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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97158_cuf1 >transcript:BL97158_cuf1-protein ID=transcript:BL97158_cuf1-protein|Name=transcript:BL97158_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=345bp
YDGPDRDGPLLTRLCGSTLREVTASGNQAFVVLTSDSVVTGNGFSARFST
ADPPPTCAPDEHTCWDGTCISDSLKCDGKNDCGDGSDEFLCSGNSTCGSG
PIQPVFPPSRVVGGEAAVPGSWPWQASLMTSYHFCGGSLIHPEWILTAAH
CFADDPDPSRYTVVLGKHYSYESNIAEERFSLSKVIVHEEYDGRLINKDL
TLLKLSRPATMGQYIQTVCLPQHPGDDPPVGTTCVTTGFGETLGTGNDEV
LKQARVPLVSNTDCNSAGSYNGEISDFMMCAGFPDGGHDACQGDSGGPLV
CPRQGQWYLNGVVSWGYGCARPGFPGVYARVTSMLDWVQQKIAAN Run BLAST on NCBI mRNA from alignment at Sc0000274:337722..343386+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97158_cuf1 ID=transcript:BL97158_cuf1|Name=transcript:BL97158_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=5665bp|location=Sequence derived from alignment at Sc0000274:337722..343386+ (Branchiostoma lanceolatum)
TTACGACGGCCCGGACAGGGACGGGCCACTGTTGACCAGACTGTGTGGCT
CCACCCTCCGCGAAGTCACCGCGTCCGGGAACCAGGCCTTCGTGGTTCTC
ACTAGCGATTCCGTCGTTACAGGGAACGGATTCTCCGCCAGGTTTTCGAC
TGCCGATCCTCCACGTAAGTATTCTGTGCCCTTCGCTCATTGCGTATGAC
ACCAAAATACAACATTATGATTGTATCAAATAATAATGATAATCAGCGTT
AACTACATATAATTGGAAGTTTTAATTTTTGTTTGCTTTTCTTGTTCATG
GCACAATAATCACCATACATATGGTTACTTGTAGACGGGAATTGTTGTAT
TTTATTGTAGCTGGTGACACAAGCACTTTAAATCATCTATCTACAATATC
GTTGTGCAATAAACTTTGACTTGATTTGACTGTAAATCACCGAAGTACAT
AATGTTACAACAATCATGGATAAATGGCCACCCTGAGGAAGTTTTTATTT
TCAAAAGCGTTGTGTCCTTGGGAAAAGCACGAAACACCACTTTCCTCACT
CCACCCAGGTATACACATGGGTGCCTGACTTCGGCTGGGGAGGTTAAAGA
CGATGGAAGGAGAGAGTTGGAGCGGCCTTTAAATAACGTGCCCTCGACAC
AGTGGATAATACCCCACTGCCCCGACAGACCTAAACAAGCAATAACTTTT
ACCTACCTACCTTCTTATCTTTCTCGTCCCAGCCACCTGCGCACCTGACG
AGCACACCTGCTGGGACGGCACCTGCATCAGCGACAGTCTGAAGTGTGAC
GGAAAGAACGATTGCGGCGACGGAAGTGACGAGTTCCTCTGCAGTACTTG
ACTTCTTTATCTTGCACTGCTTAGTAATAAGCTCATTCACACTTCCGAGT
ACGCATGCGTGGTGCCAGGAATCTAGGGTAATATGCCAAAGACCCCGAAG
ACACAAAAAACATGTCTGGATATTATAATGGCTTATGCAAATCGAGACAA
TGGTCGAGGCGGTCTGCTTACAAGTCAGGGTCCTTCACCTATGACATATT
GCCCACAATTCTTGTCGTCGCGTATGCGTACTGGTGTGAACGAGCTTGTA
