transcript:BL96914_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96914_cuf1
Unique Nametranscript:BL96914_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96914_cuf1

>transcript:BL96914_cuf1-protein ID=transcript:BL96914_cuf1-protein|Name=transcript:BL96914_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=355bp
NGTCEDGVNGYRCFCIPGYNGDNCENDIDECESSPCLNGGTCTEGVNIYN
CSCPRGFEGQHCDIDIDECMSIPCLNNGTCVEGSGNYTCLCPDGYTGQTC
ETDINECTSDPCQHNSTCQDLVNGYNCSCAPGFEGKNCQVEIDECSSDPC
LHGGTCEDGINEYLCHCLTGYEGTSCQNDTDDCANHQCINGGSCVDGLNN
YSCSCLPGFEGDFCEINIDACLSDPCHNGGTCHDGLDSYICHCAPGYEGT
NCDTELGDSFTAQGGIGSTSGSIESSRRDTGSEDITNLLDTNSADFKAKA
REIGKQEDILNLLNQTLTFNITDLANRTVSNSDVVVPCMFCFALCFSLVL
VLDIT
Run BLAST on NCBI

mRNA from alignment at Sc0000014:2982292..2987110-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96914_cuf1 ID=transcript:BL96914_cuf1|Name=transcript:BL96914_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4819bp|location=Sequence derived from alignment at Sc0000014:2982292..2987110- (Branchiostoma lanceolatum)
ATAACGGCACTTGTGAAGACGGAGTGAATGGCTACAGATGTTTCTGTATC
CCTGGATATAACGGAGACAACTGTGAAAATGGTAAGTAATATGGCCTGAA
ACTAGAGATATCAAATGATGTGAGAAAAGAAAAAACACTTTGTACACAAC
CAAGTGTTTTATTCCACCGACGTTTCACAAAATATAAAACATGTGGTTGA
ACACAAAGAGTCTTATGTTCAGTGACTTACCAACCTGATGAAACTATTCA
TAGATCAAATCATACCCAATTTACAACATAATGAGATTGCTGAAAACCAG
GCAGATTTAGATATATTCAAAGCTGACATATTTTTGCAATAATTGCAATG
TTAAATGAAGTACCAATGTTTCAGCACTAAGGACAGGTCCTGCTTGACTT
CAGTCATTTTACTGCAGATACTGTTGTAGTATTTTGAATGATATATCTGG
CTTTTTATGTATACCCTAACATACTTGTCTCTGTTATATTTCAGACATCG
ATGAATGCGAGTCTAGCCCATGCCTCAATGGAGGAACTTGTACAGAAGGG
GTTAACATCTACAACTGCAGCTGTCCAAGAGGATTTGAAGGACAGCATTG
TGATATAGGTATATATCTTTGGTCAAAATTTTATTGTGATCGATCAAATG
ATTCTAAGCCATTGAATTTCTTATAATGAAAAAACTGCACGTCATCAGAA
ACAAATATCATTATTTATTTTGTGAAAGTAGTTTGAATGCAACAATAGAT
TTAACAATTAATTTCACACTGTACCCTATAAGTTCATTCACCATTCCGAA
TATGCATGCATGCATGCAAAGCTGAAGGCCCGACTTAAACAGTTCTCCTC
TTAACCATTGTCTCGATCGGCATAACAATGTCTAGATGTGTAATGTCTCA
GGGGCCTTCACCTTTGGCCGCACATGTGTAGCTTATTTCACTTAATGTTC
ATGCTATGTTTTATGCCATTTTTTTTCTCTCTCTCTCTCTCTCTCTCTCA
