYDPVAATGGLSSTDKVG
MGVGIPVALAALAGLGALLMFFLKRKPDRPPTPIRRNVVAPAVESFETNI
YSASMDDELSYQFGKKGAELHRFRDPDAVYGRLSTASWSPYPSSASSSST
MESSLSTPDVY
Run BLAST on NCBI

mRNA from alignment at Sc0000023:1873627..1890126-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96901_cuf5 ID=transcript:BL96901_cuf5|Name=transcript:BL96901_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=16500bp|location=Sequence derived from alignment at Sc0000023:1873627..1890126- (Branchiostoma lanceolatum)
TCCGTATAGGCACCACAGCCAATCCAAACCACTACAGGTCACGTGGTCTA GAGGACTACACAAAGTAAGTAGATGTCTTATGTTGATAGAGATATGATCG CAGTTCATATCATAACTCAAATTATATTATAGTAATAGTACTAAACTACG CACAAAAAGTTCGGAAACTTAACTTTGGTTGATCATATCTCCGTTGTTTT TTTACCAATTTTGATGCATTATATATCATTATAAAGCTTGTGTGATTCCC TGTTCTATGATACCAAACTTATTGTGATTGAAAACCCATGGAACAAGTAC CAGGACTAATAACGTGAGTTGGTCACGGAGAAAAAGTGCCCGAAATTCCC TGTTGGTGTCATACGCGCGCTGTGACATCCTATCGGTATGGGCGCGGATG ATGATTCAATATATTGTTTCCTCAGGTTCTAAGGTTATTTTTAGAACACA GACCATCCAAGGTTATTTCTAGCACACAGAACATCCAAGGTTATTTTTAG CACATCGAAGAACCAATTGTTTACACCACATAAACACCTGCGTCCTGCAA CGGTATCGTCATCCACAGGTGTTATTTTTTGTTATTGTTTCACAACAAAC ATTGGGGTATGGGGAGGCATAAACTCCAGGGGAAAGACAAGACTTGTACC AGGAACCCTCAATGCAGAAAGATATCGTGACACAATACTTGATCCGGTGG CCATCCCTTTCCTCCATAACATGGGGCCGAATGCCTTGCTGCAAGATGAT AACGCCCGCCCACACCGGGCAGGGATCATCGCCGACCATCTCCAGCATGC AGGTGTAGAGAGGATGGAGTGGCCCTCTAAGAGCCCGGACCTGAACCCCA TCGAACATCTATGGGAGCAGCTTGGGCGAGCTGTCCGTGCAAGACACGGT GGCTGACCTAGGACGACTGCTGGTGGAGGAATGGGACGCTATCCCACAGC ATCGCATTGCGCGACTGGTGACGAGTATGAGGAGTAGGTGCCGTGCTGTA GTGACAGCGCGTGGCTGGATCACCCGTTACTAAGACTCCTTGCTAACCCG TTACTAAGACACAGATTGTTGGTTTTGATAAAGAATAAACTTAGCTTTCA TGAATATGTCTTGTTTATTCTTGTTGATTTTTCACAATACTCTCGTACAG AAGTCAATATCAACAGAAGAATATGTACGGAATAGCATGTTTGACTATAG TAAGGTAATCTGGGCACTTTATTTCTTCGACCCACTCACTTTAGCAGGCC TGATGCTCGTTTCATGAACTTGCAATCACAATAAGTTTGGTATCATGGGA AAGGAAATCAAATAGGCTTTTAAACGATATGTAATATATTGAAATCGGTA AAAAAATAACGGAAATATGATCGACCAAAGTTAAGTTTCCGAACTTTTTG TGCGTAGTTTATATACGTAGTCCATATTGATTCAGTTATTGGTGTGAAGT GTCAGCTACTGTAAAGTTATATAGTTTTGAGCCATTGTCTGATCAGCTCA CTCAATTCCTGAGGTATTTCCAGTACACAATGAACTGCCATGTAGTTTTA CCATTTAAATCGGTAGAGTGATGAGGCTAAAGGCCGTAGACATTCGCTTT AGCCGTGTTTGAGTAGGTTAAGGAAATGATAGCAATGCAAATGCATAGTA TTTGACCTTATGTTGATGACATCTTCTTCCAGCTTGCGTGTTCAGCTTGT ATTTGACTCGACGCTGAATTTGGATCCGTTGCTTGGTAACGACCTGACGC TACGAGACACGATCCGCGCCCAAATAAGGAACAACCTTGTAACCGCGGGG GTCCGACCAGCCGTCCTGGCAACACTTGGAGACATCTGGATGGAAAGGGT GAAGTTCCATTTGACTGTCATTGTTGAATTCTACCATCATTTAAACGTTT GCTTTTTCATGCATTTCAATTTGTGTTCACGGACGATCAGGATGATTTGT CGTAAAATACACATTTAAAGCCTTAATATTACTCTGCTTGTGCACTAAGC AATGTTACGAGTCGGAAAGATGCAAAACGGCGCCAGCCGGAGCTCTGTCT TCTTCTGAAAAGACAACTTCTTCTTCTGTTTGTTTGTTTGTTTGTTTGTT TGACCGGTGTAACAACCTTTTGCGGTCAGTTTTAACCTAATGTGAGCAGT TATGGCTATTTTGGAACAACCAGGCAACGTAGTCCGCATCGTTTGATGGT CTTTGTTGCAAGTAATACGTTCTTAAAACAATCTACAGCTTTGAACCATG GAGGTTATATATCTGAAATTGAGCTTTTTTGTTGTTGTTCCATTCGTGTA CAGAACGTCATTCCCTTTACAATAAGTAAGACTGCTGACGACCTCATTAG