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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96997_cuf0 >transcript:BL96997_cuf0-protein ID=transcript:BL96997_cuf0-protein|Name=transcript:BL96997_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=448bp
PTEATRGSSTNYPFWPGGMDEPDLGTVLGEEGGGAVDFQTDLLSCPPGFE
HGVDFKKLKKKEEQLAKMAAPSQHAPNVLNLADILAGDDGMDWSEDEEEE
EEEKEAKELPTLQRADSLENMLPQESQAAEVPIPPPQGKPPQEEQWAVKV
DISTPVSDFHKRIPNPAYQWPFELDVFQKQAILHLENHESVFVAAHTSAG
KTVVAEYAIALSQKHVTRTVYTSPIKALSNQKFRDFKQTFEDVGLLTGDV
QLRPEAACLIMTTEILRSMLYNGSDVIRDLEWVIFDEVHYINDAERGVVW
EEVLIMLPEHVNIILLSATVPNTMEFADWIGRTKKKKIYVISTLKRPVPL
EHFLYTGNSKQTSKERFLIVDSARNFLTKGYYAAIDAKKARASKSSSGYG
AKGTRGGDPRQEKNVWLSIIQAIQRDDKLPVVAFTFSKRRCDDNAAML Run BLAST on NCBI mRNA from alignment at Sc0000004:7393518..7401864+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96997_cuf0 ID=transcript:BL96997_cuf0|Name=transcript:BL96997_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=8347bp|location=Sequence derived from alignment at Sc0000004:7393518..7401864+ (Branchiostoma lanceolatum)
CCCCACGGAGGCGACGCGGGGGAGCTCCACTAACTACCCCTTCTGGCCGG
GGGGGATGGACGAGCCTGACCTGGGGACCGTTCTGGGGGAGGAGGGGGGA
GGGGCTGTCGATTTTCAGACAGGTGATTTCAACAACATCTTACGAACTCA
CTTTGAGATGTGTTGAAAAAAGCAACTTTCTGACTACTGTTTAACTGAAG
TAGACGTTTGGCATCCCATTCTCTATTGGTTACAGGGTTTGGCAGCAGGG
AAAAGGTTGATACATTCAACTGGTTTATTGGTAGATTTCTTTGCAGCCAT
GACTTAAATTGGAGCTCATTTCATTTCATCATCATTAAGTTAAGGTTTGT
AAAGAACCTGGAGGTACTGACTTTGGATCCTGACAGGTCCCGATGTTGTG
CCCTTGGAAAGGCACTTAACACCAACTGCCTCATTCAACTCAGGTGATAA
TAAGCACCCTGTGCTTGTTAAAGTTTTGTGTTTGAATTGAATGTTTGTTG
TTTTGTCTGAGGACTCAGGCCAACAATTGTTTTTATTCTTCACAGACCTC
CTCTCCTGTCCACCTGGGTTTGAACACGGAGTTGACTTCAAGAAACTGAA
GAAGAAAGAAGAACAGTTGGGTAAGGTTGACTTCTGACTCTTCCTTGTTC
AGTGTCATCAAAAATGTAAAGATCTGTTTCAACTTGATATTCAGTGTCAA
TATCAAAACTTCACTCCATCTGTATTGTAGTTGTCCTTGTCAGCAAGGTT
AGCCCTTTGTAATAGCCACAGGCTAGTCGGTCAGCCCTGGCTGTGTGTCC
TGAACGGCCAAACTAATAAATAAAAAAAAAGGCGGACCTCGAGTGTAAGA
