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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97223_cuf2 >transcript:BL97223_cuf2-protein ID=transcript:BL97223_cuf2-protein|Name=transcript:BL97223_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=371bp
EGCDSEKEFECTNGFCIDKSRRCNGIFECLDFSDEDNCLGSKCQPGEFLC
TSGECISGELRCNGSPDCPDESDEDGCVKILCHGHSFIYNAVTKTCMSCQ
HNTQGRNCEKCKPGFYGNAEVGTMEDCKQCECNGHSMDCDITGKCENCGH
NTEGEKCESCRPGFRGDATKGTAGDCAPNSPDGTDEKDADGKDADGKDAD
GKDADGKPKTCDCNGHSTECDSAGKCKNCGHNTEGDKCEKCKSGYVGDAT
KGTSTDCKASNCAALCNNHATECDIEAKACKDCKDNTEGNMCEKCKTGYT
GDPTKGTPNDCKPNQCRCNKHSDTCPDGVCQRTASTTPPECTVRPVNLAT
TARRRDKLLTTARNAPAPLGA Run BLAST on NCBI mRNA from alignment at Sc0000303:80325..89040+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97223_cuf2 ID=transcript:BL97223_cuf2|Name=transcript:BL97223_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=8716bp|location=Sequence derived from alignment at Sc0000303:80325..89040+ (Branchiostoma lanceolatum)
CAGAGGGATGCGACTCCGAGAAAGAGTTTGAATGTACCAACGGTTTCTGT
ATAGACAAGTCCCGACGGTGTAACGGAATCTTTGAGTGTCTGGACTTCTC
CGATGAAGACAACTGTCTAGGTAGGTTTCGTTTGTTTGATCGGAATGGTG
GTGACTTTATTTCGTAATCCTTTCTATTTGAGCACTTTATCCAGTGCTTT
AAACTTGCCAAACATTTAGTTCATCATCTTTTACTGTGCTTTTTTTCAAC
AAGACGAACTGTGATGATGACGAGAAATAAAAAAAACTTCCGTCACATAC
AGAGTTAATGAATTCTACACGCTTGCTTATCTTATTCTTACCTACGTGAC
AAACAATGAATAACGGCACAACTGTATGAAACATCTTACGTTTGTGATCA
CAATTCTATTTATGTTGACGCTTTCCGTTTTTAAGTTTTCGAAAGACTGA
TTTGGTATGAAGAACTGGATTACCAATATTGGACCAAGCTGTGTTTAACT
TGTAGTCCAAACACACCTGCTAATCACGCCCCAAACCAGGGAACAAATGC
GAGACACGTTTTAATCTTGTCAGCATGTTTTAGTATTTTGGCGTGTGCGT
AGGGAGTCAGGCATTCGTTATAATCTTATATATACTGTATCGCTAGGATG
TAGGTCATGTGTGAAAGTTATCTCTAAAAGCCATCCACCTGGAAAACACG
TTCTTTAAAAAAACACACAATGTGGCCACTGCTAAACGTCCTCCGAAGAC
TTTGAAATGAGACTTCTTTACGATGTAAACAATGGGATCTGATGGGAACA
AACGGACCGCATCTTGCACGTGTTTTTCATTTTGTGTTTTCTCTAACAAA
GTAGGTTTTGCTATCCTTCTGTAGGGTTTGATTCATTGTAGAGGTTAAAA
TCCACATGTACGAAGAGAAACAACTTTTCAATACGCTTCTGATCTGGTTC
