|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97196_cuf3 >transcript:BL97196_cuf3-protein ID=transcript:BL97196_cuf3-protein|Name=transcript:BL97196_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=488bp
GNGGCEHFCTNVPGGRECSCRRNYRLVGEQICRDDDMYPYGEEAGEVPRR
WDFSTCNEESLPPEGFRFFGRRHHQIHICDNGIVSFDRINRPRNPTLIQN
TFGFRTAAVLAPFLARSNAELLDNLPEAERTKIFYSVYERGDGNAATDGV
LQRARDDGRSTPGYYSPTYEPVWALVVTWTRVPPDCSTYLGGVCPRDHDE
LPVNDFQLAISTDGTLSYATFVYPTMKLEWVSTDEAKEGGTRKCPKSDGS
VAVGGYSAGDGTGPYPYTPATNASLVYRNRDFSGQDCVGNRFPSWRDVTM
RNLWRINGGNWKFALQPQDNTAVPDSAVVGCSQWMRQQTVEDPTQLLGYG
ALPPVFSCPCSAEQAYNDPTYTVHSHQFSQSRFCGRSRRRVHTRESPDSE
KLIMSRTCCYSYAYWWRQWTGSWRWRYVGWPWYWRRYRLGRNRIGGGTLL
TGHAGGHLVINDQAADEAAYQSCCVGASGLRGGWYCQR Run BLAST on NCBI mRNA from alignment at Sc0000066:1317375..1322295- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97196_cuf3 ID=transcript:BL97196_cuf3|Name=transcript:BL97196_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=4921bp|location=Sequence derived from alignment at Sc0000066:1317375..1322295- (Branchiostoma lanceolatum)
GGCAACGGTGGATGTGAGCACTTTTGCACCAATGTCCCTGGCGGCCGGGA
GTGTAGTTGCAGGCGTAACTACCGTCTTGTAGGAGAGCAAATATGTCGAG
GTAGAATGACAACCTTCATACTTTCAATCTCCTCAATGTACTGCTTTTCA
TCCCTATGAGTTGGAATTAATAATCAATTGCGTTTTATGATAAAACAGCG
GGGCACATCACAGAATAAGGGATCCTTGACGAAAACAACAACAAAATCTA
ACGAAGGAAAGAGGTCAGCTTCATGAGTTAAGTCCGAATTCGAAGCCATG
TTCTAAATAAACTATAAATACTGTACTCACATTTTTAATGACGTCTTATA
ACTGTTACTCCTTAACAGATGACGACATGTATCCGTACGGAGAGGAAGCT
GGCGAGGTGCCCCGTCGATGGGACTTCTCAACCTGCAACGAAGAGTCTCT
GCCGCCAGAGGGCTTCCGGTTCTTCGGACGACGCCATCACCAGATACACG
TAAGCTGGGGATTCCCAAAAATGAGAGACTACGAAATCCTTAGATCTGTG
CGCCAGACAATGATTGCGTAAGCAAAGCAATTGTGTAATGTATCTTACAA
CTCAATGCTTCTAGATGGAACCACATACATAGTGTTACAGAATATAGAAT
TCCTTGTAACTTAAATGAACGATTAAAAGGATATCCACTTGGTTTTCTTC
AGATCTGTGACAACGGTATCGTGAGCTTTGACCGCATCAACCGTCCACGG
AACCCAACCCTGATACAGAACACCTTCGGCTTCCGCACGGCTGCAGTTCT
CGCACCCTTCCTGGCAAGGTCCAATGCTGAACGTGAGTTGATGTATACAT
TGGTGATGTAATCATATAGAAAACTAAAAAAAGAAGTACTGTTGACCAAT
GCTAAACCTAAGACTTCTTATGGGGGGGGGGGGTGAGGGTGTTATACAAT
