|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97194_cuf1 >transcript:BL97194_cuf1-protein ID=transcript:BL97194_cuf1-protein|Name=transcript:BL97194_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=607bp
ENYPGTFICSCDQGFELAEDKVSCQDIDECALQLTNCSQQCENTAGSFNC
ACQDGFTLAANGMDCEPDNPCSAGNDPGCDSEFGWCISNSLGTAECVCRS
GFVLSSDSVTCEDYDECSAGDHHCSQLCNNTASGYSCYCGEGYYTDEEND
HICLDIDECFEGTDNCTDLEVCGNDPGSFHCNCTQDAVLVGDTCVLVTTT
PMMTTKTTTVQTTSPSTTREPSTTATATTTPTTISTTAVAPSTAETTLSL
TTLPRTTTITTTTVAPSTTETTSPQTTKFSTTIDSTTTTTVTTLPPTTTL
SPTTTITTSTVAPPTTKTTTSRTSPESTTLSPTTNSPTTTTISTLPATTT
TTTNEVPSTVETTTSDSFPQSTMSTTLQRTTTSKTTNSPTTTTITTTSAP
STTDTTKSNSSPQTTSTTDSTTLSTTNPPTTTTTQKTVVTSTNPTTAPTS
SPKTTASTTSMLTTTTVQTSPRQTTKTTDATLFPTSIKPEATTSPTTPTT
NAQSTSASPSTTTTSPPQTTQTSSATTSPATITEPMKSTTTTTTPQSEAT
TSYQAPATTSPQPPNTLTEDPSALRPHEQNTLVLTITMTTEEFTAEVKMN
FKHRVAE Run BLAST on NCBI mRNA from alignment at Sc0000066:1309201..1313307- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97194_cuf1 ID=transcript:BL97194_cuf1|Name=transcript:BL97194_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4107bp|location=Sequence derived from alignment at Sc0000066:1309201..1313307- (Branchiostoma lanceolatum)
GTGAGAACTACCCCGGAACCTTCATCTGCTCCTGTGACCAGGGGTTCGAG
CTCGCAGAGGACAAAGTCTCGTGCCAAGGTTTGAAGCTTAGATATCTTGA
CTAAGAATAATGGCGTGGGTTCTTGACGTATTCCAGATAAGATTATCTGT
TTAAGATCCTTTTACATTGTAGGGATAACCATGGACAATTTCAAGTTCAC
TCCATTGCCAAAGGACTATTGCTGCGGAATGTATCCGTAGACAGGAGAGA
GCCTTAGCTTGGATGTAAGGCCAAGAGAATAAAACATCTGAGAAAAAAAG
AAACCATTTGACACTTTTCATATAATTGCTTTTTCTCGTTAGATCTGTGG
TATAGCGCCATTGTTCACTTGCTCATAATACTGCAGGCAGCACAACTTTT
GTGCTAAAAGAATACCTTAGTACGGAGAAGGTTACATACAACAAATAGTT
AAATAGATACTTCTTAGTGGCCACCAGTTGAGCTAGATTCATGTGCCCTT
TGTAATAAATACGTATTTTTCTTTCTTCCACGCACAGACATAGACGAGTG
CGTTCTCTGTCCAATTATAAGCGAGTTACCTCTTCTTATCTAGCCCTGAT
GCCAACGTTGGTGCCAGAAAGTTACATAAGTAGAGAGCAAACACAGACTC
ATTACATAATTCTTAGCGGCTGTCGGTAGAGCTAGATTTATATAGTCTGT
GTTGTAAACCCGTGTTTTTCTGCAACCCACAGACATAGACGAGTGCGCGC
TGCAGCTGACCAACTGTAGTCAACAGTGTGAGAACACCGCTGGGTCCTTT
AACTGTGCATGTCAGGACGGGTTCACACTGGCAGCTAACGGGATGGACTG
TGAACGTGAGTACTACTTGTTCAAGCTTCGTGATCACAGAGTCGTGGAGT
AATGTAAACTCTATATCGTATGAACGACGAATCTTTACTGAACACATTTG
CATTCTACTGTTCACAGCTGACAATCCGTGCAGTGCGGGAAACGATCCTG
GATGTGACTCAGAGTTCGGCTGGTGCATCTCTAACAGCCTCGGTACTGCA
GAGTGTGTCTGTAGGTCCGGGTTTGTGCTGTCGTCGGACAGTGTGACTTG
CGAAGGTAGGTTGTAGTTGTAGTTACTCATGATTGAAGGACTAGTATGTA
TCTGTTGTTGCGTCCATTACAGAAAGAGTGTTGAAATGCTACAACAGGGA
CAAAGAGACAACAAGAATTATTGTGTGCGTATTTTGATCCAAGAACTAGG
TTAAAGTCACAGTCATAAACATAAGTATAAGGATAGAAATCAATCTCGAT
GTCGCTAAAGTACTCGAGCGATCATTCAATGATGGGTTTTGTCTTTCTGC