TCTCCTCGATGAAGCAGGCCAGTTGGACAAGCTGATCGCCGCAAACTCCG CCATCTTCAACATCGACGGCGCTACATGGCGGCCTGTGGGCATGGTCGTC AACGGGTCGTTCGACATTTTGTGTCCACAACAGTGTCAGGACGGGTAAGA ATCGCACAAATAATTCGCAATGTTCCATCTCTTAAAATGGTATCGTACAA AATTTCTTTAGTGCTCAAAAGTAAAACAAATAACAGTAAACACAGTGCAG CTCAATGTCTAGATTGACACCGAATATTTTATTGTTAGTACATGTCCACT GGGTTTACCTTGATCTGAGCCTACATGTATTCTATGAGTCTGAAAAGCTC AAGTTGAAATCCAATACAATGGGACTTTCCTCAATTGTACAACAATGGGC CTTGTCGAGGAATGATAGGAGTTTCTCTAGCTGTGTTCAAAACTCAGTCT TGTAAAAAGCATGGCAAAAATATTCACATTGTTGACCACTGCGTCTTACA TTGATTTCTTGTAATGTCAGCTTCAAAACATCGATTACTCATTTACTATT AGTGCTGATCGTGACTCCTGTACCCTGATCCCTGGATGTGATTGGGCAGA CTATGACAACCCGGTCACGTGCCTGGAGGACGCCTACTTGGTGGAACAGT AAGTGATAGGCTGTCGCTATCGACTTGTTTATTTTCTAAGTCGTTGAGTG CCTATGTTCTGATATGTTGAGAAAATCCCTTAACCACAGATGTCGCATCG TTAACCGTCTAGTAATTTGTCTATTGGATAAAATATAAACCAGAACAATC TACTTGTTGTGTCAATAAATCTTCTGCATATGATATACTATAAGTGAGAA AGACAGAAAGAAGAAGTGTGTTTGTGTGTGTTTTTGTGTGTGTTTGTGTG AGTGTGTGTGTGTTATGTAAGAAAGAGAGAGAGAGAGAGGGGGGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTGCAATTTTCACT GTTAATTCCTTACCCAAACATGTTTTTCCTTTTTCTTGCAGCATGAACAT GTCAGCGTACTTCCCATGCCTGTTCGTTCCCGTCCATCTAAACGGTACAA CCCAGATGCAACAGGATTATGCTAACAGTTTCCTCCGTTCTTTGCGCGCC GCTCTCCAAGACAGGGGCTTCGTGGTACCAGAGAAAGTCATTCACGCCGT CCAAGTTGGAAGAGTAATTTTCCCTCTAATTTTGTCAAACCTTATGAAGT ATGTTAGGTTATATCCTTTGGTGTATAGGGGCGATGCCAGTCTCCGATTC CAAGGCAAGAAAAACACACACGACCAACTAGGACATTGTACCGGCCACGT ATTGAACTTTACGTCATTGCAATTATAACCCGGAGTGCACATAACCACGT CTAAGGCTAGACAAGGAACTCCTTATAATGCAAAATAATCTTGCCCCCTA TAAGAAAGACATGGGTCATGCAGATGTTTCGGAAGAATACATTTTTGTTT CGCTATCGAGGTTTGCAATTGCTCTTTTATGAATTGTGTAACTATTGTTC TACTCTGGAGGGGACTTTTCAAAACAGGGAAAATATTTTGAAGAAAACGT GATTTAGACTTTTCAAAACAGGAAAAAAATGATTTGAAGAAAACTAATTC AGTAATCTTTAACAAAAACCCATAAGTGCCCATTCTTGTTTTGTGGAATG TTCAACTTTCTGAATTTACAAAAAAAATCGTATCAATAAAATTCGTAAAC GCCATTCACAATAACAATACTCATTTTACCATCATTAAATCTTGTTTATC ACAATCTTTTAAAAATCCGTTCGATCCTGATCCCAGGACACCATCGACTT TAGGATCCAGAGGACGATGGAATACCAGAACCTGACCGGCCTGCACAGCG CCATTCAAGATATCCTATCATGGGACCAACAATTCACCTTCAATGGCTTC AGATCGGCAAATCCGGACGACGAGTTCAACAACACGTAAGCATACGGCTA GTTCCTGAACCTTTGAGCTAAATTTTATATTTCTCTGTAGTTGTTTGCCT TTGATAATAGGAAATTTAAGACAGATATATTTAAAGATCTGTCACTTTTA ATGAGAAAAGATCAAATCAACGGATTTAAGGTTTGGGTGTTTGACTCATA ATCTAGAGTTTAAATTCCCAATACATTACAAACAGGTCCCTTTCATTTCG AAAGTTTGAAAAATGAGAACCTAGATTCGGTTAACGATGTCCTACCATCT GAGAGGTTATTCGATGGAAACGGTCTTCTAGTTCATGATATATACTGCGT TTAGCACAATGCTGTTCTCGTCTGCAAAATAACGTAAGATGACCAANNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGCTGCAATTTTCACTGTTAATTCC TTACCCAAACATGTTTTTCCTTTTTCTTGCAGCATGAACATGTCAGCGTA CTTCCCATGCCTGTTCGTTCCCGTCCATCTAAACGGTACAACCCAGATGC AACAGGATTATGCTAACAGTTTCCTCCGTTCTTTGCGCGCCGCTCTCCAA GACAGGGGCTTCGTGGTACCAGAGAAAGTCATTCACGCCGTCCAAGTTGG AAGAGTAATTTTCCCTCTAATTTTGTCAAACCTTATGAAGTATGTTAGGT TATATCCTTTGGTGTATAGGGGCGATGCCAGTCTCCGATTCCAAGGCAAG AAAAACACACACGACCAACTAGGACATTGTACCGGCCACGTATTGAACTT