GATATAGATGAGTGCATGTCCATACCCTGTTTGAATAACGGAACATGTGT
GGAGGGTAGTGGGAACTACACCTGCCTATGTCCTGATGGTTACACTGGAC
AGACATGTGAAACAGGTAGGGCATATGTGACATTTTGTCTGGAAAGGTGA
CAGAAATATCTTTCACCTCAATTCGAAAGTGGACCTTCTTCTTTCTTTCT
TTCTTTCTTGAAATAATATATATAAACAGTCATAATTGTTGTACCTCTTT
ACAGAGGTTTAGAGACATTTATTAACTTCATCCTCTAGTACAGTTTGTCA
TCTATACATTCAGAAAGCAGTGGTAGAAAATGTCACAACTGCTCAATGTA
TGTATTAGACCTAAATTTTAATTTTGTTCAGTCCAACAATGTATGGAGTA
AGATAAGAGAGGTTTGAAGTTGTCATAATGATTGTATTACTTTTCAGATA
TCAATGAATGCACGTCTGATCCGTGCCAACACAACAGTACCTGTCAGGAC
CTGGTCAATGGCTACAACTGTTCATGTGCTCCAGGGTTTGAAGGCAAAAA
CTGTCAAGTTGGTAAGAACTTTGTTTTGTCACAAAATGATTTCAATCTAT
TTTGCAGACTGCTTTTAAAAAAGAACAATTTACAATTACAAATATATTGA
CACAAAAGTGCACAAATGCAGTGTTTTTGTATGCAAAACTATGCATGTAC
CAACGTCAGGGATATCTTGGTTGCAGTGTGTCAGGAAGGACATTTAGGTG
TGCGGCCTAACCAGTGTGAACCCGCTGGACAGAGCTGCTTGGAAGCGCGG
TGTGAAGACTAGCAGACTACTGCCTACCCCTATATCAGGGACCCCAGCTG
CAGTATGATCAAACACTGGATAATACTTCTAATGTTTCAACATGCAGGAA
AGAAACCTATTTACTTTCTTCTTGTTTTTACAACAGAAATTGATGAGTGT
TCGTCAGACCCATGTCTTCATGGAGGGACCTGTGAGGATGGTATCAATGA
ATATCTCTGCCACTGTCTAACTGGGTATGAAGGAACAAGCTGTCAAAATG
GTAGGTCTGAAATGCTGTTCAATCTTATCATGCTTATCAATCTGTCTTAG
TCACTAACCAAAGACAGCAGATGCTGTCTGAACGTCTGTTTCAAAATCTT
ATCCAGCTTCTTGAGTAAATATTTTCGGCCATCTTATCACTGTTTATATC
ATTTTCATTGTTCTTTGCACAAGCAGTGTTACTATTGAGAATGAAGTGTT
TAAAATAAACATCAACAGGTGATAGTACAACTCCGGACAGACAGTAGACT
TCCATGAAATCTTATTTTCTAGATGTATACTGGCCAGGTGAGTTGATGAC
TATAGGCATGGTGTAAGGCATAGAAACAAATAGGTAGGTGTTAATAAGGC
GTCACAGGGGACATGACCAATTCTACTGAATACTGGGAAACTTCTGTGAA
GTTCCTAGAATTCTGGGAAGTTCCCAGAATTCTGGAGACGAAATTTCTGC
AAAATTGGTCATGTCCCTTGAGCTAACGTATAAACACCTACATATTCATT
AACAGTCTTACATCATACCTACAGTCATCTAATAATATGGGCAGTATACT
AAGATTGTGCGGAATTGTCTATCCAGAATTAGTGTCACTTGTTTGTCTCC
TTTTCTGCTGACTACTTTGCCTTAGATGTGTAGAATTACTGTGGACTATA
CATGTATGAGAAGCCCTTCCCATTCTTCAGATACAGATGACTGTGCCAAC
CACCAGTGTATAAATGGAGGAAGTTGTGTCGATGGTCTCAACAACTACAG
CTGCTCGTGTCTTCCAGGATTTGAAGGAGACTTCTGTGAAATCAGTATGA
TCTTTAAAATGTCTTGGCAACATAGCATGCATATTTCTCAAGCGGGTTGC
TAACTTTCTGCGACTGATTGATTTGACAGAACAGCTCAACAAACTTCATT
GATAAAGAACAAATCTCTTTACGCTGTGTTTTGTTGTCTTATTAGTCAAA
CATGCACCTTTTGCATGATATTCCCATTATAAAGTCAAAGGTAACAGCAA
