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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97146_cuf1 >transcript:BL97146_cuf1-protein ID=transcript:BL97146_cuf1-protein|Name=transcript:BL97146_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=345bp
NNPSGILGIYERFENTTFWELFGFTDLRIRMLYPATDGEEVSSGLLSKLQ
YYYTVSDIQLEARCYCNLHGIYCKDNGTVCECQHNTAGPNCERCLPLYNN
RPWRRGSYLPRLPLPGGTANECQKCNCHDHANSCEYNATVGHGICLDCQH
NTTGVNCSECRAGFYPNISLPINHPDICITCSCKPLGVRDNDTSCDPLTG
QCHCKAGVTGLHCDQCETGTYGLLLEDGPGECKNCSCNTLGTLDSVDLCD
QTTGQCPCKNTTDTATCGTCKDKYWRFPENSNQECLPCLCDVGGSTSLNT
SCDSSTGQCDCRPNLQGLRCNQTQDGYYVPGLDFLLFEAEGENAE Run BLAST on NCBI mRNA from alignment at Sc0000147:148960..159103+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97146_cuf1 ID=transcript:BL97146_cuf1|Name=transcript:BL97146_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=10144bp|location=Sequence derived from alignment at Sc0000147:148960..159103+ (Branchiostoma lanceolatum)
CAACAATCCGTCTGGTATTTTAGGGATTTATGAACGGTTTGAGAACACCA
CCTTCTGGGAACTGTTTGGCTTCACAGACTTAAGAATACGGATGCTTTAT
CCGGCAACAGACGGGGAGGAGGTTTCATCAGGTCTACTCTCTAAGCTTCA
GTACTACTACACTGTCTCGGATATACAACTTGAAGCAAGGTAAGTAGACA
AAAACTTCAGTTTATAGATTTTAACAAATATATGGATTTGTTAGCCTGGT
ATCCAAACTTATTATACATGTAGTTGCCAAGTCTTTTAGTCCTCATAGTT
TATGCAAATAGCAAAGAGACTTGGCAGCTACAATAAGTTGGATACCGAAC
TACAAAATAGTCCTTGGATAAAAGAATAAAAAGATATATTATATAAGACA
CAGGGTTTTTAAAAATCAATAGAAAATATCCCTCCAGAAACCTGAGTATG
CAACAGATGTTACAGTAACTGTAAACTGCATTAGATGTTTATTCTTGCAT
AATATTGATCCTGAAAGAATTACGACAAGGCAAAAATACTTATCCTGGTA
GTGACATTTACATGTATGTACTTGTCTCAAAATCATTAGCTTGTACATTT
GTTTTGTTTCAAAGCATCCTCATTTGAGGGGAAAAATGATGCGTTTTCAT
GCAATGCGATGGTTGTGGGACGATTCAACGCACAGCTATGTTACGCTCTA
ATATGTGATTGTTACCGTCTATGAAAAGGAAACTGAATGCTGGGATGGCA
AAAATGTTTTCCAAAAAGTAGACAAAGTATTGTTGATTTAAGCGGTGTAA
TTTTATCGTAATGATCTTGTGAGTCAGGCCGCATTCAATACGTACGTCGA
GCCGCGCACAGTGCGTTGTAGCCTATTTCCCATGAAAATATGAGCTGGGA
TGCACTAGACATAGCCCTTCTTACACGACGAGAGAAGTGCACACAGTCAA
AAAGCTTATGAACAATATGAATGCATTTCTTATCCAAGTATGGTCTTCAG
ATGAGTTTGTTCAAAATTCACTCATTAAAACATCTTAGGGCACCCCCCGT
TATGTAATATATGTGGCATGATTTTATTCCTTTGAATGACCTATTGTCTA
TACTTTGTAGATGTTACTGCAACTTGCATGGCATTTACTGTAAGGATAAC