GGCAACAGCCGGGTGTAGCGCGGGTACACTCGTCGTAGGCCCGCCAACCA
AGATTAGCACTCCGGGGAGTTGCCATGCAGGGAGTTAGCTAGCCCAGCCA
AACTGCCCGGGCTGTGCTGTAACTGTGCTACCGAACAAATTCGCTACCAA
GCCCCGCCAGAGTCTAACACCCAGGGTAAATCGTATAACGATATTACGAT
GAGTGATCCTTGTTCCTTACTAATTGAATCAATGAATAAGCAGAGTGAAC
GCTTCTATCTTAAGACAGACAAAAGTGAGTGCTCAGCTAACTTCTGACGC
TTACGTTTAAAAACAGGCGGTAATTCTACCTGCGGCTCCGGCCCCATCCA
GCCCGTCTTCCCGCCAAGCCGTGTTGTGGGCGGCGAAGCTGCTGTTCCCG
GCAGCTGGCCCTGGCAGGCGTCTCTCATGACCTCCTACCACTTCTGTGGC
GGGTCCCTCATCCACCCCGAATGGATCCTGACGGCCGCTCACTGCTTCGC
TGATGAGTAAGTCATATGTTACAGTATAGTCCAGTAATACTTAGGTCCCA
ATTGCTCCGGTGCCCGTATGTGGTGTAGTCCTGGTCGGGCTCCGAAGCCA
CAAATTTGTCCCGGTTGACTACTGGGTACCGGGAGTTACCTCCCGGTGTT
CGCATGATTAGCTCACGGCGTCTATTTGTTACCGTTTTTTTCCACGTTAA
AATGATTCGGGGTCCCGGCCGGGCCCAAAAGCAGCCCAACAGCCGCAGGG
TGCCCGACGGAGCCACGTAGGGGTCACGCCCGAAACTGCAAAAAATAGCT
AGTCAACTACCCGGCGGGGTTTTTCCAATGGAGACCTAAGTATCACAGGG
GTGCCTAAGTATTTATCCTAGCGGAATACTTACGAATCCTACGGAAGTCA
TATGATCCTCTACCATGAAACATATGAGTTTAACGGAATACATAGGATCC
TTACCATTTTGTAAGACTAGTGCCTGGTCACGTGACACGAACGGCAATTT
CAATATGGCTGCCTTGGTACTTCAATTTATTCCTACGATGTATTGACTTT
AAAGAACGTAAGTGATTATGCCATCCTGTTAAACACCTCAACCTGCACAA
ATGCTGGCTTCGTAGACGACATATCGATGCAATTATAATCTAGACCAACT
AGCAGGGCGAGCCTGCAAATATATCGCAGTAAGTGCAGACTTAATGCTTA
CAAAGAATGATGATGTTGTAATTAAATTTATTTTGTACTTTTATCTTTCC
CACAGTCCTGACCCAAGTCGGTACACCGTAGTTTTGGGCAAACACTATTC
GTACGAGTCCAACATAGCCGAAGAGCGGTTCTCTCTTTCCAAGGTTAGTC
GAATGATTACCTTGCTCTAAATCAAGGGCAACATTACTTGTATGTGAATT
TGTTATAGAAATTGTATAATGTCATCATCTGAATAACTGTGCAATGCACA
AAGTACTGAATATATAAAATGTTCAATGCGATATCATCCAACAACCAATA
TCTTCAATGCTCCTTTTTTGCTATTTTCTTCTTTAGTTAACCATAACTTC
TGCATTTTGCAATACCTTAAGAAAACAAGCCAGTAAAGTAATGTAAAGCG
GTCCATCCTCAAGATGAGGACTAAGCATGGAGCTTTTCTGTTAGCTAGTA
ATGCAACGCGGCTTCGCTACTTATCGCGTATTCAGCCAAGCATACTAGAC
CAGCCCTGCACTAGTACTTCTCAATAAGTGTATTTGGGTTCTTTTACATG
CAGAGGTTTGACGCTTGAGGCTTATGCCTGAAACTCCTTCATACATGAGG
TCGCCGGCTTCAGGTCAACATCCAAAATGACGAATGCAACCCCTGACAGC
ATGACCGAGCTGTCGCCGGCCCAAGGATCGAACTCCGGCCCACGGATCTA
CGGAATTCGATCCATATGGCCAAACAGTGGGACTGCAGCATCGCGTTCAC
CACGGGGGTGCTAGACTGGCACTCACCTCACCTCACCTCGTCCCATCCCC
ATCTTACACATTATAACTATGCCATTTGAACTCGTTGTTTAGGTTATAGT