TACGTCATTGCAATTATAACCCGGAGTGCACATAACCACGTCTAAGGCTA GACAAGGAACTCCTTATAATGCCAAATAATCTTGCCCCCTATAAGAAAGA CATGGGTCATGCAGATGTTTCGGAAGAATACATTTTTGTTTCGCTATCGA GGTTTGCAATTGCTCTTTTATGAATTGTGTAACTATTGTTCTACTCTGGA GGGGACTTTTCAAAACAGGGAAAATATTTTGAAGAAAACGTGATTTAGAC TTTTCAAAACAGGAAAAAAATGATTTGAAGAAAACTAATTCAGTAATCTT TAACAAAAACCCATAAGTGCCCATTCTTGTTTTGTGGAATGTTCAACTTT CTGAATTTACAAAAAAAATCGTATCAATAAAATTCGTAAACGCCATTCAC AATAACAATACTCATTTTACCATCATTAAATCTTGTTTATCACAATCTTT TAAAAATCCGTTCGATCCTGATCCCAGGACACCATCGACTTTAGGATCCA GAGGACGATGGAATACCAGAACCTGACCGGCCTGCACAGCGCCATTCAAG ATATCCTATCATGGGACCAACAATTCACCTTCAATGGCTTCAGATCGGCA AATCCGGACGACGAGTTCAACAACACGTAAGCATACGGCTAGTTCCTGAA CCTTTGAGCTAAATTTTATATTTCTCTGTAGTTGTTTGCCTTTGATAATA GGAAATTTAAGACAGATATATTTAAAGATCTGTCACTTTTAATGAGAAAA GATCAAATCAACGGATTTAAGGTTTGGGTGTTTGACTCATAATCTAGAGT TTAAATTCCCAATACATTACAAACAGGTCCCTTTCATTTCGAAAGTTTGA AAAATGAGAACCTAGATTCGGTTAACGATGTCCTACCATCTGAGAGGTTA TTCGATGGAAACGGTCTTCTAGTTCATGATATATACTGCGTTTAGCACAA TGCTGTTCTCGTCTGCAAAATAACGTAAGATGACCAACAGTAACTAATTG TAATGTCTAATTGAACCGACTGATCTTTAAAAACATTATACACGACTTTG TTACAGTGTCAAGTTTGAGATCAGCTTTGAAGACCAGAACAATATGGATA TAAATTTCGACGACATTCTGGATTCGAACTTTACTATTCGTGACGTCTTG GAGCAGGACATCATCGATTTCGTCCACACAACGCTCGGGCATTCGTCTGT CGCCAGCTTAATCTTGGACAACATATGGATACAGAGTGTATGTATCGTAT TGTTGTAGTGATACTACGTACCGGTGTGACATAATTGTAAAATGACTTAC GGATTGTAAACAATGCTGTACTTTTAAGCACTAAAATAATGCTTGATGAC TCTTTTTGAACGTTTTACTAGAATATGACTACTGTTTTTTCCCTTTACTG TCAACTTAATAGAACTTTCATTAAGTTATTGAAACTAAATATGACGTAGA TGGTATACTAGAAATCAATTCTAGCCGGTTGGTCCCACATATGTTGTCGG TGAGATGTAGCAGCATGGAGTATGTCGTTGTCTTTACAGAACTACTGCAC CTTCAGCATTAGCGTCCCGCTAGACCAGGTGGATGCAATAGGAGCAGAGG CCATGAAGCTCGTGAGCAACATCGGGAACTTCATCATCCACGTGGGAAGT TTTCAAGTTAAAGCAGTGGAGTACAAGAGCACCGAAAGTTGTGACTTCTG TCCCCCTGACTGTGAACCGAGGTAAGAAGTCAATTGAAGCTGTGTCAATG AGACCTGTCTTTTTATCCTTAATAAGTAGCTTAAGCCCACCGCCGTATTT GTGGCTTTTTCTCAGCCTGGGTACCATCCTCCGTGGTAACCGCTGGCTAA ATCTTTTCGCTTTCTAACTCTGGTTAGTACCCTTGCTTACTTTTTTCAGG GTTGCTAGAATGGCTTTTCGTGTTTCATTATTTTGTCTTCAATTATGAAA TACCAACTTCCATCTACCTCTTGAATCTAAGAGATGAGCTGGCCTGCTAT CAACACACCACCTGCGAATGGTGTGTGTTTGAAGGTGCACCACACTGCGA TGCCGACTGTTTGCTGCAAGAGGAAACGTAAGTGTGCTCTTTAAGACCAT AAACTTATAAAGGTGAAGTATTTTGAAGCTTTCTGCATTAGTATTCAATA TTAAAGCTTCAAAAAGAGGGGCAACATGCAAGCTTATCATTTTAAAGCTT TATCTGCACTACCATACCCTTATTCAAAGAGTAGCACCATTTCATAGTCA GAACACACCCAAGCTAAGGTGTATGTTACTTCTCCAAAAATGATAGCAAT ACCTCAAAGATATCAATGTCAATGACAAAAAAATCTGTATGCCAATCTTA CAAGTAACTTATTAGTTACCAGACTGAATGTATAATACAACGACAGTGGT TCTGTAAGCAATGACATCTCCATGCTTCATCTCTTTCACATCCAGGAAAG AGGAGTTGAGCGTGTTTTTCCCCTGCCTACCTGAGGTTATCGACGATCAG ACAGAACAGCAAATAAAGGACAGTTTCCGGGATGAAGTTCTTCAGCTTCT GAGAGCTAAATTTGGCGGCTTTAACACCACCAAGAACATCGTTAACATCA CCATCACAAATGTGAGTCTTCGCCAGGCTTACCAAAGGACCTAAAAGAAT TTCACCATTAGATGCATAAAGGTAATACTTACAAGTTAGAATGATGAATT GTATACGTCGATGTACTCACCCAATCGCTCAACGCGGAACCCAATATACC CTAATAAAGTAAACACTTACTTGATTCCACTGTTGATGTCTCTACTACAG