transcript:BL97027_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97027_cuf1
Unique Nametranscript:BL97027_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97027_cuf1

>transcript:BL97027_cuf1-protein ID=transcript:BL97027_cuf1-protein|Name=transcript:BL97027_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=405bp
VFTEDDFDAVRTPTREDGDTVHTASTVVQPDINQGEGQYNIGLRLEGCAH
TTCRYGIETFRLGCRFWNEQEECWAGEGCKVSPDSTAKQTVCLCNHMTPF
GAEIVTTPNSIKFSTVFAKFSELKDNFAVFTTVFTTLGLYIILLLMVRRW
DNRDLSKWAVKEIPGSPGSDADESKYLMTIHTGHDWEAGTRSKVTFTLCG
DQYDTGVREVPQNERTFEMGGTDNFLLKTPQPLGDLISLKMSHDNSGEGQ
YASWYLQKVVITHLDTNKRTTFMCDDWLDEEYSAGKFSRTIHAQSDVDLS
FGRTFKTAIRTKFTDGHLWLSVGTRRPRSYFTRVQRLSCCLCLLYCKMIA
SAMWFRTASQAPSPSLFTIGPLDITTQQLWISVITTLQIFPVNFAIVQIF
RRCRP
Run BLAST on NCBI

mRNA from alignment at Sc0000077:897580..901353+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97027_cuf1 ID=transcript:BL97027_cuf1|Name=transcript:BL97027_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3774bp|location=Sequence derived from alignment at Sc0000077:897580..901353+ (Branchiostoma lanceolatum)
GTTTTCACGGAAGATGACTTCGACGCGGTTCGCACGCCTACCCGTGAAGA
TGGCGACACAGTGCACACCGCATCTACCGTAGTGCAGCCGGACATCAATC
AAGGCGAGGGCCAGTACAACATCGGCCTTAGGCTGGAAGGTACATTTTGA
ACCGAATTTTCTATTAATCTCTTTCTGTTTGTCTGCCCTTCAGCTGTGTT
GCACCTCTTAAGGTAGTATTCAGTACACGGAAAGCTACTTCGGTACGCGG
TACGACAACAGTTGTTTTCATTGATTGATATTCTGTTTTTGAACATTTCT
GTGTGTTCTGATCTGGGATTTCTCGCTCCAGGTTGCGCGCACACGACGTG
CCGGTATGGAATCGAGACCTTCCGCCTCGGCTGCCGTTTCTGGAACGAGC
AGGAGGAGTGCTGGGCAGGCGAGGGGTGCAAGGTCAGCATATCATAATGT
ACAAAACAGCTGAAGCTTGCTGTTCATCTAGTATATGGATTGTATTCTGT
GATGGTATCAAAACAGGTTAGAAGACTTGAATCACCAAGCCATTTGCTAT
GCTCGGTGAACAATGTCTTCATTGCTTTTTGTGTAGTTTAGCTGAACATC
GCTGTAAAAGCTCATTTGTATGCACTTATTTGTTCGCATGTATGTATGTA
TGTATGTATGTATGTATGTGTGTGTGTTTGTGTGTATGTATGTATGTATG
TGTGTGCGTATGTACATGTGTGTATGTATGTATGTATGTATGTGTGTATG
TATGTGTGTATGTATGTATGTATGTATGTATGTACATGTACGTATGTATG
TATGTATACATGTAGTAGACCTTACGAAAGTCGCTGTACTTTTGTTGTGT
CAATAAAGATTGATAGAGTTGCCTCCGTGAAATGGAGGTTTTGTAGTCAC
TCTGTGCTTGTGTGTTTGTGAACGGTTGGTCGTGTCCACATTTACGCAAT
AGGATAGTAGTTAATATTGCTATCTATGCTTCTTGCCTTGACTAGGTTAG
TCCAGACTCCACCGCCAAGCAGACGGTGTGCCTTTGCAACCACATGACAC
CTTTTGGAGCTGAAATAGTCACCACACCGAACAGCATCAAATTCAGCACG
GTGTTCGCCAAGTTCTCGGAACTGAAGGACAACTTTGCGGTGTTCACCAC
TGTCTTCACCACGCTCGGCCTGTACATCATCCTGCTGTTGATGGTCCGTA
GGTGGGACAACCGGGATCTTAGCAAGGTGAGTTCGGATTATTTATTTAAT
TGGTTATTTTGTAATAGTTTTTCAAAGTTGGTCATTCATTAAATCAAGCA
CACTACACTTTGCAACTGGCTGGTACATAGGACATTCCTTTCAAGTAAAT
