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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97012_cuf6 >transcript:BL97012_cuf6-protein ID=transcript:BL97012_cuf6-protein|Name=transcript:BL97012_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=720bp
QTFTGCARSRFDLVFVLESSNKVTMPNFRLMKDFVKKYVQAFDIQPGTNR
IGVVQYGATVQEALSLAANNTLSDVLSTIDNLRHLGGGTFTQAALQHLKD
TSFTQKSGDRMAYPNVAVLVTVGKPFDSPAAVAKELRDTGVHLYAVGVGS
GLGNTTLEDITGYQPFAFQLNNFTDLENDAQRLQVIQAVCRGRDECASSP
CQNGGACVDGDYSYQCVCQKDFVGSNCERCGLPTTGVNQMERTCTVWNGR
QILTFDHAAIDLTGSCRYTLVRDKVTYGNATHRNTTQTNFNIELEWTYMS
MDGNSAPMMAVGSGSSNPGDTLVKIDAGSLNLPAEYRNSSHLRTRVHVDV
FGQRVTLMEGPKALYNNLTVTPPFTTKDIHIHYTGSLVQLTTTSDLVVTY
DGRQEVRVRIPSCYRGKTVGLCGNFNGNSSDDMALKDGRMSASVSDFGDS
WKVGNRSCPATVDVSKLNCSAAKNQSGTNDTCGLILSSTGPFSRCHAVLP
PREYYESCIFDTCQRSNGSMNIKMTNSSRGLNATGSDKEEKKMCSSMETY
ARLCRNAGVLVGDWRKHNTCKMKCPANSNYSACMPFRQPTCLNQNVTREC
IRQDFMSLLPSFTAIRETCVEGCQCQSGYVQSGLECVLPEDCGCTYKGVY
WPKGAMFGVKDKRQCECKGNNTVVCQPVVCAQWELVDGSYRCTCVGQATC
LAVASFTVNVTLAASRPFTP Run BLAST on NCBI mRNA from alignment at Sc0000025:1334046..1339543+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97012_cuf6 ID=transcript:BL97012_cuf6|Name=transcript:BL97012_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=5498bp|location=Sequence derived from alignment at Sc0000025:1334046..1339543+ (Branchiostoma lanceolatum)
CAGACATGTAGGGATGAAATAGTGATATTGGTTGTTCTAGGGGTGCTGAC
AGTGATGGTTGTGGTTACGCTCCTACTTTTTTCTGCTTGGTGATATTGAG
TACTTGAAGTACATTAAGGTACAAGGTGCAAGGACCAAGGTGGCAGTCTT
AAGATAACAACAGGAGCATAGTGTGAACTGAACTATTGGTGGTAGTCCTG
AATTGATAAAGGTGGAGATGGCGGATTTGGAGATGGCAGTATTGGTGGCA
TTGGTGACAGGGGTCTACACACATCAAGCATTGTGGAGGGACTGCAGTTG
GTAATTATCTTCTAATTATATCATTTTTACTGATTCAAGGCCTGTAGCAG
GCATTTAGAGATGGTGAAGGAGGACCTGTAACTGTATCTTTGAAGGGAAA
ATGTAAAATTGTAGAGGTGCTGAATATGGTGCTGAAAGTAGTGTTGTTGT
TTTAAACAAACCTTCCAGTGATGGTACTGTTATGTTTAAACTGCCAATAC
TTGTCTTAAACCCGTAGATATGTCTACCATATATACAAAGAAAGGTTTTA
AATGTCTTACCCTTTTTGATAAGTAAAAATGCTATTTATCCCGATTCGTC