GTCATCCGGCAGCTCGCTGCAAGCATCCCAACCAGAACCAGCACGTCTCC
CTCGAATTGGTGCCGCTGGAGAAGGCGGATGCCCAAAGTGTGTGGGTCTC
AGATTCGCAACCTGTCATCCACCTTAAACAAATTCACGCGAAGGCTACCG
TGTCAATGCATTGACACGGTCACCATACTCGATCTGTATTTGTATCTGTA
CTATGTATCTGTACCATGTATCTGTACTATGTATCTGTACTATGTATCTG
TACTATGTATCTGTACTATGTATCTGTACTATGTATCTGTACTATGTATC
TGAATACGAATAAAGATAATACGAGTGGTTGCCAGAAAGAATACAATGCT
AAGCTTTCTTCCAACACTAATGTATTCACGGATCAAATTTTCAAAGACCA
CGATCAATAATGACAAAAATTTGATCCGTGAATACCTTAGTGTTGGAAGA
AAGTTTAGCACTGTATTATGATTACTACCAACAAAGATGAGCTTCCATGA
TAAATAAATAAACTGTTTTAAAGCAAACCAAACAAGTAAAGATATTGCGA
TCTCTTGTCACAGTCATCTCATAACCTTAACTTAAATAATTTCAGCCAGT
TTAGATGTAGAACGTCCTGATTCATTATTATCCCACTGCCATATTGTGTG
AAGCTCCTTAATGAAATGTGAACATCCAACACTCTGTAGAGCTGTTTCTC
ATATGTATCTTTAAAGTGCAAGTAAGATTACGAGCCTTATTGTACATGTA
CAATGCAATCTAGCCCTCGGGATTCAAAGGTGGATTTTTTGGTGTATGTA
TGATGTATGACAAACCAGTTTACTTACTTACTTTAACCTAACTGTTTGTT
AACACATAGGTATTCCTACTTTCCCAGTTGAACCAAGGAGGTTAAATACA
GAGGGTATTTAACCTCCTTGGTTGAACACACGTCTGGAATGATTGTTGTT
CTGATGAAGTTTGGTTCTTTTGCAGCCAAGATGGCCGCCCCTTCCCAGCA
TGCCCCAAACGTGCTGAACCTGGCGGACATCCTTGCAGGGGATGATGGGA
TGGACTGGAGTGAAGATGAGGAGGAGGAGGAGGAGGTGAGAGAACTGGTT
GCCAGGGAAACAACTGTGTCTTCAACGGAAAGATGGGACAGATTGTTGTC
TTACCTGTTTCAGCTTTCACCTGACTCTTACATGATTGTGTAGAAGTTTG
ATTTATTAACCTTCTTCCTACTGATACATCAAGGAGTCAGTGTGTAGTTG
GAGAAAAGATGCCCCCTTAGCAGGGAGAAGGTTAAGATACTAGATCTGTT
GGTGTTGGAATGTTTGATTGGGATCATTCAGGATGTATTGTATGTTATGA
ACAAAACACCTTTTTGGCTGCAATATACTCTTTTGTTCTCATCCTTGTAT
TTTTCTCTTTGTGTAATTTGAATATACAAAATTTCTGTATGTAAAAATAT
GATGGTGTCAGAGCTCAACGGCCAAAAAAGCCTAGAAAAGTAGTCAGTAG
GACTGGTGTATTTCATTTAATTAAGTTTGATATCCTACTTTCCAACAGGA
GGAGAAAGAGGCAAAGGAGCTGCCGACCCTACAGAGGGCCGACAGTCTGG
AGAACATGCTACCTCAGGTAGGGATGTCTGAGCTGTTCTAGTTCTGCATT
CTTCTTATTTGCTTATTTCTATGATTCATTTTGTAAGTTTTGGGGTCAAT
GAGATTTTACTGGAAAGCTATCTTGCATGCTTTTGTTCTCAGGAAAGCCA
TGCTGTTCAGGAGTCCAGCACTCCCAGTCCCCATTTAAATATTGCTTTTT
ATTTCAAAATGTTGGTGTTCTTTACTTAAATTACAAAACCCACTAATAAT
TAAAAAGGTGGGACTTTTCATCAGCCACTGCCTCCAAAGAAGAAGTCAAA