ATTGGTAAATCACAGTGTATTCTTTATGATGACGTCATCCAATTTCTGCA
CTTTCTGACAATCTGCGCAAGCCTAGCATGGTTGCTATCCTAGATTACTA
CGGCCGGGGCTCAGGACTGCGTTCAGTAGTAATCTGCTCTTTTTGTTGAC
TGTTGATCAAAGATCATCAGAGATTGAGACAGACCACAGCCAGTCCAGCC
GTTGATCAAAGTCCAAGCCTTTGTGATCGGCAAATGTCACTTGATGGACA
TTCTTTATTAGCAAAAAGACAGTATTGGTGAATGCGGCTCTTCGAAGAAA
CGTTTTCAGTGTACAACTTAGGCTGGGTTAACACACACGTTTTTGAGTCG
AATCGGAGTTGACTCAGGGCTCTGCAAGGAGAACCCTGGGCCACTCAAGT
AGCGTTTTCTAGTAAAATAAATTCACTTGAGCAGCCCAAAGGACCTCACA
CACAGCCCCGAGTCGACTCCGAGAACTCGTGTGTAAATCGGGCCTTAGTA
TTACAGCCACGTAGGACATCGACAGTTGATGCATGCGGATGGTGCATTCA
TGTTATTACATATTCGCGGTACATCTTATGGTCATCAACCAGTATGATCT
TTCTCTCCCTTTCTCCATTGAATGATGAGAAAACAAATGCCCCTCAGACA
AAGATTTTCTTTAACAATAAAGTTATGTTCCCCTTCCTTTTCGGCGTCGA
AGTAGACAAGTAGCTAGGCAAGCATATTGGAGACCCTGGGTGCGATTCTA
AGCGTTCCTGGCTAGACGTTGCGTCCTTAGGAAAATATTTTAATTAGACT
TTGCCCACTTCACTTAGGTGCAAAAATACACAGTACCTGACTTCGGTTGG
GGAGGTGAAAGACGGTGGGAGGAAAGGGATAGGCCCCGCCTTCCGATACC
GTGCCCTAGACACAGTGGATAACAAAGCAACTTGCTGCCCGGCGCGGCCC
CACGGCCTAAAAAAAAAACATTATGGGACTACCTTTACCTTTACCGTTTT
ACCCCTGTCTTCTCTTATTCCCCCCTGTCAGGCTCGAAGTGCCAGCCGGG
AGAGTTCCTGTGCACGTCCGGAGAGTGTATTTCCGGAGAGCTCCGGTGTA
ACGGGTCCCCGGACTGTCCGGACGAGTCGGATGAGGACGGCTGCGGTGGG
TTCAGCGTCTTTTAATCTCCTTGAAATGTCATGGAGGTTATATTTTCAGG
AGGATTTGTCTGTGTGTCTGTTTGTTTGTTGGTGAACGTGATAACTTATT
AAGAATGGCTAAAGGGATTAGTTTCATATTTAATTTGATGGTAGCGTGTG
ACTGAGACCAGAAATTATTAGATTTTGGACCCTCCTTGGTACTGCAGTGG
AAATTCCCGTTTTGATATCTTGTGTTCTGGACATGCTATGGTCACGATCT
TTGGGCAGTAGATAGCTCTCGTTCCTTTCTTCTTATTACAGTCGTCAAAG
CTTGTGTCTTCGGGAGCGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGCG
TGCGTGCATGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTCTGTGTGTCTGTGTCAACGCGATAACGCGAGAATT
TGCGAATGCTAGGGTGGGTTTGATATTTGGTTTGTGAGTGGGTCTTGAAA
TATTATTCGTGAAATATCTACAGTTTCTTGAGATGAGAACCACATAACAG
TTATGTTATAATTGATTTATTATCTGTGTTCCCGGGACAGCCCCCTCCAA
ACTGTACCTCTTTGAAGAACATTTTTTTAATAATCAAAATACCTACTTTA
AAATCTCTACAGTGAAGATTCTATGCCACGGACATTCCTTCATCTACAAC