TTGATATATTCAAAACATTTAATCACTTCATATTCAACTTCCCTCAGTTA
CCGGCTGTGCAAGATCTCGATTTGACCTTGTATTTGTCCTTGAGAGCTCC
AACAAGGTCACAATGCCAAACTTCAGACTCATGAAGGACTTTGTCAAGAA
ATATGTCCAAGCTTTCGACATCCAGCCAGGTACAAATCGAATCGGGGTGG
TACAATACGGAGCTACAGTTCAGGAAGCGCTCTCATTGGCTGCGAACAAC
ACTCTGTCTGATGTTCTCTCAACCATCGACAACTTGAGACATCTGGGAGG
CGGTACCTTCACACAAGCTGCATTACAACATCTTAAAGACACAAGCTTCA
CACAGAAGAGTGGAGATCGGATGGCTTATCCCAACGTAGCCGTTCTTGTG
ACGGTCGGGAAACCGTTTGACTCTCCCGCTGCTGTTGCGAAGGAACTTCG
TGACACGGGAGTGCACTTGTATGCGGTCGGTGTAGGAAGCGGACTCGGAA
ATACCACACTGGAAGACATAACAGGGTATCAGCCGTTTGCTTTTCAGTTG
AACAACTTCACAGACCTGGAGAACGATGCACAGCGTCTACAGGTGATACA
AGCTGTCTGCCGTGGTGAGTCAATGAAAAACAAAGTCTATAGTCAGGTGC
AATTGGTCACAGTAACAGTTATGTTGTATTCTATGGGTACTTTCCTACAG
TCATTAGTCTGCCAAGTTTACCCCTCTTATGCTATGGTCCCAGTTACAAA
AAGGGGCCCAGTCAGGTAGTTCACAGGCTGTTTTTTGGCACTTTCGGGCG
TGACCCCTACTTGGCCCCTTGTGATACTGTGCGGCTGCCAGGCTATTTTG
AGGCCCAGCCGGGACCCCGAATCATTTTAGCCCGGACTTAAAATCAACAC
AGGAGCCGGTAACAAAAAGACGCCGTGAGCTAATTATGCGAACACCAGGA
GGTACGTAAATGGAACCATAGCATTAGACAGACATGAATAAAAGTAAATT
ACCCGGTGCCAACAAGCAAAGTCCAAAGTAAGAAACATGTACTTTCATTT
GTTAGTGACTTAGTCTTTTGAATGTGTATAGCTGTTATTGAACTTAGTAA
AAGAAGGCCCCCTCTAAGAGTCTCAAGATAAACTTACGACTGACACACGA
CTAATGACTGTTATATTATTAGGTCGTGATGAATGTGCGTCCAGCCCCTG
TCAGNATTGAACTTAGTAAAAGAAGGCCCCCTCTAAGAGTCTCAAGATAA
ACTTACGACTGACACACGACTAATGACTGTTGTATTATTAGGTCGTGATG
AATGTGCGTCCAGCCCATGTCAGAACGGAGGAGCATGTGTCGATGGAGAC
TACTCTTACCAGTGTGTTTGCCAAAAAGACTTCGTCGGTTCCAACTGCGA
GCGCTGTGGTTTACCCACAACAGGTTAGGTTGAAAAACTTTGACCATGAA
ATTTTATCCTCTTTTAGACAATTATCAATCCCTCTGGACAAAGATGCTTT
TTTTTAAAGATATTTCCTTTGTACCTACATCTATAGGATGAATGAATTGA
ATTTACAGGACTACTAGAATAAACAGTAAATGATACAATGTTGTGTAGTT
ACAAGTGCCGCACATTGAAGTTTTCTATAAACTTTTCGACATCTTTTTTA
GGTGTAAACCAAATGGAACGCACATGTACAGTATGGAACGGCCGCCAAAT
ATTGACCTTTGACCACGCCGCCATTGACCTCACTGGCAGTTGTCGATACA
CCTTGGTCCGTGACAAAGTCACCTACGGCAATGCCACTCATCGCAACACC
ACTCAGACAAACTTCAACATTGAGCTGGAGTGGACCTACATGTCCATGGA
TGGAAACAGTGCTCCAATGATGGCAGTTGGCTCCGGTAGTTCAAATCCTG