CCCCTCAGTAATGTTGTATGTAGGAATATTAGCTAGAAGCATAGAATAGA
CCCTTGTTACGCTTGTTACATTTCTTACTGTTTGTATCATTGCAATTAGC
CTACGGGCAGGAATTGGCGACTAAAACTTCCATTGTTTTTTCTTCAGGAG
AGCCAGGCTGCGGAGGTGCCCATCCCCCCACCCCAGGGGAAGCCCCCCCA
GGAGGAGCAGTGGGCGGTGAAGGTGGACATCAGCACGCCCGTGTCCGACT
TCCACAAGAGGATCCCCAACCCCGCCTACCAGGTCAGACAACCGGGTTTA
TGATATATAGAAGAACTTTATGTTTACTTCTGGTACAGTGCTAAACTTTC
TTCCAACACAAGGGTATACATGGATCAAATTTTCAATGACCACTGTCGCC
TTCTTCAGGATCAAGGATATGTACTTGTCTTTTCATTTTCTTCCACTAGA
ATACAGCACAGGGTTTGTATATGGGACATTTACCTTTACCTACATGAACA
CTGAACTGTAGAACGACACCTCGTCCTAAGGACTGCAACACTTTCTTCTA
GAATTTAGCTTTAAAGAACGGTTGCAGTCAGATATGCAAAGACTAGGTGT
AACAGACCGTTCGGTGTAATATGACCAGCTGCTGCCGCGCCGCGTGCCTG
CGAAGCTGGTGTGTTATGCCTAATGGCGGTTATACCGGCTATATAGATAC
AAATACAGATACAGATAATGTGGCCAGCAACAACCAAGTTTAAAACTGCA
TGTACATTGTACATCCATTTCAGAACTGTGATTTTGTTTGTTGTTTGTTT
ATTTGTTTGTTTGTTTTTAGTGGCCGTTTGAGCTGGACGTGTTCCAGAAG
CAGGCGATTCTGCACCTGGAGAACCACGAGAGCGTGTTCGTGGCCGCGCA
CACCTCCGCGGGGAAAACCGTGGTGGCCGAGTACGCCATCGCGCTGTCGC
AGAAGCACGTCACCAGGTACGGACGCGCCGAGTCTGTTTGTAGAAACATC
CTGTGGAGACTGGAAGTTTTAAAGTTCATCTGTGTTGGTAGAAGTCATTC
TAAAGCAAAGTTGAACTGGAAATGTCAAGGAATGAGCCATCCACAGATAG
ATTTGGATTTGGGATTTTATTGGAATTGCAACAGTTCAATACAGGTGGGA
CACAGGCAGCTATTGCTGATGTCGTGACCAACACACATAATGTACCCGTT
TTTTACACTTGGGTGGAGTGGGGAAAGTCGTTTTCCCAAGGGCACAAGAT
TGGTGGCGTTGGGATTCGAACCCGGGACCTCTGGGTTCTGGGTCGAAAAT
CCTGCCGTTATGCCAAACGACCCCACGACCTCATAGAACATGTGACATGG
TAAGCAGTGGATCAAAAGTTGCAGAAAGGCTATGGTGCCCCCCGTCTCAG
ACTGCTGAAGGATTGTTATAGAGTTCTGATGTAGATGGCTTCTTTTATTC
CTGTTATTGTCATTATTTATCTATGTTGAACTGCAAGACTAACATGAAAA
CAGAGTCTGTACATTTTTTTCAAAGTTTGCTCAGTGCAAGGCCAAGTAGC
CACTTGGCACTGAACTAATTAGGACTAGTACGACATCTCCTCTCCCTAAG
TCAGAAACATCATATATAATTTAGACCAGCTCAACTCAGCCTGCTATTGG
TCCATTTGAATGTAACACCACCTGTTATTAGTCCATTCACATGAAGCTAT
TGGCGCATGTACATTCAGATGTAGCACTGCCTGCTATTGGTCCATTCAAA
TGTGACACCACCTGTTATTAGTCCATTCAGATGTAACACTGCCTGCTATT
GGTCCATTAATGTGACACCACCTGTTATTAGTCCATTCAGATGTAACACT
GCCTGCTATTGGTCCATTAATGTGACACCACCTGTTATTAGTCCATTCAG