GGCACCGTGTGTGAGTGTCAACACAACACGGCGGGCCCCAACTGTGAGCG
CTGTCTCCCGCTATACAACAACAGGCCGTGGAGGAGGGGATCCTACTTAC
CTCGGCTACCATTGCCTGGAGGAACTGCAAATGAGTGTCAAAGTAAGCTA
AAATTTCTTTCTTTAATATAGAATGTCTGACTTGGATAACTCTTCGAAGA
AGCATGTTGTTTTTATGCTGGTGTTGTTACAAATCCATGAAATATGTACT
AGCTTATTTTTTGGTGTGTGTGTATGTTTTTGTGTGTGTGTATGCGTGCA
TTGCATGTTAACTATGCAAAATTGGATGGGACTGTTCAATGTGGTTTGTG
ACTGCAGGTGGTTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCC
TGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGC
CTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTG
CCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCT
GCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGC
TGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGG
CTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTG
GCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGT
GGCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGG
TGGCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCCTGCGCCAG
GTGGCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCCTGCGCCA
GGTGGCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCCTGCGCC
AGGTGGCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCCTGCGC
CAGGTGGCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCCTGCG
CCAGGTGGCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCCTGC
GCCAGGTGGCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCCTG
CGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCCT
GCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCC
TGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGC
CTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCTG
CCTGCGCCAGGTCCCTGCCTGCGCCAGGTGGCTGCCTGCGCCAGGTGGCT
GCCTCGCCAGGTGGTTGCCTGCGCCGGGTGGTTGCCTCGCCAGGTGGTTG
CCTCGCCAGGTGGTTGCCTGGCCTGGTTTGACTGTATTATCCTTTCTTCA
TAATGTTGTAACCAACACAGATTAACTTTCATGCTGATAGCATCAACTCC
TCTCTATTTTTTACATCAAAACCCGGATGCCATGCAGAATTAACATAACG
GTTGTCATTCCAGAATGTAACTGTCATGACCATGCAAACAGCTGTGAGTA
CAACGCCACTGTTGGCCATGGCATTTGTCTGGACTGTCAGCACAACACAA
CAGGAGTGAACTGTTCCGAATGTCGTGCCGGCTTCTACCCCAACATTTCA
CTACCGATCAACCATCCAGACATCTGCATAAGTAAGGCCACACCAATTTT
ATCTTTTTTGTACTTTTTGAAAAGCAGCAGTAAATTGGAATACTGTAAAT
GCATTTCAGTCCATGACTGTGGTTTTAATTTCGTGGTGGGTAGAAAATGG