GCCAATTTAGCAGGCAGCAACGCCGCCAGCGTGCTGCAAATCCAGTGAGA
TACCTTAAGCAACCATAGCATGCATATTTCCAACAAAGAAAGTGGGTACA
TAACTACCTATACGACTCAGAAAATATCAACATGTATCTATCGGAATGTC
TATCCTTCATCAACATAGGAAATATCAATATTGTTTTGCTGTACTGTTCT
TTAAGCAATGGTAAAATACTTCTATCTTTTTGCAGACATTGACGCGTGCT
TGTCAGACCCATGTCACAATGGAGGTACCTGTCATGATGGCCTCGACTCC
TACATCTGCCACTGTGCACCTGGGTATGAGGGGACAAACTGCGACACTGG
TAGGTCTTACATAGGTTGCTTCTATCCATTTGTTACCTCAGCACAGATGA
ACATCCATTTGGACCAGGGGTGTCAATGTTTGGGAGCCCATGTTGTTAAT
TTTCATCTTAAATGTAGCACACATGTAGGGCAGCAAGTTTCCTTGCTGTT
TCAGTTGCAGGGTATATTGTCATTCTATAGGGAGGGGTTGACAGCCCATT
CCCTTTCACATGCTTGAAGCACCTCCTCAGACACGGGACACAAATTTTAT
GTCCCTTCTGAAAGACGGTGCAGCCCCAACCAAGATGTCCTGACCCCGGG
ACTTGAACTGGGGTCTCCGAGCTATCAACTAATTGGAACCAGGAGCTCAA
CTATGATGCCACTACCGCCAAAGTGCCACAGTCCAGTGAAATACCCGCTT
TAGCTAAGTTCTGAAAGCAAAGTAGACACTGTTGAAGAAAGACTCTTCAT
CACACCTACATGTATGTCTAGTGACTGAGCAAATCTGACAAAAACGCATA
AACAGGCATTGTCACAGTCTCAAACTGTTCTGTCATCTCTTGCAGAGCTG
GGAGACAGTTTCACAGCACAAGGAGGCATTGGAAGCACCTCAGGAAGCAT
AGAGTCAAGTCGAAGAGACACTGGCTCAGAGGACATTACAAACTTACTTG
ACACAAATTCTGCAGACTTTAAGGCCAAAGCAAGAGAAATTGGAAAGCAA
GAAGATATACTGAATTTATTGAATCAAACCCTGACTTTCAATATTACTGA
TCTTGCCAATAGGACAGTGTCTAATAGTGATGTAGTGGTTCCCTGTATGT
TTTGTTTTGCTCTATGTTTTTCTTTAGTATTGGTGTTGGATATAACATAG
CAGTAACAAGAAAGTCATTCCTACTTCAAGCAATGACAATACACCTTTCT
CACACGGCGGACATAATAGAATAAAAACGAGGCTATTGTGGCAAACATTA
GACCAATCCTAACTGTCAATCACAAGCCAATGATTACATGATAATTAGAG
AATCGACCAATGAGGAATTGGCTGCATGTCCGTCAAATATCGGCATGTCT
ATGTAAATAATTTTTGTTCTATCATATCCGTCGCGTGAGAAAAGGTTAAG
TGTATACCAGCAGGAAGCAGCTTTGAGTATTAATGATTATCTAAGAATAT
CTTTTTTGTGTGCAAGAAGATATTTTCTGTTTTAATTGATCTGCAGTAAG
GGATTTATTATAGTATAGTCACATTAATTGTTATTGACAAAGGCTAAGTA
AATTTTATAACCTGGGGGAATTGTTAGCCTGAAATGGTATGATATAATAA
TTAAGTTTAAATTTGAATCTATTTTTTTGAATACTGAATGTTGTCAGGAG
CTGATAATGTGCGCAAACACTGTTTAAGACCTTTGTACAAGGTATTAAAC
ACATTTGTGTAACTTGTTC

Coding sequence (CDS) from alignment at Sc0000014:2982292..2987110-

>transcript:BL96914_cuf1 ID=transcript:BL96914_cuf1|Name=transcript:BL96914_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1068bp|location=Sequence derived from alignment at Sc0000014:2982292..2987110- (Branchiostoma lanceolatum)