GCCGTTACCAAGACATGTATGGTAAGTTTTGTTTGTGTTTTTTGTTTGTT
TGTTTTTTGTTTGTTGTATTGCATACCCGGTAAACCGCCTCATGGCGTAA
CACACCAGGTTTGTACTGCAGAGAACAAGCTGCATATTTGGACGGATTCA
TTTGTTTTGATCACACCGGGAATGTCCCCTTCTTATTTCGATAATTGTGT
TGGGTTCTTTAAGCTTGTTTGAGGTATGGCTTTCCTCAAACACGGGACCT
CCGTCTCTCGCCTTATCTTAATAACAGCTAGATACATATTTTCACCTAAA
TGAAGTAATGAAAGTCGTATATAGTAACTTTTTAAAGGGCAAAAAGTCAA
CGGGGTATTTCAAGCGGTTGATACCCAGGGCCTCTAGAGTATGGGCCAAA
CACCATACCATTGGGGCACGCCGACGCCATTATATAAGTTGTATATCTCT
TTCACTGAAGTAACAATAGAACAAGACTCCCTACTGTAGCGAAATGAGTA
AGAAGTTAACTGACAATTGATAAACCCTCCCTATGTTCCAGTCCTGCCAA
CACAACACTCAGGGGCGGAACTGTGAGAAGTGTAAGCCTGGTTTCTATGG
TAACGCTGAGGTTGGGACGATGGAGGACTGCAAGCAGTGCGAGTGTAACG
GTCACTCAATGGACTGTGATATCACCGGAAAGTGTGAGGTGCGTAGTGTT
TTATCACCTTCGTAAAAAACGGAGGTATTGTTTTCGGTGAATCTGTTTTG
CTTGCCTGTCTGTCTGTGTGTCTGCCGGTGTGTGTCTGTTTGTGTTTTCC
GGATATGTTTTAGCCAGCACTCACTTTAGAAGATATGCATGGATTGAAAT
GATATTTCTTAAGTGGGCAGGTGTTAGAAAGACGAAGGGCAAGGCTGATT
AAGGGTCTCCTGGCAGCTTTTCTTGATATTGCAGAAGATGTCCGGTGGTT
CATCTTTTGTCCTGGTTTTACTTGTGCAAATTATTTGCCATGACGTTAAA
CTTATGTATCGCTCCGAGTATTGTGTTTTGTCATTGTCGGTCTATAAAGC
ACACGTGTCAGTTAAGACGAAATGTTAATATCGGCACAGTGATGGCTCAG
CTTCGGTTACAATTGGAAAAAAGGGTAGTTTCCGGGCTGTTTTTTGTAGC
CCGAACGCGTGACCCCGTAATACACCGGTTGGGCCCCGGGATGTTTTTAA
CTCGGAGTAAGAATAAACCCGGGACACGGTAACAATAGACGCCGTAACCT
AAGCGCGAGAACACCGAGATGTACTCCCTCGGTATCCGGCAGTCCACAGG
GACAAATTTGTGGCTTTGGGACCCGGCCGGGGCCGCACCCCTGCGGACAT
TAGTGGAAATGTGACCGAGGCATGACTGGACGCTTAAATTTGAAGCATAA
CTGGACGTTTGAAAAGCGATAATTTTATTTTTGGATATATAATTCTTTAT
TGTTGATGCATTGTTTACTAACGGCGTAGTTTGATGACCTGTACTGGGTA
TTTTTACCTATTGACTATAGACGGTTAATGTTTAAGCTTTAACTTCTTCC
CAGAACTGCGGTCACAACACTGAGGGAGAGAAGTGTGAGAGCTGTAGGCC
CGGGTTCCGCGGTGACGCCACCAAGGGGACGGCAGGAGACTGTGCACCCA
ACTCTCCTGACGGCACAGACGAGAAAGACGCAGACGGCAAAGACGCAGAC
GGTAAAGACGCAGACGGTAAAGACGCAGACGGTAAACCCAAAACCTGCGA
TTGCAACGGGCACTCTACAGAGTGTGACTCTGCTGGGAAATGTAAGGTTA
GTGTTTTCCGGTTAAACATAAGGGCATACCTTATGGCACTAGCAACTCAT
CTAGAAATCTATCTTACCATCCCTTCTCTCAGTTGTTTACAGAAGCCAGA