TATCATAGAAAAAAAGTTTGTTTCGTAGTTTAATTCAGAGCTGTCACACG
ATATATATAATTAGCATATTCTAGAAGCATATTCTAGACTGCACATATTC
AGTGTTATATGATTATGCTCAAGAGAAGAAAAAAGAGGCAGGCGGGTCAG
GTTACCGAAGAGACCTCAATAGGTATCATTACTATCACTTCTCAGTTCTG
GATAACCTTCCCGAAGCCGAGAGGACGAAGATCTTCTACAGCGTTTATGA
AAGAGGCGACGGGAACGCCGCAACGGACGGAGTGCTGCAGCGGGCAAGGG
ACGACGGGAGATCAACTCCTGGATACTATTCTCCAAGTAAGTGACAATCG
CCATTATATTTTGTACACAATGGAAACGTCTACTTCTCGCCCCCCCCCTA
AAAAAAGAGCGCAAGGATGGTAATTAATATTCGGAGATACATACAGGCTA
ATTCTGCAAGTTGTGTTTATCGCGATCTTTGATGTTGAGATTCCACAGAG
GAAAAACGTTGAATTGAGAGACCGTTAATGAATTTGAAATCTCTCGGATA
TATAATTTCAAAGGGTTTGTTTTTTTCAATTAGCGCTCAATGGTCTTGAT
AACCATCGATTCTTGGTTACCAAAACGGGTTCCGTGCAATAAAAAAGGGA
CCGTCACCTTAAGTATCGTTTCATAGTAGACAACAGATATTTACTCTGAA
ATTACGTTTGACAGCGTACGAGCCGGTGTGGGCTTTAGTGGTGACGTGGA
CGCGGGTTCCTCCTGACTGCAGCACGTATCTAGGCGGGGTGTGTCCGCGG
GATCACGACGAGCTACCAGTAAGTATGCAGCAGGCGCAGTGTGTTATAAC
AAAAACATTTGGTAGATTGTCAAGCAGCTGACAGATTCTTTCTAAATCCA
TATTGGTCGATTGCAAAGAAATCTTTGCGAACATACTTCATGTGACCCAG
TACAGAGAGAGAAGGAGAGACGTAGGTATAAAATGTACTCATGATGAGTA
CGTATTACCAATCGACTTTTTTTTTTTTCAGGTGAACGACTTTCAACTGG
CCATATCGACCGACGGGACCCTCTCCTACGCTACGTTTGTTTATCCCACC
ATGAAACTGGAGTGGGTGAGCACCGGTAAGAATTTATTTTGCTTGTATAA
TATGGCAGCTGTCTGTGATGCACAATTAGAAAATAGTGGAAACCGTCGCT
TAAGATTATGAAACTAACTTGACCTCAAGAATAGATTTAGAGAAGTTGGT
CTTCATTTCTTTGTCCATCAATGATGAAGTTACTTATTGCACTACAGTCA
ATTACTTTCTTTCTGTCAGTCATATTTTGCACAATACGCACTTTTACAAG
CTTGATTCTGATTCCTGATAACCATCAAAATTGTACATTTCAGACGAAGC
AAAAGAAGGCGGGACACGTAAATGTCCGAAATCTGACGGATCCGTGGCAG
TTGGCGGCTACAGTGCCGGTGACGGAACAGGACCCTACCCCTACACTCCC
GCCACAAACGCCAGTCTAGTGTACAGAAATAGGGACTTCTCCGGACAGGA
CTGCGTTGGGAACAGATTTCCTAGTTGGAGAGATGTGACGATGAGGAATC
TGTGGCGGATAAACGGCGGTAAGTTAGATCATTTGATAGCACCAGAACCT
TTTGTGAAAGCTTTTGATGGCTAAAATGTGCATCATTAAATTCGCCTTTA
ACACCCAACTGCGATGATGTTTCGTGCTTTCGGGGATGAGCATAGTGTGT
GTTTCAAGGCTCCCCATGTTGAGTCAAAACGAAAATACAACAGCTGACCT
AATTGTATATTATCAGTCACTAAGTCTTTGTTTTGAATTTTAAATGCATC
TCTATTTATGCGATAACAGCATGCTGTCAGACAACATTGCTAGTCAGGTA
TTACGACATAGATGAAAATACTGCCCGGTCCATGTCTGAAAAACTGTATT