GAGACACGCTGGTCAAAATAGATGCGGGATCTCTGAATCTGCCAGCAGAG
TATCGAAACTCCAGCCATCTCCGCACAAGGGTACATGTAGATGTTTTCGG
CCAAAGAGTGACACTCATGGAAGGACCCAAAGCTTTGGTAAGCACTTGAT
TTTAATATGTATGAAAAGTTCGGGGCATATCAGTGGTTTCGAACCCGGGA
CCTCTCGGTCCTGGGCGAAACACCCTGCCGATTGCGCCACACGATGCCAC
CTTGAGCATGCTGCTTATATTTGCAAGGCAACAACAAATATTCTCAGCTG
TATTTTCCTTCCCCACCAGTACAACAACTTGACGGTGACCCCTCCCTTCA
CCACGAAAGACATCCACATCCACTACACCGGCAGTCTGGTGCAGCTCACC
ACGACCTCTGACCTGGTGGTGACGTACGACGGCAGACAAGAGGTCCGCGT
GAGGATTCCCAGCTGCTACAGGGGGAAGACTGTTGGGCTGTGTGGGAACT
TCAATGGCAACTCCAGTGACGATATGGCATTGAAGGATGGGAGAATGTCA
GCCTCTGTGTCTGACTTTGGTGACAGCTGGAAGGTTGGAAACCGCAGGTA
AAGAACTGCTTTAAACTTGGACAGTTTTATTTCAAATTTTAAAAGAAAAA
TTAGGGAGCCTTCTTTCATTTTGTTATCATTTGTCACTTTTATTGCGCAA
TGTTATTCTGTGTAAGGGTTGAATCCCCGGGAATCTTTGAAAAGTGCCAC
CAGGTGAATTATGTTCCTGGTTAAATAGATAAATTGAATTGAAGCCTGCG
TTTCAACTTGTTAATAGATGTACATGTTTACAGTACAGTCATTTCTTAAG
TTAGTACGCCTTTTTTCTGGCCTGTCAATTTCTGACATGTTAAGTGAGTT
TTTCCTTATACATTGTGTATAGTATAAGTGGAAGACAAAATTATTCTGAA
TTCGTTTGGGTAAAAAGAGCATTGATAATTACTGACACTTATTTGTTAAT
CATTATGGTTTGTAAACAACGGGCACCGTTTGTTGTTTGTCACTTTTGTT
ACTTCGTTACTGTTTCTTGTGATTTATAGACTTTAAAGGACTACCATGAG
AGAGAGAGGGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAAGAAA
AAGAGACCTAATTGTTGTAATTGTTGTGTTTTCTTTCTACAGTTGTCCAG
CGACAGTTGATGTGTCCAAACTCAACTGTAGCGCTGCAAAGAACCAATCA
GGGACAAACGACACATGTGGGCTCATCCTGTCTTCAACTGGACCCTTCTC
TCGCTGCCATGCAGTACTGCCCCCTAGGGAGTACTACGAGAGCTGCATCT
TTGACACATGTCAACGTAGTAATGGGTCAATGAACATCAAAATGACCAAC
TCTTCCAGGGGTTTGAATGCCACAGGCAGTGACAAAGAGGAGAAGAAGAT
GTGCTCCAGTATGGAGACATATGCAAGGCTGTGCCGTAATGCAGGCGTGC
TGGTTGGTGATTGGAGGAAGCACAATACCTGCAGTGAGTTTTCTTGAACA
AATAGAAGTAAAAAAATCAAACACAAAATATCACGATGACAAGAGTTAAG
TTGATGAATAAAGACGTTTTCCGATTTCAGTGGTCTTTTGCATGCTTTGC
CTATGAAGTATTCAAATAAAGATACATTCAGCTACTGTCTTGCAGGTTGA
AATTCAGTCTAGGGGATGCGAGAAGCCCTAGAAAAAAGGCTAAGAAAAGT
TAGATATACATTCTTTCATCATATTTTCTTCTCCAGAGATGAAATGCCCA
GCAAATAGCAACTACTCGGCCTGTATGCCATTTAGACAACCGACTTGCCT
GAATCAGAATGTGACGAGGGAGTGCATTCGTCAGGACTTCATGTCGCTGT