ATGTAACACTGCCTGCTATTGGTCCATTAATGTGACACCACCTGTTATTA
GTCCATTCAGATGTAACACTGCCTGCTATTGGTCCATTAATGTGACACCA
CCTGTTATTAGTCCATTCAGATGTAACACTGCCTGCTATTGGTCCATTAA
TGTGACACCACCTGTTATTAGTCCATTCAGATGTAACACTGCCGGCTATT
GGTCCCTTCCAGGACGGTTTACACCTCACCTATCAAGGCCCTGTCCAATC
AGAAGTTCCGGGACTTTAAGCAGACGTTTGAAGATGTCGGTCTGCTGACG
GGAGACGTCCAGCTGCGACCTGAGGCCGCCTGCCTCATCATGACCACCGA
GATCCTCAGGTACGCACCCTGACACCTGAACCCTGACCCTTTCTCATCAT
GACCACAGAGATCCTCAGGTATGCACCCTGAACCCTAATCCCTGAACCCT
GACCCTGCCTCATCATGACCACCGAGATCCTCAGGTATGGACCCTGAACC
CTGACCCTGCCTCATCATGACCACCGAGATCCTCAGGTACGCACCCTGAC
CCCTAACCCCTGAACCCTGACCCTGCCTCATCATGACCACTGAGATCCTC
AGGTTTGTTTTAACCCTTATCTAGAATAAAATGCTGCTTTTCTTTGAGAT
CAGGAGAAAAAGAGAAGAGGTAAGGGTCATGTTAATCGCAGAAGTCTCTC
AAAAGAGGACAGGGTTGGGGCAGCATGTATGTCAGGTGGTGGACTGCTCC
GGATATTGGGTCCACGGTATGCATCTAGGCCTACGGCTTGTTTATGTTTA
CTTATATCCTGTTGTTTGTTGATTTGTTTACCTACAGGTCGATGTTGTAC
AACGGGTCGGACGTCATCCGAGACCTGGAGTGGGTCATATTCGACGAGGT
GCATTACATCAATGACGCCGAGGTAAGGTCTCCCACCAGAGTTTCTTCTG
CAATTTTTTATGTAGGCAGCAAACACCCTCAGGCTGAAGGGGCTGCAATT
CCAACCAGAAAAGTTGGTACAACACCAGGAAATTTCATTCTTATGGTGAA
AAGCTGTTACCTGACACCTGTTGTGTGTAACCTGACACCTGTAGTGTGTA
ACCTGACACCTGTTGTGTGTGTTACAGAGGGGAGTTGTGTGGGAGGAGGT
GCTGATCATGTTACCTGAACACGTGAACATCATCCTGCTCAGTGCCACGG
TGCCCAACACCATGGAGTTTGCAGACTGGATCGGGTAAATCAACCACTTC
TTCCTTTATCTGCTTGGTATCTGAATAAGACCTGATATACCTGACCTTCT
TTTGACATAAAGGTTTGTACACAGAGCAGTGAGTGAAATCTTTACAGCAT
TTCTGGTATCTGAACAGACTTCATATAGATGTAGTTATGATTACCTCCAA
AGGCAACTTTGTTCTCTCTCTGCGTCATGGTCTTATTTCTCATTTGACGG
CTAGAAAGTCAGCATTTTCAACTCAGGTTCATTTGCTTTTACTACTCTTT
TTATTTGATTCAATGGAGAAAAGTAAAGATGTTGAAAATGGGCCAATTTA
GCCTGATGTAATGTGAAGAAACCTTACAAACATTACCGCATGAGGTTTTT
GGTTGAAAGCTGTATTTCTTTTGTATTCAAGAAGTAAGAAAAAGTTTGAA
ATAGGCCACAAATACATTGTAGTAAGTAAAGTTTCTGGTAGAGGAAAGTA
ATGTATCTCCAACAAGCAATTCCATAAGTAAGCAAAGATTACATTGTGTT
CCTAGTTACTTGTATACCTATAACAGCTTACAGATTCAGTAGTTAAAGAT
GTTGTGTTGTGTCCCCAGTTTCTCGTATAAGAACTTGCAGAAATAAGTAA
TATTAAAGCTATTTTGTTGTGTTTCCAGGAGGACTAAGAAGAAGAAGATC