AAATTGAAAAAAAATTAAGTTGTTACCTTCGCCAAAAAGGTTATGCTTTG
AGCAATCTCTCAAATTTCTAGTCATTCTAGTCATACGCAAAATGTCTACC
ATCTGTTTGTACTGCAATTACCTATCAGAACTGCGGTCACAACACGGAGG
GCGACAAGTGTGAGAAGTGCAAGTCCGGATATGTCGGAGACGCGACTAAA
GGAACCTCTACTGACTGTAAAGCAAGCAACTGCGCCGCTTTGTGCAACAA
TCACGCTACAGAGTGCGACATAGAGGCAAAGGCTTGTAAGGTATCTGGCG
CCAGCTTTTCTGCTTGTTTCGCTTGCTTTCTAACAAACCTAGTTGGTTGA
AAACCTTTCTACGTCATCACTTTGATGTCAATTATATTTCATACGCAGAG
CCTCGCATGTAGTGTATACAATATACATTGAGGAGGACCTACTAAGCCGG
GCTGAGGTTTCCACTCCTGTGAGCGTGGTCTCTAACCAGCTGTCAGCCAA
TCAGAGAATCGGCTTTACCTAAAGAAAACACTTAGACGACTTTCTGATTG
GATGGCAGCTGGTTAGAAGTCACGCCCAAAAACAATGACTGGGCTACATA
TCAAAAAAGGGCGTTAACTTTCCCATCTTCTCTTTCTTGAAATTTGATTT
GACGGAATATCTGTTATCTGCAGGACTGCAAAGACAACACGGAAGGGAAT
ATGTGTGAGAAGTGTAAGACTGGCTACACCGGCGACCCCACCAAAGGAAC
ACCGAATGACTGCAAACGTTAGTGGCATCAGTTAGTTCTTTATGACATAA
TAGCCCTTAGGCATGTTGATTTGATTACATGAATGACATCTACGGGCGCA
TCAATTTTCGTCCAATTAGAAAAAAAGTTTTCGGTCATACTGAAAATCGT
ACAAATCAGCTGCAAAATTAGAAAATACATGCTGTAAATTGCCCAAAAAA
TATTATGGAAAACAGATACCAGTGTCGTTAAATGACAAAGTCAATTCCAA
AGTCAACGAAGAAGATATGAAAGGACAAAAATTAAGAATCTATTGCCAAT
AAGATAACCATTTTAGTGAGATATTAGGTAAACATTATATCGTCTTATCA
ACACTGAGGCTCCGGGAAGTTGGTGATAATTGTTTAATATATGTATGAAT
TAAAATATCATTTTGTTACAATGCCACGTAAGTATTGAAACGAGAAGATA
TATCTGAAACGTCAGCGTCTGCTTAAACGTCATCCAATTTCCGGGAGATC
GCAACTAAGTCACTCAGATAGTGAATATGAATGTGTGCTGACATGGCCCC
GTATCGTTAACATACTGTGCAGTTATGTAGTGTTTTACTAACACTTATTG
TCACCATCCTTTAATAGCCAACCAGTGTCGCTGCAACAAACACTCCGATA
CCTGTCCCGATGGGGTGTGCCAGGTTAGTCTGAACTAGCTATGTATGTCA
AACATCAAACTGCTCTTTCTGCCAACTGTACATGTTGTAATCATTGATTT
CATGTTGAAACTGTATCATTCTTTGTCCATGAACAACCAATCTCCAGTGC
ATTTATTTTGCTAATTAATCCAATATCGATCAAACGGACCCCTACGGCCA
ACGATGTTGCTGTTGTTCAAGTACCTACCGTTGGTTTGTGGTCATTAGCC
ATTGTTGCTCCGTGAAGGAGGTCAGTGACCTATTGTGGTTGGTTATGTCC
GTAAGTCCCTTTGCTGCATTCGTATGTAGTTTGGCATGTCACCACTGCTA
GTGTACGAGATATGATGCAGTTTTCATAGGTAATGTAATATTACAAACGA
CACCTTCATCTTGAGGGTTCGGCATAGTCTCCATACCTGTTGTAAAGCAT
TTTTATGTCATGTGCACATGCAGGACTGCCAGCACCACACCACCGGAGTG