TCACGAGGAGTACGACGGCAGGCTCATCAACAAGGACCTGACCCTGCTGA
AGCTGTCCCGCCCCGCTACCATGGGCCAGTACATCCAGACCGTCTGTCTG
CCTCAGCACCCCGGTGACGACCCACCTGTCGGCACCACGTGTGTCACCAC
TGGCTTTGGAGAGACCCTAGGTATAGCAAGTACTAGGACCTCACTGGGCT
GCACCAAATTGAGAAAGACATTTGCAAAGTGGCACACGCCGGCGCCAATT
GACACCATTTAATCATCTAAAATAACATTTCTTAATATTTCAAAAAAATT
CAAAAGGTTTGCAATTGACATAATGGGCGCAAGATGGCGCAAATCTGCGC
AATTACCGTAGATAGCTTTTAGCTGAATTTTGATCATTTTAAGTTAATGG
CGACGCTGCGGTTTTTAGATTATGTATTAGAATTTTACACGTCAGTGTGA
CCGCAAGAAAAAAATTCCGAAATTCGCAAAGTTGTCGCAATGATTTGGCG
CGATTAGGCGCAGTCCAGTGAAATACCCGCTTATGTTTTCGTTTCTATGT
GCAATACTATACGATGCTCAGAAAAGTTGTCGTATCCGATCTGATCCGTA
TCGGTGTATGATAGACTGTCTGACTAGAGCCGTCGTTCAATGCGCATCAT
TCATTCACGGTCTGTCATAATTTGGTATATACGAAGTTCTGAGTCAATTG
TGGTACTAAGTATGTTATGGGTTATTTCTTGTTGGTGTATCCATCTTACG
TCGCAGAAATGACGGTTGAGCTGACTCTAAATTTTATTCTATTTTGCTTG
CCATGTGAGGCGGAGTGATCCAATCTTACTGATTCAAGCTGCCCAGGGAC
CCCAGAACATAACATGGTGGTAGCGGTGGGATGCAATCTTACGTCTAGTG
ATTCAAGCTGCCTAGGTCACAATAATGTACCTGATGATACCTAATATGGT
GGCGGTTACTTATGCCTGATGAGAAAGTACTGTGGATGCTATTAACTTCT
ATCTGAAATATGTTACAAACAGCCCGGTCATAATCTGCTGTAACTGACTG
GACATGTTGCTTTTGTAAACTTTAAGGTACGGGTAACGATGAAGTTCTGA
AGCAGGCCCGCGTTCCCCTGGTCAGTAACACCGACTGTAACTCCGCTGGG
TCATACAACGGAGAGATTAGCGACTTCATGATGTGCGCTGGCTTTCCAGA
TGGCGGACACGATGCTTGTCAGGTAGGTAACGTTTAAAGCTAAGACATGA
CAGCTAGCATGGCATGTTGACGTAATCACTTGGAAGAGAGGATGTGTAAG
GCAACTTTGATTTGATTATATGGAGGACATTACTTCTTGTTTATTGTTTA
AAAGAGCTCCATTAGTGACAGTACATGGACATGATATTCCTTTCCTTTTC
ACTACTCCAGGAGTTATAAAATATGACATGCGTTCGCGCACCAATTTTCG
TGCGCCCTCAATAGTTTTTCACGATACAATGAATCGTACAAAGCGGTTGC
AAATTTGAAAAAAATAATGCTGTAAATTGCAAAAAAAATCAAAAGCGGAT
GCTAATGTCGTTGAACGATTGTCAATTTCAAAGTCAATAGTCAAAGTCAA
GAAAATGTGAAAAAACCAAACTGAAGAACCTATCGTTCAGTATGCCATAC
TATGTGTGTTAAGTCATTTGTTGAACCTTTCTCACTGCTTCGATTTCATA
ATGAAGCCGAACACGCCACATCAGTTTCGGGATTCCCAGAAACTGACATC
GATATGATAAAATCAAGAAAACCTTACTTGTAACCTGGCTAGATCACTCT
TATAGTAGCTTTCCCATTGGTCATAGACTAGAATAACCGGTAGATCTTTT
TAGCGTTTGTTTGATATACTTTTGTTTTCCAGGGTGACTCCGGTGGCCCA
CTGGTCTGCCCCCGCCAGGGTCAGTGGTACCTGAACGGTGTGGTGAGCTG
GGGTTACGGCTGCGCGCGTCCCGGCTTCCCCGGCGTGTACGCCCGGGTCA
CATCCATGTTGGACTGGGTCCAGCAGAAGATAGCTGCAAACTAGACGATA