CGTACCGTCTCGTTCTCCTTGAAGAGCAGCATGCTGCAAAGGATCACCCC TGACGTCATCAGCTTTCTCAGGAACATCTCCAACTGGTCTGACGTCACCA TCAGATATATGGGCAACGAATATCCAGTTTGGGAACCTACGGACTACACA GAGTAAGCCATGTTTATCGTATATACACTTTATGATCTACAACTGTACTG ATTTCTACCGTTGTTGGCATAATTTCCTACCCACTTCTAGTGTAGCTGAG TGTATATTTCGCGAAATTTACTGTGCTGATTAAACTAACGAAAATACGAA CTGGAGCCTTTGAAACACATTTTACATATTTTGTAGTCAAACTGGTCATC TATTTAATTATATACAGGAAATAGACAGCAAGTTGTCGCTATGTTTTGTT TGTTTTTAATTTAGGCAAACTAACATCTGTATGTCTCTTACAGTATCAAG TTCTTCCTCCGGTTTGCTCCTACCTACAACTTTACGGAGATGCTATCCAG GTCTCCTGACCAGAGACGGACTCTGGAAGATGCTGTGCGGACCATGGCGA GCAACAGCAATCTTCCTCCAGAGCTTGCGTCAACAGTCGCAAATATCTGG GCAGAGGGGGTAAGTCCTAGGTCTCATGTTATATGATATTAAAGACTCTA TCAACACATATTCAATGGTCATTATCTATTATGTCAAACCCCGAATACCA TAGGCGATAGTGAATGTAGCCACAACAGTGTTACATGATCTAATAGAAGC GCAGTGTGAAAATTTGTCATACAGTCTGTACGACGGATACCCTTACAATT GGTGTTTTTACTTCTACTTCTACATTTCTGATCCAACACGATCCAATAGT TTTGATTGTGTTGAGATGGTTGATTCAAGAAGAACCACATGCCTTTTGTA ACGGAACGGGATTAAGAAACTAGTTGAACAACCTTATTAAATCGTGAATA GAATATTCTTCTGATTTCTTCTCTACAGCATGTGATACCGTTCACCATAA ACAAGGACCCAGCCCGTAAAGACACCGACATGGCTGTCATTGCAGAAGCC TTCGCACGCAGCATGGTCAACGTTGACATTTCAGGGACGCCTGTAAGGTC ATCGGATATTTCCTACGAGCTAGGATTCTACAGCATTTGTCAGTACAACT GTTCGACAATGTGAGTTTCGTTTTCCTTGTTCAAATTTATGTAGAATGTT GCATGCTACTGTTACTTGGGCGCCTAGTGTAAGTGATATACTCCATAAGG GGATAGCCCGACTGTACATCCATATGCTACTGTTAACAAGATTTTCATAG CACAAATGCCGATTACACTTTAGACGCCGTTATCAAAAAACAGTTTTCTG GACAATACGGTGAATTCAAAGCATGAACATCAAATTAATTTACATATAAC ATTTTTTTTTCTCTTATAATGTTTTAACAGTCCTTCCCAAGACGAGTGCG TCGCTGTACCTAGCTGCGGCTGGTGCACACTGAATGAAGGTCCCGGATGT GGAGACGACTGCTATCTGGTAGAATGGTATGTAGCCTTGATATTGTATGT CGAATGACTAATATCTTGAATGCCTCAGTGCATTATAAAGCTTGTTCCTT ATCATCAGTATTATTGTTGAATATTCATGTCAACACCATTCATAACTTTC GTCAATATCAAATTATCTAAAAAATACAAGTCTTTGCAGTATTTAAACAG TCAGAAAATATCAAATCTCGCGATAATGATAAACATTCGGTCATTGTTGA TATTAATGAGTAATAACGATTGATAAAAGGTGGCCATACAACTGGTATGT ACAGTGTTCATTTGGTTATTGACAGAAAATGGAATATTTGGAGAACATCG ATCAATGCGTGCAGTTTGTTTTTCTATATAAAGGTCGATAAGCGTGCCAT GCTATATGTGCCTATAAATACGTCCGGCCAAACATGACATGGTTGCATAA CCTGGTATTTGGGGCCTTGTTAGAGGTCATTTTCTTTTCGCCACATTTTA TGTATGGCCCCAGAGTCACAGCACAACTTGGAATGTGTTTACAAAAGTTC TACAGACCTTTTTTACGGAATTTTATCGAATTTTTACAGATCCTTTCACT CATAGGCAATATCAGATTACACAGCTTTTTTTTTGTTTTGTGACCTAGGG TGAGCCACTTCGCCTTCATCCCCTGTGAGCAGACACGTGACCTGAGCCCC GCCCAGAGACAACAGCTAGTGGATCAGTTCCGCCAAGAGGTAGCAGACAT TATGAACTCAACAACCAAGTTCATCAGAAACGTCGCCATTAATGATGTAA GTGTCATAGATGTAGGGTACTGAAGAAAATGATTATTCGGTTAACCAGTG ATGGTCTATAGTGGATGATAGTAGGAACATACACATATAATCGTATGTAC TAGTCGAGATGTTGGCAATAATAGATAGTTCCGACGCTGCCGGGGACTGT GGGTGAGGTCAGATGGTGAAGCCCCTTCCATTTTTTACATTTTGATACTT TCTGTGGTGTTCAAATTTGGTGTCATAGAGTTTTCAGAATTTGAAAACAG GCTGAAATGGCAGTATATGCGTAAAATGCACCTCAAAATGGTTTAAAATA GACGATTGACTTTGGATAAATTGGAAACTGTACAGTGAGCACATCTAGTC CAAAAACGGATGGCTTTCAGCTTCGACTTTAGAGCATTTCTCAACACCGT TCGGAACAACGAGGTGACTCATTCTCAATGGCATGATGATTTTGCTTTGT TCTAATTGATAGTAGGCATCCTTCCATCTTTTCAGATTAATACAGATAGA