AGTTTTCGTGGTGGTTTTAAGTTTGCGCTTGAGACAATAGTAGACAAGGG
GGTAGTAGAGCAAAAAGTTTTGTGGCAGTTTTGAGTTTGCAGCGAAGAGC
TTACCATGAAAACTGCAAACATAAAACCTCTGCCACGATATATGCATTTA
CAGTATTACCATTGATGAAACAGTCTGAGGGCTTTCAGTTCCTTGGTGCA
AACAGTAATGCAGATAGTGAACATGTATAATGTCTTGTTTGATAATCTTT
AGTTCAAAATGTTTGAGATTATCCAAGGAAATATATATTGGTGTAGCCAA
AAAAAGGTTTATTTGACTATTAAGAAAAACAAGGCTTAACTAGTATATAT
ATATTTCAATGACATTAATAACTGTTTGTTAGTAAGTGGTTACATTTTTG
TTACAGCAATATTGACTGTAAGAATAACAACTTGTCTGACTCATCATACC
TGGTGTATTTGCAAAGCCTGACCCACTACTCTACTTAGTTATACAATGAT
ATTTGGGTTGTGTAAATAAATGTTTTCTTGATATTTTTCTCTGCCTCAAC
TAACAATGTGCCCTATAACAATTTACATTGTCTTCAATGTACGTATAGCA
AATTCAGAAGTAAAAAGTAACTTTGCTAAGCAAGTTAGAGAGATTTCCAC
TGTTAAATCTTCTTTAAAACATCAACAAAAAAATTGAAACATAGTTTCAT
TGCTATTAGCTATAGCATGCTTCTCTTTGTAAGGATGTCAAGAATGTTAA
TATGCCATTCCCCAGCATGCAGCTGTAAGCCTTTGGGAGTGCGGGACAAC
GACACATCATGTGACCCGCTGACGGGACAGTGCCACTGTAAAGCGGGGGT
GACAGGACTCCACTGTGACCAGTGCGAAACAGGAACATACGGACTTCTAT
TGGAGGATGGCCCAGGGGAATGCAAAAGTAGGATTTCTCCTCGTCTCTTT
TCTATTGGTACTTTCATGGCCATTGCTCCAATGATCTCACACTAGTCTTG
TTTCTCCATTGAGAGCCTTTCAGTTTTAAGCTAGGTTTTTCTCTCTAGCT
CAATCGTTACACTGTTCAATTACCAGTCTCAAAGTCTTTCTACATCAAGT
GCTTCTTTCCACGGGCTGCCAAACTTAGCCCTTAAGCTGCCAGGTTTTTT
AGCCAAGTAAAAATCAAAAATGTTTGACCCCTGACCTCCCTCACGAAACC
CGCGAAACACCCGGCGGCGCTAACTCCCCTAACTTCCCGGCTTCGCGCGC
TACACGCACGCAAAGCTGTTTTGTTCTGGGGAATACCCTATCCCGGTTAT
AACCGGGTCCAGCACACAAGGCATATTTCTGTATCCCTAGTTAAGTCGGG
ACTGGCAGCTTAAGGGTTAAGAAGTCTCTCAATGACAACTGTTTTCCTTG
ACTGCCTACAACCTGAAAGCCTTCAAAAACCAATGTAGTAGTTACTGTAG
TTTACTGTAGTAGTAGTAGTAGAACCTTTATTTTACTTGGATAGCCCTGT
TGGCCTGTACAACATTACATGTATTGTATATTTACTGATATCTACATGTA
CTAGCATAATCATATCATCTTCCATCCACTTAGTTCAATGCCTAGAAGTG
ATCAGCTACATTGGCCTTGCATTGAACATTAGCGAGTGTTTTTAAAAACT
TTTAATTATCTTCTACCATTTTCTACCTTTACTAAGTTAATGCGAAGAAG
ATAAATCATGATTATAGATTCAACTTCATATCCTAGATTCAAACTGTATT
TTTTCATTCCTCATATTTTACTGATATTGGATTAAAACAGTAATACTCTG
CAATACTCGGCAGTCTCCTATAGGACTGTGTTGTCTGTTTCTCCTTCCTT
AAGCTTGCTTTTCCCCATTTTTAATGTTTATCAATAATCGTCTTCTGCTT
TGAATGATAGTAGCTACAATCATTTTCTTCTTCTATCCCTTAGTTTAACT
ATTGGACCTTGGGGTCACCACAGAAGATATGGCAACCAGTTTTCTACACT
CTTTCTGGTTTTCTGTTTTTCTTAGTGTTTCACTCTCAAGTGTCATGTCT