TGCCGTCGTTTACCGCAATACGCGAGACGTGTGTCGAAGGCTGCCAATGC
CAGAGTGGGTACGTGCAGAGTGGTCTGGAGTGTGTGCTCCCAGAGGATTG
TGGGTGCACCTACAAGGGCGTCTATTGGCCGGTGAGTATTATGGGTTAAA
ACAGTAATATCAAGGACGCTAAGAAAAACTGCTGATTGCTATTTTAGCCT
ACCTATATTATATATATATAGCGAAGGGAAATAATCTGATAATAAATGTA
CAAAAAATCAAGACTTCAAGGCCGGCATGCGATCCCGACCCAATCACAGG
ATTTCCTTGTAAGCTAGCAACCTAATAAATGTACCTTTAACTTTATTTTA
TGGCTGACTCAGTAATGACTTAAGAAGAATACAGTCGACAGACCTCCTTC
TGCGTTGTATCATTCTGGCTACACCTTTGGCCAGCCTTTATGTGAGTTTG
TTGGCTTGAGAACTAGGCTACATCACTGATGAAATATCTAAAACGAATGA
TATTTACATATTGTAATACAGTCACTGTGGTATAAATCTAATTAAAATCT
TATTCTTAGGCTACTTATTGTGCAACGTTAACATGTTTTATCATTGTGAT
GATACAGAAAGGAGCGATGTTTGGAGTGAAGGACAAGCGGCAGTGTGAAT
GTAAAGGCAACAACACAGTTGTCTGCCAGCCGGTGGTGTGTGCGCAGTGG
GAGCTGGTGGATGGAAGCTACAGGTGCACATGTGTGGGACAGGCCACATG
TTTAGGTATGTGTAATAACTCGGTGCTGCCGGTACAGTATCTGTAAATTC
ACCCAATGCATTCAAGTTGGTAGTAGTAGAACAATGGAGGCATTTGCTGT
TTTTTTAAGTTCATGATTGAAACGACCATTTGTAGTATTGTAATGCAATG
CAAGAACAATGATCTCCTTGGCAAGACCGAATGTATGTTTGCAGTGTAAC
GAGTTTTGTGTGAGAACCTTCATGACAACCACAGACAGACAAGTTGCTTT
AGAGCTTACACGACTTTTCTACTCCATTTTCCTTTCTCCAGCGGTTGCAA
GTTTCACTGTAAACGTCACCTTGGCGGCTAGTAGGCCGTTCACCCCAG Coding sequence (CDS) from alignment at Sc0000025:1334046..1339543+ >transcript:BL97012_cuf6 ID=transcript:BL97012_cuf6|Name=transcript:BL97012_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=2160bp|location=Sequence derived from alignment at Sc0000025:1334046..1339543+ (Branchiostoma lanceolatum)
CAGACATTTACCGGCTGTGCAAGATCTCGATTTGACCTTGTATTTGTCCT
TGAGAGCTCCAACAAGGTCACAATGCCAAACTTCAGACTCATGAAGGACT
TTGTCAAGAAATATGTCCAAGCTTTCGACATCCAGCCAGGTACAAATCGA
ATCGGGGTGGTACAATACGGAGCTACAGTTCAGGAAGCGCTCTCATTGGC
TGCGAACAACACTCTGTCTGATGTTCTCTCAACCATCGACAACTTGAGAC
ATCTGGGAGGCGGTACCTTCACACAAGCTGCATTACAACATCTTAAAGAC
ACAAGCTTCACACAGAAGAGTGGAGATCGGATGGCTTATCCCAACGTAGC
CGTTCTTGTGACGGTCGGGAAACCGTTTGACTCTCCCGCTGCTGTTGCGA
AGGAACTTCGTGACACGGGAGTGCACTTGTATGCGGTCGGTGTAGGAAGC
GGACTCGGAAATACCACACTGGAAGACATAACAGGGTATCAGCCGTTTGC