AGACTATGACGAGTGTTCAGCCGGTGATCACCACTGCTCTCAGCTGTGCA
ACAACACGGCCAGTGGGTACAGCTGCTACTGTGGGGAGGGCTACTACACT
GACGAGGAGAATGACCATATATGCCTGGGTAAGGTCAAGACCCCAACTAT
TATCCCAAACGAATGTAAAGAAGAAGCTTTATTAACACAATATAAACTAC
AGTAAAGTAGGATCAACTGCAAACTACAAAATAGATTTGCATGTAGCATG
CATTTTACACATAATTATATATTAATTGAAAAAATGCAGAAATGTGATCT
ACATTAAACAGCATCGCCAGTAATGATCAAACAAAAAACAACCACCGATA
TGACCAAAAATAACACTCAGTCGTTCAAATATGTTTCCCAACAGACATCG
ATGAGTGTTTCGAGGGGACCGACAACTGCACAGACCTTGAGGTGTGTGGG
AATGACCCAGGCTCCTTCCACTGCAACTGTACACAAGACGCTGTGCTGGT
GGGAGACACCTGTGTACTAGGTAAGTTTCCCATAGCTAAAACCTTTATCA
TAGTCAGTTATCAAAGCTTTTTACCTTGTGTATTTGTATTACATAAAGGT
AAGTAAATGAAGACATCATTGTTAAATTGCTAACCCTGCAACACCGATAT
TTAGAAGTTGACATCTATTTTTAAAAACTGCGTTTCTGGCTGATCTAAGC
CACAACATACCGGCACATACTATGAAAGATGGGTGTTCTTTAATAAAATG
CTCGAGAGTCATTGCACATGAGGCCAGTGACTCAGCAGGTCTATAGCAGT
GCTCCAATTAGTATCAAGGACATTGTAGCAAAGATTCTTTGGCCGGTAAA
TAATGATTCTCTACAGACCAAACGGCCTGTCTGTCCAAATTGAAATGCGG
TTTTGATATATGAATCTTGTCGTCCACCTTCAGTGACTACCACACCAATG
ATGACTACAAAGACAACAACAGTACAGACCACCAGTCCCAGTACAACCAG
GGAACCCAGTACTACAGCAACGGCCACTACTACTCCAACCACAATCAGTA
CTACTGCTGTAGCTCCATCTACAGCTGAAACCACTCTTTCTCTAACTACT
CTGCCTCGAACCACCACCATCACTACCACTACTGTAGCGCCATCCACTAC
TGAAACCACTTCCCCTCAAACTACAAAATTCTCCACTACCATCGATTCTA
CAACCACTACCACAGTCACCACTCTTCCTCCAACTACCACTCTGTCTCCA
ACCACTACCATCACTACTTCCACTGTAGCTCCCCCCACCACTAAAACCAC
TACATCAAGGACTTCCCCGGAAAGTACCACACTTTCCCCGACCACTAATT
CCCCAACTACTACCACAATCAGCACTCTTCCTGCAACTACTACCACTACT
ACTAACGAAGTCCCCTCTACTGTTGAAACCACTACTTCAGATTCTTTCCC
TCAAAGTACCATGAGTACTACTCTACAGCGGACTACTACCTCTAAAACTA
CTAACTCCCCAACCACCACCACCATAACTACGACTTCAGCCCCTTCAACT
ACTGATACCACTAAATCCAACTCGTCTCCTCAAACCACTAGTACTACAGA
TTCCACAACCTTAAGCACAACTAACCCTCCAACAACCACCACCACTCAGA
AAACTGTAGTTACTTCCACTAATCCAACCACTGCGCCTACGTCTTCCCCC
AAAACCACGGCAAGCACAACTTCCATGCTTACAACAACCACTGTGCAAAC
TTCTCCCCGTCAAACTACCAAAACCACCGATGCAACACTTTTCCCAACCT
CTATTAAACCTGAAGCCACCACCTCTCCTACTACCCCTACAACTAACGCT
CAGTCGACTTCTGCATCTCCAAGCACTACAACAACCTCTCCCCCTCAAAC
CACCCAAACCAGCTCGGCCACTACGTCCCCAGCCACTATCACAGAGCCTA
TGAAATCGACTACAACAACTACCACTCCTCAATCTGAAGCTACTACTAGT
TACCAAGCGCCTGCTACCACTTCCCCCCAACCTCCGAATACGCTGACAGA
GGATCCTTCAGCTTTGAGGCCGCATGAACAAAACACCTTGGTTCTGACAA
TAACCATGACAACAGAAGAGGTAAAATCTTTTTTCAGAGTTGTAAGATAT
AAGTACACCGTACCTTAAGCACCCCTCTCACTGTACCCGCGGCACGCTGG
CGGCGTCGCTGCGGCCGATCGAATCGACAAAGCACTCAACGAATTTCATC
GACAAAAAAAACGAATTTTTTTTTCAAGCTTTATGTGTTTTGTTGTCTTT
TGGGTCATACTTGTACGTTTTGAATGATATTCCCATTATGAAGTCAATGG
TAACACAAATCCAGTTTAAGACGCAGCCAGCGTGCCGCGGGTCCAGTGAG
AGGGGACTTAACCATAACCCCAACCATGCACTGATCCTTGAAAGATTCCA
TTATAAGGATATCAAATTTTTTTTTCTTTGCAAGACAAAGTAAAGATAAC
ACATGTTTAATACATACCCAGTCGAAATTTGCTCAATGTATCTCAAGAAA