TACTGTGAGACCTGTGAACCTGGCTACTACGGCAAGGCGACGGGACAAAC
TCCTAACGACTGCAAGAAATGCCCCTGCTCCCCGTAAGTAACACTTCGAA
TAGAAGTAGAAAACAACTATTTCAACATGTCATAGTGTACTTGCGTAATC
TCCAAGCAGATGTTAGAATCCGGCTTACTCGCAGCCTGCATTCGCCGGGG
ACGAATCGTTTGAAAAAGTGCAATATTAGACACGCGTGCTATACGCGCTA
AACACTGAGAATAAGAGATGGATCGATCTGTACATCTGCTTGGACAACGT
CTTACCGCCCGTCTACGAAATCATGCGTGTTCCCGCCAGATTATGCTATC
TCGCGAGAGCAGTTCTCAAAATGGCGCCGGGGTTTGAAAAGGGGTCTATT
CTGTCAATATGAGCCCAGATCAGAGTGTACGTCCAAGAGTGCCGACTGTA
ATGTAAAACTTGCTGAAGATCTCACCCCGTACTCCTCCCGACATCATCTT
TGAAAAAATGGTTGCAAGGCCCAAAACGCTTTCAAAATTAAAACAAAGGA
GAAGGAAGCTGGCATACTAGATTACAAACGAACACACACGCATAACATAC
AAACAAACAAGGAAACAAATATTAGCATGACAGTTCATCTTTGTTGGTAG
TTAAAACATCACCCAGACCTTTAACTTTGTTAATTAAAGAAAAAGATGAA
TATAAGAACTTGGTCCTAGCACAAAATATTGTTCTGCGCTATAAAGAAAC
AGATATCATATTTAATGTCCGTATCTTTTCCAGTCGGAGCATAATGTGTA
TAGAAGTGCCCGGGGAAGCCCAGCCGAAGTGTATGGGCTGTGAGGATGGC
TATTTGGGAGAAAAGTGCGACAAGTAAGTGATGTTTGTACTATTTTTCCA
ATCCACAGCGTGGTGACAACATCCCGAACCTTTTCCGGCTTGTACCTACA
TTTGTACTCTGTAAATCTCCAGGTAACATTGACTGTCCACAAGCAAATGC
TTCAGGCATCGTTTGCTGTGAGACAATAGGAATGTCAGAACATAGGAGTG
TCAGAATATAGGGGTGTGGGAACATGGGGGCGTCAGAATACAGGGGCGTG
GGAACATAGGGGTGTAAGAACATTGTGGTGTCGGAACATAGGGGTGTAAG
AACATGGGATGCAAGATCATAGGGATGCCGGAACATAGGGGTGTCGAAAA
TAAAGGTGTCGGAACATATAGGGGTTCGGAACATAGGGGTGTCGGAACAC
GGAACACATAGGGGCGTCGGAACATATGAGCCGGGTGTCTGAACATAATA
GGGGTGCGACCATTTGAGTAACCATGTCTGTTCTATTTTGGTTCCAGATG
CGACGGGGAGAACGGGTTCGAGGCCCTGCAGGGCGGTCCCACGGCGGCCA
ACGGCTGCTGCGTGAGGAGGGGCGTGACGGACTGCCCCTCGGGCTGACCG
TTGACTTTCAAACTTCACTGTGCAATCAGCCTTAATTTGTATCCATGACA
CAGAGTGTTGATTCCACACCGTAAATTTAAACTTTGTAACTAAAATACCA
TTAGCATTAAAACGATATAGCATTATACAAGGAGGTTAAATTTGACAACA
ACAACAGTAGCAGGTTTGAAAGTGAGCGCAATGATGTAGCTTTGTAAGCA
TCACAGGGACGTTAGTGTTCTTGTGCTCTTGATCAGCTCTTATTGAAAAA
TTGACATAAAGAAAATAAAAACATCATATGCAACATGTGGTAGAATTGTT
GTCTTTGATCTCTGTAAAACGATATCATAAGACCTGAATGTGATCTGCTG
GTAAAAATACGTGAGTGATTGATTACAGTGATACGTGAATCACTTGGTTG