ACTCGTAAGTCTATGATCAATGTTGCAATAGAGATCAATTAATAGAGCCC
AAAACAGTTCTTCTTACGAATTTGTACTTTATGCTTCAGTGGGCAGTGAA
AGAGATCCCCGGCAGTCCCGGAAGTGACGCAGATGAAAGCAAGTACCTGA
TGACCATCCATACAGGCCATGATTGGGAGGCTGGGACCAGGTCGAAGGTC
ACCTTTACCTTATGTGGTGACCAATACGACACGGGGGTCAGGGAGGTGCC
GCAGAATGAAAGGGTGAGTGACGTCCTTGCCGCCGTGCTGATTGGTTAAA
CAACATACACATACACATATTCAGATTTATCTGCAACATCCCGGTTTAAC
CATCCAAGATGGCGGACAATGCTTACGTCATAGTCACGTGAGTGCAAACA
CTCTATTTTGCCCCACCTCAACCATTTGCAGGTTTATTACGTTTATTGAA
TACAACCAATGTTAGACTAAGCATGAACTTTGCATCATGATGAAGGACAG
GGTTGCTAACACATTGAAGAAGTTAATTGGGGGCCCAAACCTACATCACT
TCTTGCTGACATCAGAAGCTATCTGTCACCAACAAATCAAGTCAATTGCG
TGTCCAGAATAAAAGATACAAAAACCGGAAGGTATGCTGAAGTACCAAGG
TCACACAGTAGGGGGCCCGCGCGTTTGCATTTTTAAATGCACGGTCGTAT
GTTGATGCACAATTTGTTGTTTGTCTCAGACGTTCGAGATGGGAGGTACG
GATAACTTCCTCCTGAAGACGCCGCAGCCCCTCGGAGACCTGATTAGTCT
GAAGATGTCTCACGACAACTCAGGGGAGGGGCAGTACGCGTCTTGGTATC
TGCAGAAAGTGGTCATCACCCACCTGGACACCAACAAGAGGTAAGCAACT
TTCTAAAGTAACTACGATGTTTTCATTTTTCAGATCAATACGAATGGACT
GGATGATAATTTTACGGAACACTTAAACAGACTATCCTACCCTTTCCCAT
GTAGGGAGAACAGCCTACGAGAAAACCTATCAGGGTCTTGATAGTGAATG
AATGTTAGAGGTGTAGTAGTAAGTGATACACGGTAACATAAACTTTTTAC
TAAAATCGACATAGCTATATTTCTGTATAATAGACAGCTTTCCTGCTTCC
CAAGCTGACGGATGTATGCAACCTATAGCTAGTAACTGTAAACAAAATAT
TGTTTGACAACAGCTGTGTTTCTTTAATTTACTGATTCTTTAACATCTCC
AGGACCACGTTCATGTGCGATGACTGGCTGGATGAGGAGTACTCCGCGGG
GAAGTTCAGCCGCACCATCCACGCGCAGAGTGACGTGGACCTCTCCTTCG
GCCGGACCTTCAAGACGGCCATCAGGACCAAGTTCACGGACGGGCACCTG
TGGCTGTCCGTCGGCACCCGCCGCCCCAGGAGCTACTTCACGCGCGTGCA
GGTCAGTCACGCAGGGTCAGGTTAGGTCACTACCGCAATCAAAGCGCCGC
GGGTGTCCTGACAGATTTCCGGGCGGTATGTCTAAAGACGTCGCGACAGC
GGCGTCCCGACAGCTGGAAATATCACCGCTGTCGCGAAAAGCAGGGACTA
AAGTGGGCTTTTTATTCATCACTTCTTCACCTTGTACTTGTAGTGCCTAG
TGGCGCGTCAGGTTATCCAGTTTCCCTGCTATATCTTTGCAGGAAGGTGT
TGCTAGCCCATCCCCCAGTGTCCGATGGCGTAACATGTACAATTGTGAGG
TGATGACCCCATACAAAGGATGAAGTTTTATTATAACTGATTTAAGCTAT
CTCTCTATTCACTGGATTTTCACCAATATGTCTTGGATGCCCGCATGCCT
ATTGTCAATAATTTAGGCAGTTGGTAACAACTTATCCTTGAGTCAAAGCC
ATTTTCGGAATGTTTGTTGTTTTTTACAGCGCCTGTCCTGCTGCCTGTGC
CTGCTGTACTGTAAGATGATCGCGAGTGCGATGTGGTTCCGAACGGCGAG
CCAGGCTCCGTCTCCGAGTCTCTTCACCATTGGACCGCTGGACGTAAGAA
ATCAGTCCAATCTATGATTTTCAGTTTTCTGTTTCAGAACAGTCAGCAAG
GCTAAGAGTGGGTTTGTGGTCTTTTTGATGTTGTGAAAGGCCATAATAAG
ATGCGGCAGTTTAAGTCTGCCTACAATATTTCCCTCCAAGCTCTCCCGCG
TCATCTTTGATATTGAACACAATTCTTTGGTACATTTATAACTAATACAG
TATGCATTTTACGGTTGTCTCTACATATGCGTTGGCTGTTTCGGTTAAGA
AGTTAAGAAGTGTCGCGTTTTGTTGCAGATAACCACTCAACAGCTGTGGA
TCAGCGTGATCACCACTCTTCAAATCTTCCCCGTTAACTTTGCGATCGTT
CAGATCTTTCGCCGCTGCCGACCC