TTTTCAGTTGAACAACTTCACAGACCTGGAGAACGATGCACAGCGTCTAC
AGGTGATACAAGCTGTCTGCCGTGGTCGTGATGAATGTGCGTCCAGCCCA
TGTCAGAACGGAGGAGCATGTGTCGATGGAGACTACTCTTACCAGTGTGT
TTGCCAAAAAGACTTCGTCGGTTCCAACTGCGAGCGCTGTGGTTTACCCA
CAACAGGTGTAAACCAAATGGAACGCACATGTACAGTATGGAACGGCCGC
CAAATATTGACCTTTGACCACGCCGCCATTGACCTCACTGGCAGTTGTCG
ATACACCTTGGTCCGTGACAAAGTCACCTACGGCAATGCCACTCATCGCA
ACACCACTCAGACAAACTTCAACATTGAGCTGGAGTGGACCTACATGTCC
ATGGATGGAAACAGTGCTCCAATGATGGCAGTTGGCTCCGGTAGTTCAAA
TCCTGGAGACACGCTGGTCAAAATAGATGCGGGATCTCTGAATCTGCCAG
CAGAGTATCGAAACTCCAGCCATCTCCGCACAAGGGTACATGTAGATGTT
TTCGGCCAAAGAGTGACACTCATGGAAGGACCCAAAGCTTTGTACAACAA
CTTGACGGTGACCCCTCCCTTCACCACGAAAGACATCCACATCCACTACA
CCGGCAGTCTGGTGCAGCTCACCACGACCTCTGACCTGGTGGTGACGTAC
GACGGCAGACAAGAGGTCCGCGTGAGGATTCCCAGCTGCTACAGGGGGAA
GACTGTTGGGCTGTGTGGGAACTTCAATGGCAACTCCAGTGACGATATGG
CATTGAAGGATGGGAGAATGTCAGCCTCTGTGTCTGACTTTGGTGACAGC
TGGAAGGTTGGAAACCGCAGTTGTCCAGCGACAGTTGATGTGTCCAAACT
CAACTGTAGCGCTGCAAAGAACCAATCAGGGACAAACGACACATGTGGGC
TCATCCTGTCTTCAACTGGACCCTTCTCTCGCTGCCATGCAGTACTGCCC
CCTAGGGAGTACTACGAGAGCTGCATCTTTGACACATGTCAACGTAGTAA
TGGGTCAATGAACATCAAAATGACCAACTCTTCCAGGGGTTTGAATGCCA
CAGGCAGTGACAAAGAGGAGAAGAAGATGTGCTCCAGTATGGAGACATAT
GCAAGGCTGTGCCGTAATGCAGGCGTGCTGGTTGGTGATTGGAGGAAGCA
CAATACCTGCAAGATGAAATGCCCAGCAAATAGCAACTACTCGGCCTGTA
TGCCATTTAGACAACCGACTTGCCTGAATCAGAATGTGACGAGGGAGTGC
ATTCGTCAGGACTTCATGTCGCTGTTGCCGTCGTTTACCGCAATACGCGA
GACGTGTGTCGAAGGCTGCCAATGCCAGAGTGGGTACGTGCAGAGTGGTC
TGGAGTGTGTGCTCCCAGAGGATTGTGGGTGCACCTACAAGGGCGTCTAT
TGGCCGAAAGGAGCGATGTTTGGAGTGAAGGACAAGCGGCAGTGTGAATG
TAAAGGCAACAACACAGTTGTCTGCCAGCCGGTGGTGTGTGCGCAGTGGG
AGCTGGTGGATGGAAGCTACAGGTGCACATGTGTGGGACAGGCCACATGT
TTAGCGGTTGCAAGTTTCACTGTAAACGTCACCTTGGCGGCTAGTAGGCC
GTTCACCCCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000025 | genome | Sc0000025:1334046..1339543 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97012_cuf6 |
| Biotype | protein_coding |
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