TACGTGATAAGCACGCTAAAGCGGCCGGTTCCCCTGGAGCATTTCCTGTA
CACGGGGAACAGCAAACAGACCAGCAAGGAACGCTTCCTCATCGTGGACT
CTGCCAGGAACTTCCTCACTAAGGGGTCTGTCTGTTTGTCTGTTTGTTTG
TCTGTCTGTCTGTCCGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTC
TGTTTGAGCCTTGTGCTGTCTGATTTTCATTGAGGTCACCAGTAGAGATG
CATACCTTCCTCACTAAGGGGTCTGTCTGTTTGTCTGTTTGTTTGTCTGT
CTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCT
GTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGT
CTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCT
GTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCCCTTGTCCTGTCTGATTTT
CATTGAGGTCACCAGTAGAGATGCATACCTTCCTCACTAAGGGGTCCATT
TGTTTGTTTGTCTGATTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGAGCC
TTGATATATTCATGGCTAACTCAAATCAGCTTAATTGCTGCAGCTATTCA
ATTTTCATTTATGTCATGAGGGAAGAGGTTACTATTCCTCAATAGTTAAC
AAAATCATAGGGAAAAAGGTCAGACAAAGTATGAGAAAGATGCAAATCTG
AATCTTTGTTATAATATTATGTAAACTCTACATTTATTGACAAGAATTTG
GAGTCCTCATACCTCAATGAAATGAGTTTCTGTGAATTTCTTGTTTGATT
CAAGATTGTGAATTTCTCACTACTTCGGTGTATGCATTTTCAAACTGGGT
TCCATAGGGCCAGAGATGTGTATAGTAGTCCACTGTTTTCTGCTGCTGCA
GTAGTTGAAACATGTGTATACAGCAGGAACTGAAGACAGGAAATGACTGT
TAGTAGGACTACTTTAATAACCTTTCCCCCCCCCACAGGTACTATGCTGC
GATCGATGCTAAGAAAGCGCGGGCCTCCAAGTCTTCCTCCGGTTACGGAG
CCAAGGGCACCAGAGGAGGCGACCCCAGACAGGTGCGGACCGGCAGTTTT
ATGGCTTTTCATTTTGACAGAGGCTACTGTCAATAAGAATTTGCCCTCCC
CCCTATTGAGGCTTTTTGATAAGGATTTTTTCCCAGCTAAATGAAGATAG
ATCAAGATCATAACTTTGTATAGAAAAAACGGTGTGTTCGTCCAGTAATC
AAATTATCATGTTGGAAGTCAAATAATAGATGAACTTGAAATATTAAGAT
TTTTAAGAATTTGCTTATCAATGAGCTAAAGGTCAGGCAGCCTGTGCCAT
ACAGTTCGCAGATAATCTTCAAGTAGTGGTACAATTCAAAAGAAACTTAG
GATATCAGAAATGTGGGAAACTTTGAGAAACTTGGAAACAATGGTTAGCT
TTTTGTCAGTTATATGTAACAAGTCAACCCTAACACAGAAAAACATCTGA
AATGTAGAACAGTTTTATAGTGTTATGCAAATTTGACTTGAACTTATCAT
AATGTGACTTAAAGCCTGTACCTCACCTGTTGTCTCACCTGTTGTCTCAC
CTGTGTCTCACCTGTTGTCTCACCTGCATCCCCAGGAGAAGAACGTGTGG
CTGTCGATCATCCAGGCGATCCAGCGCGATGACAAGCTACCCGTCGTCGC