Coding sequence (CDS) from alignment at Sc0000077:897580..901353+

>transcript:BL97027_cuf1 ID=transcript:BL97027_cuf1|Name=transcript:BL97027_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1215bp|location=Sequence derived from alignment at Sc0000077:897580..901353+ (Branchiostoma lanceolatum)
GTTTTCACGGAAGATGACTTCGACGCGGTTCGCACGCCTACCCGTGAAGA
TGGCGACACAGTGCACACCGCATCTACCGTAGTGCAGCCGGACATCAATC
AAGGCGAGGGCCAGTACAACATCGGCCTTAGGCTGGAAGGTTGCGCGCAC
ACGACGTGCCGGTATGGAATCGAGACCTTCCGCCTCGGCTGCCGTTTCTG
GAACGAGCAGGAGGAGTGCTGGGCAGGCGAGGGGTGCAAGGTTAGTCCAG
ACTCCACCGCCAAGCAGACGGTGTGCCTTTGCAACCACATGACACCTTTT
GGAGCTGAAATAGTCACCACACCGAACAGCATCAAATTCAGCACGGTGTT
CGCCAAGTTCTCGGAACTGAAGGACAACTTTGCGGTGTTCACCACTGTCT
TCACCACGCTCGGCCTGTACATCATCCTGCTGTTGATGGTCCGTAGGTGG
GACAACCGGGATCTTAGCAAGTGGGCAGTGAAAGAGATCCCCGGCAGTCC
CGGAAGTGACGCAGATGAAAGCAAGTACCTGATGACCATCCATACAGGCC
ATGATTGGGAGGCTGGGACCAGGTCGAAGGTCACCTTTACCTTATGTGGT
GACCAATACGACACGGGGGTCAGGGAGGTGCCGCAGAATGAAAGGACGTT
CGAGATGGGAGGTACGGATAACTTCCTCCTGAAGACGCCGCAGCCCCTCG
GAGACCTGATTAGTCTGAAGATGTCTCACGACAACTCAGGGGAGGGGCAG
TACGCGTCTTGGTATCTGCAGAAAGTGGTCATCACCCACCTGGACACCAA
CAAGAGGACCACGTTCATGTGCGATGACTGGCTGGATGAGGAGTACTCCG
CGGGGAAGTTCAGCCGCACCATCCACGCGCAGAGTGACGTGGACCTCTCC
TTCGGCCGGACCTTCAAGACGGCCATCAGGACCAAGTTCACGGACGGGCA
CCTGTGGCTGTCCGTCGGCACCCGCCGCCCCAGGAGCTACTTCACGCGCG
TGCAGCGCCTGTCCTGCTGCCTGTGCCTGCTGTACTGTAAGATGATCGCG
AGTGCGATGTGGTTCCGAACGGCGAGCCAGGCTCCGTCTCCGAGTCTCTT
CACCATTGGACCGCTGGACATAACCACTCAACAGCTGTGGATCAGCGTGA
TCACCACTCTTCAAATCTTCCCCGTTAACTTTGCGATCGTTCAGATCTTT
CGCCGCTGCCGACCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97027gene:BL97027Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97027_cuf1transcript:BL97027_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97027_cuf1-E1BL97027_cuf1-E1-1564476830-273747Branchiostoma lanceolatumexon
BL97027_cuf1-E2BL97027_cuf1-E2-1564476830-273749Branchiostoma lanceolatumexon
BL97027_cuf1-E3BL97027_cuf1-E3-1564476830-273751Branchiostoma lanceolatumexon
BL97027_cuf1-E4BL97027_cuf1-E4-1564476830-273753Branchiostoma lanceolatumexon
BL97027_cuf1-E5BL97027_cuf1-E5-1564476830-273755Branchiostoma lanceolatumexon
BL97027_cuf1-E6BL97027_cuf1-E6-1564476830-273757Branchiostoma lanceolatumexon
BL97027_cuf1-E7BL97027_cuf1-E7-1564476830-273759Branchiostoma lanceolatumexon
BL97027_cuf1-E8BL97027_cuf1-E8-1564476830-273761Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000077genomeSc0000077:897580..901353 +
Properties
Property NameValue
Transcript idBL97027_cuf1
Biotypeprotein_coding