CCACTGTAAGGTGGTAATACCAGTTGACTAATAAAAATTCTTATGCAATA
ATTCAGTGTTCTTTTATCAACTGGAATTATCATGATTTTTGCTCTATGTA
TGCAAAGCTGGTGTGTTAATTTCAGTTTAAAGGGCCCCAATAAGGTACAT
ATTAGGCTAACATATATTTTTCTGTAGGAAACTGGAAGTTCGCCCTGCAG
CCGCAGGACAACACGGCTGTACCGGATTCGGCGGTGGTGGGGTGCTCACA
GTGGATGAGACAGCAGACAGTGGAGGATCCCACCCAGCTGCTCGGCTACG
GCGCCTTACCCCCGGTCTTCTCATGCCCCTGCTCGGCTGAGCAGGCATAC
AATGATCCAACGTAAGTAATACCTACAGGAAGATATGTTGCATATTTGTT
AGCCCTTATGTACAGCCCTCTGAGATCCGCATGGTCGGCACCATGTCTAC
TGCCTTATCATCATCATTTTAGGAACCCCTTCGCTAATTGGCTCTCGTTC
TCGTTTTCACAAGCTAGTCTTGTGGGGTGCTGGTGTCTGATGAATGCCAT
GGTTGTCTCTCCATTTTTTTTGCGATGAAGGACAAAAAAAACAGTCAATG
CCATAGTTGGAATGGCTATGTTTTGTTATCAGTTAAGAGTAAGCGAGACT
GAGTTTGAACAGCGAGGAGGGAGAAGGGAGTAACTACAGAATACTAGCAA
TGGACACGCAGTTTTTGTTTATAGCTATTTAGCTACATCATAAAATACTC
ATCAGTAATAGCGCAAGTGTTGCCAGGTTAAACCTAAACTTTACCAAGGC
GATGTACCAAATAAACCATTATTTGTCAGAAAGGTTAGGGCACGGGAATT
CCAAATAGTGCAAGTTACAGTTAGCACAACACAGAATTCTGGCAACAACC
AGTAAACTTTGACACCTTCCAGTGCCCTCCGATACATAAATGGACCTTCT
GAGCGCAGCATGCATGATTTTTTCAGTGCAAGGCTGTCATAATCAGTAGC
AGTCCACGCAAAAATAGCGAATGTAGGAGAGTATTGTTTCCGTGTCAAAG
GATGTCGGTTGTCATTGCTCATTATTTTCGATAGCCATGATATTGTGATA
CTTTGTGTGCAGGTACACAGTCCACAGCCATCAGTTCAGCCAGTCCCGGT
TCTGCGGCAGGAGCAGGCGGCGGGTTCACACGCGTGAGAGCCCAGACTCG
GAGAAACTCATCATGTCCCGGACCTGCTGCTACTCCTACGCGTACTGGTG
GCGACAATGGACAGGATCTTGGAGATGGCGATACGTGGGATGGCCTTGGT
ACTGGCGAAGATATAGGTTAGGACGAAACAGGATAGGCGGTGGAACACTT
TTGACGGGCCACGCAGGCGGCCATCTTGTAATTGTAAGTACTTGTTAGTC
TTATTTTGTGACATTACAAGCAAACTGGTTGCTCAGATTTAAATTCTTGT
GAATTGAACTTTTTTTAAGCAGCTTGTCCGCAACACCAAAGCAGCTTGTC
CGCAACACCAATGCAGGTTGTCCGCAACACCAAAGCAGCTTGTCCGCAAC
ACCAAAGCAGCTTGTCCGCAACACCAGAGCAGCTTGTCCGCAACAACAAA
GCAGCTTGTCCGCAACACCAAAGCAGCTTGTCCGCAACACCAAAGCAGAT
TAAACTAGGTTTAACTAAACTTTCGATCGCACAGGTGCAGTTGTTATTAA
GGACTGAATCCGCTACAAACGGCACGTAACCTTTTAGACACGTGTCCCAA
GACGTGAGCCAAATGTGTCAGTTACCTTCGTCTCTGTTCAGGGATTGTGG
AAAGGCCCTGATGCATAAGATTAGTGATGGGCAAATGAAACGTTAGTCCA
ATTTTCCACAGCGTCAAGATTGTTTCTACAGTCATGGATTTTTCCAACAC
TGATGAACTTTACTGATTTTATACCCTTACCTCACAGAACGACCAGGCTG
CTGACGAGGCGGCCTACCAGAGCTGCTGTGTGGGCGCCTCCGGCCTGAGG