TTAAACGTTATACAAGAAACAACTTAGAGCTGGTATAAATAGGACTAAAA TTCATGATATACCAGATGAGCAAGTTCATTTTGCTATCACTCTTCGTCAT CCATTTCTCCAGTCCGGGATCTACTTCGAGCTTCAGGCCACCATGCAGGA CCGCTTCCTTCCGGACTACGAGAGCAAAATTCGGGACGCCTTCGAACTGG CGGCTAACTTTACAGTGGGGGATGTTATAAATCCAGACCTTTTCAGAACT CGCAACCCTGAGGACTTCACTGAGTAAGCAGATAACATAGAAAAACTGAT GCCAAGCTATTCTAACTTTGCAAATATGATGAGGAGCGGATCTAGTACGA TGTTGTTCTCTATACTTGTAGGTGCTTTCTGCATTGATAAGTCAAGCAAC ACGATGCTGCAACGCGACAAATAAGAAACCTAGTATAAACGGACGAGGTG CTACATTACAATGCTTGTATATCACTACATGTAACGTGTTAGGTAAATGA TGTGGAAAGCCTACGGGACACACCTGGGTTTATATGGCGTCAGTTCACTC TCAACTCTAACGACCACATCTCTCGGAATAATTCTGAAGCAAGATAACTG TGTGTCGAGGGAAAGGGTAAGCTACAGGAACTTAGAGTAAACTTGGCAGA AAATGTTTACCTTTCAATCATAATGTTCAAACACCTCAAAGTTACATATG CATGATTGTTTGAAATGCAAATTATATTCACTTTTATATGCTTCTTACAG TATGGTTGTGACAATGGTCTTCAACGGTGTCAACTTTGCGAACCTGGTCG GTCAACATTCCGTGTCAGAAAGCGTGCTTCATCCCGCACTTAAGACTGCA CTGACGAATGCTGGCGTGTCCTCGCAGTACGTGACATCAAGCAGGGTACT GCAAAGAGGGCAGGTTGGTGGTGTGGTCATGTGTTGTTAAGAGACAATGT TATTGCAATGCATAATTGAATGGAAAGGTACTAAGAAAAGATAACGTCTC ATAGTGGCAATTTTGCCTGTGACACATTGACGCAGCAAATCCGTGTGTGT CTTTGACACACGGATTAGCTAAATAGGCTCGGTGGGTGTCACTCCACCGT CAGGGTTGGGATATGGTGTAAAGTGACCTTCACAAGGGCACAATGTCGGG GCATGACGAGTATCGAGCGCAGAGAACCTTCTTGTTTCGATCCCAGCACT GCGCCACAACCATTGCGCCACACCGACGCTTAAGGAAAAGTCCGGCCTTA CTTATTGTCGCAACCCCTATTTAAATTAATAAGTTATGGTAGAATCTTTA AAAAAACATAGTTATTTTATCTCTGGGTGGTCATTCTATTTTCATCACGT GTAGATAAAAAAGCAGTTGTATTAAACTGCAATATCTGACACGATATGAA GATGGTACCCGCATTTTGACAGTCTAACGCCAGTCTTTGTCAAAGAATGG GCAATGCATGGCTTGTGATTTCACGCTATGTAGATATGACACGTGAATCG GTGAGCATTGAGTCAAGAACTACAAAAGGTATGTGACGTCCTCCGTCTAA TAAAAATACATGAAACTATCTATATTTACTTACAGGACTACATCGAGTTC TCCATATCAAAGGATTTTGACAGCAGTGACAACCTGACAGTAGAAGTTGA GAAACTCGTGGCTGCCCAAAACCGGATTCTACTGAATCTGACACCCGTGA GTACTAACTTTATTGTTGCGTATGACATAATACAGTAAAATTGCACTGTT TATGAAAAAGGTATATATATATATATATATATATATATATATATATATAT ATATATATACATATACGAAGTTACATACCCATTCGTATTTGCGGATACCA AGTTTACAACATGTATGATGCAATATCGTTAGTGTCATGTACTAAGAATA ACACAAGTCATGTTTCAATGAAATTCATGCCCAGGGCTGGCCTGTTAGCA GTGACGTCATCTACAGAGGGACCTTTGACAGTATATGTGTGCCGACCCCC CCTCAAGCTTTAAGTACAGCCACCCCAAGTACAACAACCAGTCAAGGTGC AGCAAGCTCCCTCGGTTCAACAACCGGCCCCTCGCACGGTGCAACAGCAA ACACTGCGACAACCGTCAGTGTAGGCACAGGAGCCAATCCATTAATCAGC CCATCGGTATGTGTTCCATGTTTATCTTCGGTGAAGGTAACCAGTGAGAA AATATCTCTTTTCCAGCCCATTAACTTTTTATATTGTGTTACTCGCAGTC CAATTTAATGGAGCAGCATGCTCCTTTCGATCATTAGTGTAAAGGTTTGA TGCAGTCTGAGTAGCTGTATATCTTAGAACTTTTACAAATCAATGAAGCT GGCAGGTGCTGACCGATATTTTGGTTTTCTTTTGTACAAGTACAAATAAA TGGACCGTAGGTCAACCTTACACAGTTTTTTTTCGCGTTTTACCGGTATT TTTAAGTGTCTTTCTGGTACATCCTATTCTTTGAGCTGATGTCATTCAAA CTTGGTCATTTAAAAAGTCGGAATTTCTTTCTTTTAATTCATTTATTTAT TTATTTGTTAGGCTGTGTACAATGTACAGCAGCCAAGGCTGCCCGACTAG CTATTGCTATTACAAGGGTCCAGCCTTGCTGCAAAAGTACATGATGAAAT ACAATGGTTGCTTTAGTTAATTTATCATGTAAAGAACGCTTTAGCTTTTT TTTTCATTAAAATGCGAAAATGGACTCACGTGAAAACACTTTATTCTATC GGCCGATATGTACTGAATGCAGTGTAGTTAATTTTGTCAAATGTTGACAA