AACGGCACTTGTGAAGACGGAGTGAATGGCTACAGATGTTTCTGTATCCC
TGGATATAACGGAGACAACTGTGAAAATGACATCGATGAATGCGAGTCTA
GCCCATGCCTCAATGGAGGAACTTGTACAGAAGGGGTTAACATCTACAAC
TGCAGCTGTCCAAGAGGATTTGAAGGACAGCATTGTGATATAGATATAGA
TGAGTGCATGTCCATACCCTGTTTGAATAACGGAACATGTGTGGAGGGTA
GTGGGAACTACACCTGCCTATGTCCTGATGGTTACACTGGACAGACATGT
GAAACAGATATCAATGAATGCACGTCTGATCCGTGCCAACACAACAGTAC
CTGTCAGGACCTGGTCAATGGCTACAACTGTTCATGTGCTCCAGGGTTTG
AAGGCAAAAACTGTCAAGTTGAAATTGATGAGTGTTCGTCAGACCCATGT
CTTCATGGAGGGACCTGTGAGGATGGTATCAATGAATATCTCTGCCACTG
TCTAACTGGGTATGAAGGAACAAGCTGTCAAAATGATACAGATGACTGTG
CCAACCACCAGTGTATAAATGGAGGAAGTTGTGTCGATGGTCTCAACAAC
TACAGCTGCTCGTGTCTTCCAGGATTTGAAGGAGACTTCTGTGAAATCAA
CATTGACGCGTGCTTGTCAGACCCATGTCACAATGGAGGTACCTGTCATG
ATGGCCTCGACTCCTACATCTGCCACTGTGCACCTGGGTATGAGGGGACA
AACTGCGACACTGAGCTGGGAGACAGTTTCACAGCACAAGGAGGCATTGG
AAGCACCTCAGGAAGCATAGAGTCAAGTCGAAGAGACACTGGCTCAGAGG
ACATTACAAACTTACTTGACACAAATTCTGCAGACTTTAAGGCCAAAGCA
AGAGAAATTGGAAAGCAAGAAGATATACTGAATTTATTGAATCAAACCCT
GACTTTCAATATTACTGATCTTGCCAATAGGACAGTGTCTAATAGTGATG
TAGTGGTTCCCTGTATGTTTTGTTTTGCTCTATGTTTTTCTTTAGTATTG
GTGTTGGATATAACATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96914gene:BL96914Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96914_cuf1transcript:BL96914_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96914_cuf1-E1BL96914_cuf1-E1-1564476830-121364Branchiostoma lanceolatumexon
BL96914_cuf1-E2BL96914_cuf1-E2-1564476830-121361Branchiostoma lanceolatumexon
BL96914_cuf1-E3BL96914_cuf1-E3-1564476830-121359Branchiostoma lanceolatumexon
BL96914_cuf1-E4BL96914_cuf1-E4-1564476830-121357Branchiostoma lanceolatumexon
BL96914_cuf1-E5BL96914_cuf1-E5-1564476830-121355Branchiostoma lanceolatumexon
BL96914_cuf1-E6BL96914_cuf1-E6-1564476830-121353Branchiostoma lanceolatumexon
BL96914_cuf1-E7BL96914_cuf1-E7-1564476830-121351Branchiostoma lanceolatumexon
BL96914_cuf1-E8BL96914_cuf1-E8-1564476830-121349Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000014genomeSc0000014:2982292..2987110 -
Properties
Property NameValue
Transcript idBL96914_cuf1
Biotypeprotein_coding