CTTCACGTTCTCCAAGCGGCGCTGCGACGACAACGCCGCCATGCTGA Coding sequence (CDS) from alignment at Sc0000004:7393518..7401864+ >transcript:BL96997_cuf0 ID=transcript:BL96997_cuf0|Name=transcript:BL96997_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1344bp|location=Sequence derived from alignment at Sc0000004:7393518..7401864+ (Branchiostoma lanceolatum)
CCCACGGAGGCGACGCGGGGGAGCTCCACTAACTACCCCTTCTGGCCGGG
GGGGATGGACGAGCCTGACCTGGGGACCGTTCTGGGGGAGGAGGGGGGAG
GGGCTGTCGATTTTCAGACAGACCTCCTCTCCTGTCCACCTGGGTTTGAA
CACGGAGTTGACTTCAAGAAACTGAAGAAGAAAGAAGAACAGTTGGCCAA
GATGGCCGCCCCTTCCCAGCATGCCCCAAACGTGCTGAACCTGGCGGACA
TCCTTGCAGGGGATGATGGGATGGACTGGAGTGAAGATGAGGAGGAGGAG
GAGGAGGAGAAAGAGGCAAAGGAGCTGCCGACCCTACAGAGGGCCGACAG
TCTGGAGAACATGCTACCTCAGGAGAGCCAGGCTGCGGAGGTGCCCATCC
CCCCACCCCAGGGGAAGCCCCCCCAGGAGGAGCAGTGGGCGGTGAAGGTG
GACATCAGCACGCCCGTGTCCGACTTCCACAAGAGGATCCCCAACCCCGC
CTACCAGTGGCCGTTTGAGCTGGACGTGTTCCAGAAGCAGGCGATTCTGC
ACCTGGAGAACCACGAGAGCGTGTTCGTGGCCGCGCACACCTCCGCGGGG
AAAACCGTGGTGGCCGAGTACGCCATCGCGCTGTCGCAGAAGCACGTCAC
CAGGACGGTTTACACCTCACCTATCAAGGCCCTGTCCAATCAGAAGTTCC
GGGACTTTAAGCAGACGTTTGAAGATGTCGGTCTGCTGACGGGAGACGTC
CAGCTGCGACCTGAGGCCGCCTGCCTCATCATGACCACCGAGATCCTCAG
GTCGATGTTGTACAACGGGTCGGACGTCATCCGAGACCTGGAGTGGGTCA
TATTCGACGAGGTGCATTACATCAATGACGCCGAGAGGGGAGTTGTGTGG
GAGGAGGTGCTGATCATGTTACCTGAACACGTGAACATCATCCTGCTCAG
TGCCACGGTGCCCAACACCATGGAGTTTGCAGACTGGATCGGGAGGACTA
AGAAGAAGAAGATCTACGTGATAAGCACGCTAAAGCGGCCGGTTCCCCTG
GAGCATTTCCTGTACACGGGGAACAGCAAACAGACCAGCAAGGAACGCTT
CCTCATCGTGGACTCTGCCAGGAACTTCCTCACTAAGGGGTACTATGCTG
CGATCGATGCTAAGAAAGCGCGGGCCTCCAAGTCTTCCTCCGGTTACGGA
GCCAAGGGCACCAGAGGAGGCGACCCCAGACAGGAGAAGAACGTGTGGCT
GTCGATCATCCAGGCGATCCAGCGCGATGACAAGCTACCCGTCGTCGCCT
TCACGTTCTCCAAGCGGCGCTGCGACGACAACGCCGCCATGCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000004 | genome | Sc0000004:7393518..7401864 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96997_cuf0 |
| Biotype | protein_coding |
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