AATAAAGTAGGATATCAGTAGTTGTGTTTTTTCGCCATGATATTTTCACA
TTTAGTCTGAAAAATCAGACAAAAACACAAAATTTCAAAATAAACTTCTC
AGCCTCCCAGTTCATGTTGGATCAAGGCACGTTATGTAATGTCATGCTAG
GTTATGAATGATCATGAATGCTAGAGCCAAATGATGACGACATCCAAGAT
GTCGTCGACTTTTGACGATGAAGAAAGCTTACAATGACGTAAACATTTGA
GTTTCTATGATTAATC Coding sequence (CDS) from alignment at Sc0000303:80325..89040+ >transcript:BL97223_cuf2 ID=transcript:BL97223_cuf2|Name=transcript:BL97223_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1116bp|location=Sequence derived from alignment at Sc0000303:80325..89040+ (Branchiostoma lanceolatum)
GAGGGATGCGACTCCGAGAAAGAGTTTGAATGTACCAACGGTTTCTGTAT
AGACAAGTCCCGACGGTGTAACGGAATCTTTGAGTGTCTGGACTTCTCCG
ATGAAGACAACTGTCTAGGCTCGAAGTGCCAGCCGGGAGAGTTCCTGTGC
ACGTCCGGAGAGTGTATTTCCGGAGAGCTCCGGTGTAACGGGTCCCCGGA
CTGTCCGGACGAGTCGGATGAGGACGGCTGCGTGAAGATTCTATGCCACG
GACATTCCTTCATCTACAACGCCGTTACCAAGACATGTATGTCCTGCCAA
CACAACACTCAGGGGCGGAACTGTGAGAAGTGTAAGCCTGGTTTCTATGG
TAACGCTGAGGTTGGGACGATGGAGGACTGCAAGCAGTGCGAGTGTAACG
GTCACTCAATGGACTGTGATATCACCGGAAAGTGTGAGAACTGCGGTCAC
AACACTGAGGGAGAGAAGTGTGAGAGCTGTAGGCCCGGGTTCCGCGGTGA
CGCCACCAAGGGGACGGCAGGAGACTGTGCACCCAACTCTCCTGACGGCA
CAGACGAGAAAGACGCAGACGGCAAAGACGCAGACGGTAAAGACGCAGAC
GGTAAAGACGCAGACGGTAAACCCAAAACCTGCGATTGCAACGGGCACTC
TACAGAGTGTGACTCTGCTGGGAAATGTAAGAACTGCGGTCACAACACGG
AGGGCGACAAGTGTGAGAAGTGCAAGTCCGGATATGTCGGAGACGCGACT
AAAGGAACCTCTACTGACTGTAAAGCAAGCAACTGCGCCGCTTTGTGCAA
CAATCACGCTACAGAGTGCGACATAGAGGCAAAGGCTTGTAAGGACTGCA
AAGACAACACGGAAGGGAATATGTGTGAGAAGTGTAAGACTGGCTACACC
GGCGACCCCACCAAAGGAACACCGAATGACTGCAAACCCAACCAGTGTCG
CTGCAACAAACACTCCGATACCTGTCCCGATGGGGTGTGCCAGAGGACTG
CCAGCACCACACCACCGGAGTGTACTGTGAGACCTGTGAACCTGGCTACT
ACGGCAAGGCGACGGGACAAACTCCTAACGACTGCAAGAAATGCCCCTGC
TCCCCTCGGAGCATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000303 | genome | Sc0000303:80325..89040 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97223_cuf2 |
| Biotype | protein_coding |
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