AGGTGAAACACCTTATAAAAATATTGATGTTTAATGGTAGGCTTTATATA
TTCACTATATTATGCTCTTTCGTGATCATCTAAAAGAAACTATGATCTTA
TACAAGCAATTCCGGGCCACCTCTCCCAATACTAAACGTACCTCTTATCC
TCTTCTGATAGTTCACTGCTGAGGTCAAGATGAACTTCAAGCACAGGGTT
GCTGAGA Coding sequence (CDS) from alignment at Sc0000066:1309201..1313307- >transcript:BL97194_cuf1 ID=transcript:BL97194_cuf1|Name=transcript:BL97194_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1821bp|location=Sequence derived from alignment at Sc0000066:1309201..1313307- (Branchiostoma lanceolatum)
GAGAACTACCCCGGAACCTTCATCTGCTCCTGTGACCAGGGGTTCGAGCT
CGCAGAGGACAAAGTCTCGTGCCAAGACATAGACGAGTGCGCGCTGCAGC
TGACCAACTGTAGTCAACAGTGTGAGAACACCGCTGGGTCCTTTAACTGT
GCATGTCAGGACGGGTTCACACTGGCAGCTAACGGGATGGACTGTGAACC
TGACAATCCGTGCAGTGCGGGAAACGATCCTGGATGTGACTCAGAGTTCG
GCTGGTGCATCTCTAACAGCCTCGGTACTGCAGAGTGTGTCTGTAGGTCC
GGGTTTGTGCTGTCGTCGGACAGTGTGACTTGCGAAGACTATGACGAGTG
TTCAGCCGGTGATCACCACTGCTCTCAGCTGTGCAACAACACGGCCAGTG
GGTACAGCTGCTACTGTGGGGAGGGCTACTACACTGACGAGGAGAATGAC
CATATATGCCTGGACATCGATGAGTGTTTCGAGGGGACCGACAACTGCAC
AGACCTTGAGGTGTGTGGGAATGACCCAGGCTCCTTCCACTGCAACTGTA
CACAAGACGCTGTGCTGGTGGGAGACACCTGTGTACTAGTGACTACCACA
CCAATGATGACTACAAAGACAACAACAGTACAGACCACCAGTCCCAGTAC
AACCAGGGAACCCAGTACTACAGCAACGGCCACTACTACTCCAACCACAA
TCAGTACTACTGCTGTAGCTCCATCTACAGCTGAAACCACTCTTTCTCTA
ACTACTCTGCCTCGAACCACCACCATCACTACCACTACTGTAGCGCCATC
CACTACTGAAACCACTTCCCCTCAAACTACAAAATTCTCCACTACCATCG
ATTCTACAACCACTACCACAGTCACCACTCTTCCTCCAACTACCACTCTG
TCTCCAACCACTACCATCACTACTTCCACTGTAGCTCCCCCCACCACTAA
AACCACTACATCAAGGACTTCCCCGGAAAGTACCACACTTTCCCCGACCA
CTAATTCCCCAACTACTACCACAATCAGCACTCTTCCTGCAACTACTACC
ACTACTACTAACGAAGTCCCCTCTACTGTTGAAACCACTACTTCAGATTC
TTTCCCTCAAAGTACCATGAGTACTACTCTACAGCGGACTACTACCTCTA
AAACTACTAACTCCCCAACCACCACCACCATAACTACGACTTCAGCCCCT
TCAACTACTGATACCACTAAATCCAACTCGTCTCCTCAAACCACTAGTAC
TACAGATTCCACAACCTTAAGCACAACTAACCCTCCAACAACCACCACCA
CTCAGAAAACTGTAGTTACTTCCACTAATCCAACCACTGCGCCTACGTCT
TCCCCCAAAACCACGGCAAGCACAACTTCCATGCTTACAACAACCACTGT
GCAAACTTCTCCCCGTCAAACTACCAAAACCACCGATGCAACACTTTTCC
CAACCTCTATTAAACCTGAAGCCACCACCTCTCCTACTACCCCTACAACT
AACGCTCAGTCGACTTCTGCATCTCCAAGCACTACAACAACCTCTCCCCC
TCAAACCACCCAAACCAGCTCGGCCACTACGTCCCCAGCCACTATCACAG
AGCCTATGAAATCGACTACAACAACTACCACTCCTCAATCTGAAGCTACT
ACTAGTTACCAAGCGCCTGCTACCACTTCCCCCCAACCTCCGAATACGCT
GACAGAGGATCCTTCAGCTTTGAGGCCGCATGAACAAAACACCTTGGTTC
TGACAATAACCATGACAACAGAAGAGTTCACTGCTGAGGTCAAGATGAAC
TTCAAGCACAGGGTTGCTGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000066 | genome | Sc0000066:1309201..1313307 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97194_cuf1 |
| Biotype | protein_coding |
|