TCGATACAGACATAACCACAGACATGGGATATTGTCGACATGATTAGGTT CACCTGTACTTCAGAAGGTTTAGTTTTTTCCCCACTCTTGGCTTAAGATT ATGGAGACTTTGTGTCTCAGGACCTGTGAATATGATATATTGCAACAACT CTTTCCCTAACTATGGCCAGACTGGGACTAGTACTGGTACTGGGACACCA TCGGGAGCTTGTTGGTGTTGTCCAGTAATCCCAGCTGGGGTCGTCGACTC TCCTGAGGTAAGTCTCGTAGATCATAGAAATTTTTTCGGCGACAAAGCCC CTACAACTACTGACTTGTAATCACCAAATAAACCACGGAGGGAGTGAAGC ATATTTCATAAAGTAAATTTTAGACTGACACAAACATTGTTAAAATTAAT TTTGAAAACCCATTATTCCGTAACTAACTCATGCTTTATTCCGTTACATC TGTATAAACATTAGGAATGGAGGATTGTGATTGGTCCACAGATCCTGGCT AAACGATAGTCTATTTTACCACAGTATGATCCCGTGGCGGCTACGGGCGG ACTGTCCTCCACGGACAAAGTCGGGATGGGGGTGGGCATCCCGGTCGCGC TGGCGGCCCTGGCGGGTCTCGGGGCGCTGCTCATGTTCTTCCTGAAGAGG AAACCGGACCGCCCGCCAACTCCCATCCGCAGGAACGTCGTTGCGCCAGC CGTGGAGTCCTTTGAGACCAACATCTACAGCGTAAGTAGAGTCCTATACT TCTTTCATAAACTCTGTCCACTAAGGCATCGACCGTTGAGTACCAAAATG CCTGAAGTAGTTTCAGTAATTCCGTTCATTGTGAAATGTATTTTTGTAAG TTTTACGTGTTTCGTTATCTTCTGAATCATACGTTTACATCATGGGCCAT ATGCAATTTAGAAGTGAAATTATATATAGGTCATACTAATGTAATATTTA TACATGTATATAATATAATACTAATTATATACAGGTCATACTAATGTAAT ATTTTGGAAATATGGCCTCCCTTCCAACGTTGAATGGAAATCACGTTTTA TAAAAAGGACCACATTATTTATCAATCGGAACGAATCGGGGAAAGATTAA ATTCATTCACTAGACGCCCGAAATACATAGATAGCTCTAATTGTATCAGG ATAATCAATTCCAAATTATCAATCTTCACAACGAGGACAAAGAAAGTGAT AAAGATGTAACAATACCTATCTGATTCGCTTCTGACGCTTCAAATTGCAC GATAATTGTAACGAGTACAGTTTTACTAGGGGTGCATTATGATTCAAGCC AAGCTGAACTGTTTTATTCCTATAAATGATCAAATGATCAAATGGTTATT TTTTATCTATGTTGTAAGCTTCCCAAGCACAATGGGACATTCCAAAATGC ATTTTACATGACAGGCTTCCATGGACGACGAGCTGAGTTACCAGTTCGGT AAGAAGGGCGCAGAGCTGCACCGTTTCCGGGACCCTGACGCCGTGTATGG CCGCCTGTCGACCGCGTCGTGGTCCCCATACCCGAGCAGCGCCAGCTCCT CATCCACCATGGAGAGCTCCCTCTCAACACCTGATGTTTATTAGATACGT ATGTCTACTCAAGCACTAGTAAGCTACACAAAACCTAAGTGATTGTAGGA GCATCACTGTAGTATTTAAGCTGCGCAAGAACCTCTCTGAGCCAAATGCG TCGAACGGTCTTCGAGGACATTCTTGAGCTAAACGCGCATATGTGTCGCA CATATCTAGCTGTCTTCAAGTTGTGACGGAAGATGCTATCTTAGATCATC TTTGTCGGCGCTTGGTTCTTTCACGGCCTGCAAATTTATGTCAAAATCGT ACGACGGCCGACCACGAATGTGAAATATTATAATAAAGCAAAGGGCATTG AGTTACTAGAATATAAAACCATGATTTGGGTCTGTCAAAGAAAGTTTTAT GAACTTAGTCATGTCATGGTGCCTTATGTCTCTGACGTGAACATGTGTGG TGATATTTTTGGTTAATTTCTTTGGTTTAAATACTTTGCTTTAACTTCGC ATGCATAGCATGATATATAAGCAGCGCTTTCTTATATAGACGCTTCCTAA TATTTTCTTGCGTGCTACAACAGTATTATATATACACTTTGCAAATTAGT TTGCATTCACATATACCTCCACTGGTTTCTCACGCACACGTCTGCAACCT ATACGTTTTCTGAAGATTGCACGCTAGTTAGTTACCTGTGTATTTTGCTG CATGTAAACAATCTCTACCCAAATTTTTAATAGTGTCTTTTCGCCCTTTG ATGGACCGTTTATAGAACTATAGCAACATGTATAGTGCTTTAGGGCTATG GCAACAAACTACCAAATCTTAAACGTTTTAACTCTGATAAAAGTTTTATT AATTTTCTCATTGTTATGGGAAAACGAAATAACGTTTAGCAAAGAGCCTT CAGTTTAGCGGTTCAAGGTTTTGCTTGTATTCTGACTCTTCCGGTAACAT ATGAGATAGCCTTTACTGAATTACTGCGTAGACCAGATCGTGTTAAGCTA TTTTTGGGTTGACCTTTTTTCCTCTGTTGTGTAGGGTCGGGTGTGTTGCA ATTCCTTTCCATACCGTGGTGTGGCGTTTGACGTGTTTGGACGATACTAT ATACAATACTGAACTAGTAACCTCCAAATAAACGTGTGTGCTTTCTAGAC

Coding sequence (CDS) from alignment at Sc0000023:1873627..1890126-