GTCAATTCTTTGATGTCATCCTCCCATCTTTTCTGTTGTCTACCTCTCTT
TCTTGATCCTTGGATGGTTAAATCTGCATGACAGTTTTTGCTGGTCCCGA
TGCTAGCTACAATCATAACAGAACTAAAAGTTTGTAGTTTTTGCGTTTCG
GCGCATGCGCGCCGAAACGCTTTGTCCTGGCTTTTACCTTCAAGCAAGGA
CCAGGGAAGCTTGGTTCAACACTGTGTCGCACACAATAAGACCTTATATG
GCAATACGTTCTCAAATCCTTGTATAGCCGTTGCCTTATATGGCAAGAGA
GCACGAAAAGGCAGGCACGCTAGATTTGCATGTGACACAGGACGGCGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTT
CATTAATAAATAAAGAAATATTTTATATTTGTTATTTTTAAATATTCATT
TAATATATACAAGGCCTTTGTCTTATGAACAGGACTTCATAGATTCCAAA
CCCGGCATTCGAATTTTTCTGTTCATTGTAATGGAAAATACCGTGCAGCG
GCTCCTATGCGCGGTAAGATGATTCTTGCAAAACACTCGCCACTAAACTT
CTATCCCCGATGTAAACAGAGGCTCTTGATGTTGTTTGCAAAACAGCGAT
TCTTTGTTACAGTAGCAAATGCTCCATTGTTCAGTATCGACTTCATTCAG
ACAACACGGACGTGGAAAGTGGCGCCCCTCGGCACAAAACTATGGGAATT
TTCATGAATTTTAGCAAAATTACCCAGGAAAATAAGGAAGAAATGTTGTA
AATGCGGAAACCAGAATAATACGGATGAGGTAGCTGTTGATTTGTTTGAC
ATTTGGTAGTCATTTTAGATAGAACCTTAGCTGTTATGAACTTCTATTTC
ACTTAATTACCATAGTGCTGATGATTCAATGGTGCTTTTTCAAATTTTAT
GTTTTATTGCGTGCCATGTACATAATTACATTGATAGCTTTTATAATGAG
CCTATTATACATTTTACAAATAAGTACAAGTTGTAGGCCAAGACCAGCTT
TTTCAAAAGCACTTAAGTTAAGTGACGTAACTTCAAAATTGCTTTCCCCA
ATCTGCCTTTCTCTATTAAAACAGTACTCATTTCCCAAAATGACAATTTT
TCTTATAGACTGAACAGCCCTTGAGTGACTTCCTCTGGCAGATTTTACTT
CAAGTAAAGGGAAAAGACAATTCACACTTATAAACGTAGCCGAAACGCCA
GCTTTTTTTAAAAGCTCTTGTTCCATTACAGACTGTTTTCTGGTACTGTA
AATGCATTTAAGTTCGCATGGTTTTTATTTGCGTTAAGGCAAAAATGGAG
TGTTCGTTGTGGTTTTAAGATTGTGGCAGTGCTATAGTTACATACTGCTA
CAGTATTGAACAAAAACGTTTGTGATGGTTTAAAGTTCTTGGTGAAAATA
TTATATGAACTAAATGAACGGACACAGACCATGAACCAGCTTTCGCCCTA
CTTCATGTTGTATGTTGTAGAAATTGTACATTGTTGTACCATAAATATGT
AATGATATATGTTGATAGAGTTATTAGGACTCAAATGATCTCTGTTATAT
TGTATCTGACCCTTCCCTTTTCCCTCATGACCTCAATGAAAAGCGGCCTG
CATGCCGATTTGAGCTTATCATGAATAAACAAAGGTTCAAACAAACAAAC
AAAAGGTCGCCGCGAAAACCGCGCACATAAAACCACCACAAACATTTCTG
CATTAATTTTTATAGTATTAATCTAAAAAGATGTGATTGAATTTTTTTTC
CAGACTGCAGCTGTAACACATTGGGAACACTAGACAGTGTGGACCTGTGT
GACCAGACTACAGGGCAGTGCCCATGTAAAAACACCACAGACACAGCTAC
ATGTGGCACATGTAAGGACAAGTACTGGAGGTTCCCTGAAAACTCAAACC
AGGTAAGGAGAACACTACCTATTCCAACAGATTTGGATAAGTGAAAATCT
ATTTGTCCCGAACTGACTTTTCTGTCTTCCTAAGTATTACATTCAATTTG
GTACTTGATATTAAGGAAAAGAAATTTTACAGGTTTGTTTGATTTTCGAT