TACAACACACCGACGCAGAAAAAAAAAGGTTTCAACAGCATGAAAATACT
TGTGTTAGTTAATCTTGAGTTTTCTTGATAAACGATAAACAATCTTTATT
AACACAACAAGAGTTCAGCGACTTTCGTAATGTCTTCTACAACTATGCAT
ACATACAAACAAACAAACAAACAAACGAACAAACAAACAAACAAGTGGAT
TAGTGGATACAAATGGATGAACAATAAATGACAAATTGTGTTTTGATTTC
AATATAACAGTCTCTCGACTACTGTGTTGTCTATATCCGATAATATGGAA
AGAAATATATCCTGGAACAACTTTGTTTTAAAAATCCATTGCATTTCGCA
TTTATAATAAAAACAGAAAAAAAGAAATAACTGAAAAGGCACATGAACTG
ATACAAACAGAAAGCACGGATTCCAAAGAAGCTTATACGTAAAGATAAAA
AAATTACAACGTAAA Coding sequence (CDS) from alignment at Sc0000274:337722..343386+ >transcript:BL97158_cuf1 ID=transcript:BL97158_cuf1|Name=transcript:BL97158_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1038bp|location=Sequence derived from alignment at Sc0000274:337722..343386+ (Branchiostoma lanceolatum)
TACGACGGCCCGGACAGGGACGGGCCACTGTTGACCAGACTGTGTGGCTC
CACCCTCCGCGAAGTCACCGCGTCCGGGAACCAGGCCTTCGTGGTTCTCA
CTAGCGATTCCGTCGTTACAGGGAACGGATTCTCCGCCAGGTTTTCGACT
GCCGATCCTCCACCCACCTGCGCACCTGACGAGCACACCTGCTGGGACGG
CACCTGCATCAGCGACAGTCTGAAGTGTGACGGAAAGAACGATTGCGGCG
ACGGAAGTGACGAGTTCCTCTGCAGCGGTAATTCTACCTGCGGCTCCGGC
CCCATCCAGCCCGTCTTCCCGCCAAGCCGTGTTGTGGGCGGCGAAGCTGC
TGTTCCCGGCAGCTGGCCCTGGCAGGCGTCTCTCATGACCTCCTACCACT
TCTGTGGCGGGTCCCTCATCCACCCCGAATGGATCCTGACGGCCGCTCAC
TGCTTCGCTGATGATCCTGACCCAAGTCGGTACACCGTAGTTTTGGGCAA
ACACTATTCGTACGAGTCCAACATAGCCGAAGAGCGGTTCTCTCTTTCCA
AGGTTATAGTTCACGAGGAGTACGACGGCAGGCTCATCAACAAGGACCTG
ACCCTGCTGAAGCTGTCCCGCCCCGCTACCATGGGCCAGTACATCCAGAC
CGTCTGTCTGCCTCAGCACCCCGGTGACGACCCACCTGTCGGCACCACGT
GTGTCACCACTGGCTTTGGAGAGACCCTAGGTACGGGTAACGATGAAGTT
CTGAAGCAGGCCCGCGTTCCCCTGGTCAGTAACACCGACTGTAACTCCGC
TGGGTCATACAACGGAGAGATTAGCGACTTCATGATGTGCGCTGGCTTTC
CAGATGGCGGACACGATGCTTGTCAGGGTGACTCCGGTGGCCCACTGGTC
TGCCCCCGCCAGGGTCAGTGGTACCTGAACGGTGTGGTGAGCTGGGGTTA
CGGCTGCGCGCGTCCCGGCTTCCCCGGCGTGTACGCCCGGGTCACATCCA
TGTTGGACTGGGTCCAGCAGAAGATAGCTGCAAACTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000274 | genome | Sc0000274:337722..343386 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97158_cuf1 |
| Biotype | protein_coding |
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