>transcript:BL96901_cuf5 ID=transcript:BL96901_cuf5|Name=transcript:BL96901_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=3336bp|location=Sequence derived from alignment at Sc0000023:1873627..1890126- (Branchiostoma lanceolatum)
CGTATAGGCACCACAGCCAATCCAAACCACTACAGGTCACGTGGTCTAGA
GGACTACACAAACTTGCGTGTTCAGCTTGTATTTGACTCGACGCTGAATT
TGGATCCGTTGCTTGGTAACGACCTGACGCTACGAGACACGATCCGCGCC
CAAATAAGGAACAACCTTGTAACCGCGGGGGTCCGACCAGCCGTCCTGGC
AACACTTGGAGACATCTGGATGGAAAGGAACGTCATTCCCTTTACAATAA
GTAAGACTGCTGACGACCTCATTAGTCTCCTCGATGAAGCAGGCCAGTTG
GACAAGCTGATCGCCGCAAACTCCGCCATCTTCAACATCGACGGCGCTAC
ATGGCGGCCTGTGGGCATGGTCGTCAACGGGTCGTTCGACATTTTGTGTC
CACAACAGTGTCAGGACGGTGCTGATCGTGACTCCTGTACCCTGATCCCT
GGATGTGATTGGGCAGACTATGACAACCCGGTCACGTGCCTGGAGGACGC
CTACTTGGTGGAACACATGAACATGTCAGCGTACTTCCCATGCCTGTTCG
TTCCCGTCCATCTAAACGGTACAACCCAGATGCAACAGGATTATGCTAAC
AGTTTCCTCCGTTCTTTGCGCGCCGCTCTCCAAGACAGGGGCTTCGTGGT
ACCAGAGAAAGTCATTCACGCCGTCCAAGTTGGAAGAGACACCATCGACT
TTAGGATCCAGAGGACGATGGAATACCAGAACCTGACCGGCCTGCACAGC
GCCATTCAAGATATCCTATCATGGGACCAACAATTCACCTTCAATGGCTT
CAGATCGGCAAATCCGGACGACGAGTTCAACAACACTGTCAAGTTTGAGA
TCAGCTTTGAAGACCAGAACAATATGGATATAAATTTCGACGACATTCTG
GATTCGAACTTTACTATTCGTGACGTCTTGGAGCAGGACATCATCGATTT
CGTCCACACAACGCTCGGGCATTCGTCTGTCGCCAGCTTAATCTTGGACA
ACATATGGATACAGAGTAACTACTGCACCTTCAGCATTAGCGTCCCGCTA
GACCAGGTGGATGCAATAGGAGCAGAGGCCATGAAGCTCGTGAGCAACAT
CGGGAACTTCATCATCCACGTGGGAAGTTTTCAAGTTAAAGCAGTGGAGT
ACAAGAGCACCGAAAGTTGTGACTTCTGTCCCCCTGACTGTGAACCGAGA
GATGAGCTGGCCTGCTATCAACACACCACCTGCGAATGGTGTGTGTTTGA
AGGTGCACCACACTGCGATGCCGACTGTTTGCTGCAAGAGGAAACGAAAG
AGGAGTTGAGCGTGTTTTTCCCCTGCCTACCTGAGGTTATCGACGATCAG
ACAGAACAGCAAATAAAGGACAGTTTCCGGGATGAAGTTCTTCAGCTTCT
GAGAGCTAAATTTGGCGGCTTTAACACCACCAAGAACATCGTTAACATCA
CCATCACAAATCGTACCGTCTCGTTCTCCTTGAAGAGCAGCATGCTGCAA
AGGATCACCCCTGACGTCATCAGCTTTCTCAGGAACATCTCCAACTGGTC
TGACGTCACCATCAGATATATGGGCAACGAATATCCAGTTTGGGAACCTA
CGGACTACACAGATATCAAGTTCTTCCTCCGGTTTGCTCCTACCTACAAC
TTTACGGAGATGCTATCCAGGTCTCCTGACCAGAGACGGACTCTGGAAGA
TGCTGTGCGGACCATGGCGAGCAACAGCAATCTTCCTCCAGAGCTTGCGT
CAACAGTCGCAAATATCTGGGCAGAGGGGCATGTGATACCGTTCACCATA
AACAAGGACCCAGCCCGTAAAGACACCGACATGGCTGTCATTGCAGAAGC
CTTCGCACGCAGCATGGTCAACGTTGACATTTCAGGGACGCCTGTAAGGT
CATCGGATATTTCCTACGAGCTAGGATTCTACAGCATTTGTCAGTACAAC
TGTTCGACAATTCCTTCCCAAGACGAGTGCGTCGCTGTACCTAGCTGCGG
CTGGTGCACACTGAATGAAGGTCCCGGATGTGGAGACGACTGCTATCTGG
TAGAATGGGTGAGCCACTTCGCCTTCATCCCCTGTGAGCAGACACGTGAC
CTGAGCCCCGCCCAGAGACAACAGCTAGTGGATCAGTTCCGCCAAGAGGT
AGCAGACATTATGAACTCAACAACCAAGTTCATCAGAAACGTCGCCATTA
ATGATTCCGGGATCTACTTCGAGCTTCAGGCCACCATGCAGGACCGCTTC
CTTCCGGACTACGAGAGCAAAATTCGGGACGCCTTCGAACTGGCGGCTAA
CTTTACAGTGGGGGATGTTATAAATCCAGACCTTTTCAGAACTCGCAACC
CTGAGGACTTCACTGATATGGTTGTGACAATGGTCTTCAACGGTGTCAAC
TTTGCGAACCTGGTCGGTCAACATTCCGTGTCAGAAAGCGTGCTTCATCC
CGCACTTAAGACTGCACTGACGAATGCTGGCGTGTCCTCGCAGTACGTGA
CATCAAGCAGGGTACTGCAAAGAGGGCAGGACTACATCGAGTTCTCCATA
TCAAAGGATTTTGACAGCAGTGACAACCTGACAGTAGAAGTTGAGAAACT