GGCGGCTGGTACTGCCAGAGG Coding sequence (CDS) from alignment at Sc0000066:1317375..1322295- >transcript:BL97196_cuf3 ID=transcript:BL97196_cuf3|Name=transcript:BL97196_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1464bp|location=Sequence derived from alignment at Sc0000066:1317375..1322295- (Branchiostoma lanceolatum)
GGCAACGGTGGATGTGAGCACTTTTGCACCAATGTCCCTGGCGGCCGGGA
GTGTAGTTGCAGGCGTAACTACCGTCTTGTAGGAGAGCAAATATGTCGAG
ATGACGACATGTATCCGTACGGAGAGGAAGCTGGCGAGGTGCCCCGTCGA
TGGGACTTCTCAACCTGCAACGAAGAGTCTCTGCCGCCAGAGGGCTTCCG
GTTCTTCGGACGACGCCATCACCAGATACACATCTGTGACAACGGTATCG
TGAGCTTTGACCGCATCAACCGTCCACGGAACCCAACCCTGATACAGAAC
ACCTTCGGCTTCCGCACGGCTGCAGTTCTCGCACCCTTCCTGGCAAGGTC
CAATGCTGAACTTCTGGATAACCTTCCCGAAGCCGAGAGGACGAAGATCT
TCTACAGCGTTTATGAAAGAGGCGACGGGAACGCCGCAACGGACGGAGTG
CTGCAGCGGGCAAGGGACGACGGGAGATCAACTCCTGGATACTATTCTCC
AACGTACGAGCCGGTGTGGGCTTTAGTGGTGACGTGGACGCGGGTTCCTC
CTGACTGCAGCACGTATCTAGGCGGGGTGTGTCCGCGGGATCACGACGAG
CTACCAGTGAACGACTTTCAACTGGCCATATCGACCGACGGGACCCTCTC
CTACGCTACGTTTGTTTATCCCACCATGAAACTGGAGTGGGTGAGCACCG
ACGAAGCAAAAGAAGGCGGGACACGTAAATGTCCGAAATCTGACGGATCC
GTGGCAGTTGGCGGCTACAGTGCCGGTGACGGAACAGGACCCTACCCCTA
CACTCCCGCCACAAACGCCAGTCTAGTGTACAGAAATAGGGACTTCTCCG
GACAGGACTGCGTTGGGAACAGATTTCCTAGTTGGAGAGATGTGACGATG
AGGAATCTGTGGCGGATAAACGGCGGAAACTGGAAGTTCGCCCTGCAGCC
GCAGGACAACACGGCTGTACCGGATTCGGCGGTGGTGGGGTGCTCACAGT
GGATGAGACAGCAGACAGTGGAGGATCCCACCCAGCTGCTCGGCTACGGC
GCCTTACCCCCGGTCTTCTCATGCCCCTGCTCGGCTGAGCAGGCATACAA
TGATCCAACGTACACAGTCCACAGCCATCAGTTCAGCCAGTCCCGGTTCT
GCGGCAGGAGCAGGCGGCGGGTTCACACGCGTGAGAGCCCAGACTCGGAG
AAACTCATCATGTCCCGGACCTGCTGCTACTCCTACGCGTACTGGTGGCG
ACAATGGACAGGATCTTGGAGATGGCGATACGTGGGATGGCCTTGGTACT
GGCGAAGATATAGGTTAGGACGAAACAGGATAGGCGGTGGAACACTTTTG
ACGGGCCACGCAGGCGGCCATCTTGTAATTAACGACCAGGCTGCTGACGA
GGCGGCCTACCAGAGCTGCTGTGTGGGCGCCTCCGGCCTGAGGGGCGGCT
GGTACTGCCAGAGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000066 | genome | Sc0000066:1317375..1322295 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97196_cuf3 |
| Biotype | protein_coding |
|