CAGTCAATAATATCATGTTTCCCCTTGAAACAAGCTACTGTTCGTGACTT
TTCTATATTAAATCTCTTTGTTGAAATATTTCAATCTCCGTTTCTTTTTA
CATGTTACATGTAGTGTTCTGCTAACTTTAAGGCAATAGATTGATCATTA
TGCAAGAAACTTCAACTTCTAACTTTTGTGGCAATTATAGATTGATTGCT
ATTCAAGGAAACTTAATCTTTTAAATTTTCAGAGATTTGCTTAGCTCACT
TTTTATCCTTGAGGTGCACCATACAGGTATGAAATATAGGTATGCTAAAA
CAAAGCCTCTTGAGCCTAAAGCAATCATCAAAATTGCCACCAATCTATGT
CTGTTTAGGAGTGCCTGCCGTGCCTGTGTGATGTGGGGGGCTCCACCTCC
CTGAACACCAGCTGTGACAGCTCCACGGGCCAGTGTGACTGCCGACCCAA
CCTACAGGGCCTACGCTGCAACCAAACACAAGATGGCTACTACGTACCGG
GGTTGGATTTCCTCCTGTTTGAGGCAGAGGGCGAAAACGCGGAG Coding sequence (CDS) from alignment at Sc0000147:148960..159103+ >transcript:BL97146_cuf1 ID=transcript:BL97146_cuf1|Name=transcript:BL97146_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1035bp|location=Sequence derived from alignment at Sc0000147:148960..159103+ (Branchiostoma lanceolatum)
AACAATCCGTCTGGTATTTTAGGGATTTATGAACGGTTTGAGAACACCAC
CTTCTGGGAACTGTTTGGCTTCACAGACTTAAGAATACGGATGCTTTATC
CGGCAACAGACGGGGAGGAGGTTTCATCAGGTCTACTCTCTAAGCTTCAG
TACTACTACACTGTCTCGGATATACAACTTGAAGCAAGATGTTACTGCAA
CTTGCATGGCATTTACTGTAAGGATAACGGCACCGTGTGTGAGTGTCAAC
ACAACACGGCGGGCCCCAACTGTGAGCGCTGTCTCCCGCTATACAACAAC
AGGCCGTGGAGGAGGGGATCCTACTTACCTCGGCTACCATTGCCTGGAGG
AACTGCAAATGAGTGTCAAAAATGTAACTGTCATGACCATGCAAACAGCT
GTGAGTACAACGCCACTGTTGGCCATGGCATTTGTCTGGACTGTCAGCAC
AACACAACAGGAGTGAACTGTTCCGAATGTCGTGCCGGCTTCTACCCCAA
CATTTCACTACCGATCAACCATCCAGACATCTGCATAACATGCAGCTGTA
AGCCTTTGGGAGTGCGGGACAACGACACATCATGTGACCCGCTGACGGGA
CAGTGCCACTGTAAAGCGGGGGTGACAGGACTCCACTGTGACCAGTGCGA
AACAGGAACATACGGACTTCTATTGGAGGATGGCCCAGGGGAATGCAAAA
ACTGCAGCTGTAACACATTGGGAACACTAGACAGTGTGGACCTGTGTGAC
CAGACTACAGGGCAGTGCCCATGTAAAAACACCACAGACACAGCTACATG
TGGCACATGTAAGGACAAGTACTGGAGGTTCCCTGAAAACTCAAACCAGG
AGTGCCTGCCGTGCCTGTGTGATGTGGGGGGCTCCACCTCCCTGAACACC
AGCTGTGACAGCTCCACGGGCCAGTGTGACTGCCGACCCAACCTACAGGG
CCTACGCTGCAACCAAACACAAGATGGCTACTACGTACCGGGGTTGGATT
TCCTCCTGTTTGAGGCAGAGGGCGAAAACGCGGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000147 | genome | Sc0000147:148960..159103 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97146_cuf1 |
| Biotype | protein_coding |
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