CGTGGCTGCCCAAAACCGGATTCTACTGAATCTGACACCCGGCTGGCCTG
TTAGCAGTGACGTCATCTACAGAGGGACCTTTGACAGTATATGTGTGCCG
ACCCCCCCTCAAGCTTTAAGTACAGCCACCCCAAGTACAACAACCAGTCA
AGGTGCAGCAAGCTCCCTCGGTTCAACAACCGGCCCCTCGCACGGTGCAA
CAGCAAACACTGCGACAACCGTCAGTGTAGGCACAGGAGCCAATCCATTA
ATCAGCCCATCGACTGGGACTAGTACTGGTACTGGGACACCATCGGGAGC
TTGTTGGTGTTGTCCAGTAATCCCAGCTGGGGTCGTCGACTCTCCTGAGT
ATGATCCCGTGGCGGCTACGGGCGGACTGTCCTCCACGGACAAAGTCGGG
ATGGGGGTGGGCATCCCGGTCGCGCTGGCGGCCCTGGCGGGTCTCGGGGC
GCTGCTCATGTTCTTCCTGAAGAGGAAACCGGACCGCCCGCCAACTCCCA
TCCGCAGGAACGTCGTTGCGCCAGCCGTGGAGTCCTTTGAGACCAACATC
TACAGCGCTTCCATGGACGACGAGCTGAGTTACCAGTTCGGTAAGAAGGG
CGCAGAGCTGCACCGTTTCCGGGACCCTGACGCCGTGTATGGCCGCCTGT
CGACCGCGTCGTGGTCCCCATACCCGAGCAGCGCCAGCTCCTCATCCACC
ATGGAGAGCTCCCTCTCAACACCTGATGTTTATTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96901gene:BL96901Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96901_cuf5transcript:BL96901_cuf5-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96901_cuf5-E1BL96901_cuf5-E1-1564476830-155783Branchiostoma lanceolatumexon
BL96901_cuf5-E2BL96901_cuf5-E2-1564476830-155780Branchiostoma lanceolatumexon
BL96901_cuf5-E3BL96901_cuf5-E3-1564476830-155778Branchiostoma lanceolatumexon
BL96901_cuf5-E4BL96901_cuf5-E4-1564476830-155776Branchiostoma lanceolatumexon
BL96901_cuf5-E5BL96901_cuf5-E5-1564476830-155774Branchiostoma lanceolatumexon
BL96901_cuf5-E6BL96901_cuf5-E6-1564476830-155772Branchiostoma lanceolatumexon
BL96901_cuf5-E7BL96901_cuf5-E7-1564476830-155770Branchiostoma lanceolatumexon
BL96901_cuf5-E8BL96901_cuf5-E8-1564476830-155768Branchiostoma lanceolatumexon
BL96901_cuf5-E9BL96901_cuf5-E9-1564476830-155766Branchiostoma lanceolatumexon
BL96901_cuf5-E10BL96901_cuf5-E10-1564476830-155764Branchiostoma lanceolatumexon
BL96901_cuf5-E11BL96901_cuf5-E11-1564476830-155762Branchiostoma lanceolatumexon
BL96901_cuf5-E12BL96901_cuf5-E12-1564476830-155760Branchiostoma lanceolatumexon
BL96901_cuf5-E13BL96901_cuf5-E13-1564476830-155758Branchiostoma lanceolatumexon
BL96901_cuf5-E14BL96901_cuf5-E14-1564476830-155756Branchiostoma lanceolatumexon
BL96901_cuf5-E15BL96901_cuf5-E15-1564476830-155754Branchiostoma lanceolatumexon
BL96901_cuf5-E16BL96901_cuf5-E16-1564476830-155752Branchiostoma lanceolatumexon
BL96901_cuf5-E17BL96901_cuf5-E17-1564476830-155750Branchiostoma lanceolatumexon
BL96901_cuf5-E18BL96901_cuf5-E18-1564476830-155748Branchiostoma lanceolatumexon
BL96901_cuf5-E19BL96901_cuf5-E19-1564476830-155746Branchiostoma lanceolatumexon
BL96901_cuf5-E20BL96901_cuf5-E20-1564476830-155744Branchiostoma lanceolatumexon
BL96901_cuf5-E21BL96901_cuf5-E21-1564476830-155742Branchiostoma lanceolatumexon
BL96901_cuf5-E22BL96901_cuf5-E22-1564476830-155740Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000023genomeSc0000023:1873627..1890126 -
Properties
Property NameValue
Transcript idBL96901_cuf5
Biotypeprotein_coding