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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97239_cuf1 >transcript:BL97239_cuf1-protein ID=transcript:BL97239_cuf1-protein|Name=transcript:BL97239_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=295bp
AMLTVLAIPLAKFVCETKADFGLRLEAGRTLNVLLQGITSAIRHEYKASP
GMKAVMKNLATLIQGAGDFELQITTLEALFRMTSRADRGSVAREWFPDPA
VNSAMLHIRDSDFETDCRKFLNVLNKSLGPKRSVFSFPCKGAYLGTEKLQ
QPTDENLTDFWVDFNTSSHSISLFVVDKNNADQDEADGWETVVIKSPDVR
FYMLSESLGDIRLEMVLLRRACDISEVCLESNRDKTAIFVLKKSPDIPRA
LDLSLGKDKERQKPHVSMAGTPVRFSTYAAADSSMTGEEEIHSRS Run BLAST on NCBI mRNA from alignment at Sc0000002:6218072..6225501+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97239_cuf1 ID=transcript:BL97239_cuf1|Name=transcript:BL97239_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=7430bp|location=Sequence derived from alignment at Sc0000002:6218072..6225501+ (Branchiostoma lanceolatum)
AGCAATGTTAACTGTTCTGGCAATCCCCCTGGCCAAGTTTGTGTGTGAGA
CCAAGGCAGATTTTGGTCTGAGGCTTGAGGTATGTCCAGTTGTTTGTATA
ATGCATTGTGTTCTGCAGTTAACATTAAAGTAGTCTTATGTGACTGGTGT
CATCATGCTCATGTTTTTCTATTCAAAAGCTATAACAAGCTTGGTGGATT
CCACTTTTCTTGTTTCTATTTTCCCTATGCTAGAAGCCCTTTTGAAAACA
TTATTTTACAGTCACAATGTCGCAATGTTGCAGGTATAGAGATAAAATCC
TTTTACCAAAAATGGTGAGTAAAGAACTTTCAGATGATTAATCAGATAAC
TCCTACAAATTCAGGAAGAACATATATTAGATAAAGGACATTACTTGAAA
AAAATTGTTGACATATTAAAAGTCAAGTGTTGTACTTTAAAGTTGATGAA
AGCCTTTTAAATGTATGGACCTTATGATTTTTCTTTATTGGTATATTTGT
TTGTTTGTAGGCAGGTAGAACACTAAATGTCCTTCTCCAAGGCATCACCT
CTGCCATCCGACATGAGTACAAGGCCTCTCCAGGGATGAAGGCTGTGATG
TGAGTATTTGGGATTTACTAAATAACATGCTTAGCCTAGCATTTCTTTGA
ATTGTCTGCAAATATAATGACTACATGACAAACCTTTGGTACATACTGTA
CACTGTAATTTGAAAATGATGCATGTATAGGAATTGTTCCACATCTGGCA
TGCATTGATTGAGATGATGAAAAAGTTTTCAGATATTTATATCTGAGGGC
TTTCATGTCGTCATGCAGGTATCTTCTTTACTGACACACTCTACAGCACC
TGTGTTGGTACTATCTGCATTTCGAGGTCTGCCTCTTAATTGAGGAAAGG
GATCTGCCTTTTGTGTCTTCTTGCCTCCCCTATGATAAACAAGGGATCAG
CAAATTGGACGTGATGACATTCCACTTAGATTTTCACACCTCGCTCCGAT
GCAACATTAAAGAATTCAGTCCTGATCTGACTGAGGTATCTGTAATAATG
TTGTAAGGTATCAGTCGCTCGTGCAATGGTAAACAGTGCTATCTATTGCT
CCATTGAATATCAATGATGCCCGCATGAGTTTTAAAATTGCATGACGACA
GTGCCAACTTAAACAGTGTTTGGAAAAGTTTTCAAATATATGTAAAAAGT
GTTCTGTGGAGAGAGTTAAATGATGCTGATGGTAGCAGTTGATGCAAGAA
TGACTGGAGAACCAAATAAAAAATAAAGGGGCTAAGAGAAGGCACAATTT
TGATTTATCTTCTCTAGTAGATGAAAAAAACGCCCCACACTTCACATGCC
TTGGTTCAATGATCAGTTAACTCTTGCATACTACACAGTCTGACTAATTT
TCATGTACCATGACGACTTAATTGCTGTAGTTTTAAGGGTTATTGGAAAT
AAAAAAAGAAGCTTTCTAAGATGTTTTCCTTGCCTAAAGTTCTTGTTTTC
AAGACAGGAAATCCAACAAATCTGCGGCAAGCCTGCTTAAAGAAAGACAA
CAGCTAACACAACCGTGATGCAGCAAATCTGGTTTCAAAGCATGAACCCT
TGCTTGTCTTGGACTCACTGCCCTTTCCCTGTAATCCCATGTAATCCCCC
AAACAGGCAATATCTGGAGCCAATGGCCTGTGTGATCTGGAGAATGAAGA
GGTTAATCTATAGCTTACAAGATAACGTCTTACACCAATAATGTCATCAC
TTACCTGAAATCCCATTAGTTTGTTCACTTATAACAGAAAAAAAGCTGTG
ATCCGCTGAATAAACACGATTCAGGGTCAGGAACGCTGCTGGGAGTGATC
CATGACTAGCATTTTGCGAAAGTTGACCTTTCATAATCTTGCAGCACAAA
GCTTTGATCCTTTTGTCTGCATGGGAATCTGACAGTCAGATTAGCTGTGT
CGACTGTCAAATGGCAGAGCAATGCCAGTGGATCCAACGCAAATTCGAAT
GCATTGCTCTGATGAACTGTAAAAAGGGCTTATATCTTTCCAGTTGTCAA
GAAGTAAAATGAAATGAAAGTTTCCAGCTTTTCAAGTTTGGCGTGAGGAT
AAAATTTCCTTTCAACCTTGATGTTACCTTGTCCTGGCGGCCTACTTTAA
ACTGACCTCGAACTTTACATCTTACCACAGATCTAGAAGCTTTCCAAGGG
TAAGTCAGATGCCAAACATTTAATTACTTCACCGCAATTAGATTTAAAAA
ACGAGAGTCCAGCTATATCCATTTCCCAAACCATTTAAAGGGTTGGGGCG
AATTGTTTACAGAACTGAAATGATCCGTCATTCTGGATGGCACATCGGTT
TCCACACCTGTCTCACCTGTTCAAGATTCCGACACAGGTGTACTCCTGAA
GCAGCGTCCGCTTTTCAAACCCACTATTTGCCCAGGGGATCATCCCGGGT
CTTAGCTCATCTGTGAAAACATGATAGGACCTTTAATCCCTGTTTGTAGG
GTTTCACACGTGCCATACAAACGTAAGTCCTCGTTAAACCAAAACACGGG
ATGTTTATCACGCATCTGTGTACAAAATGAGGCTTAGGGAGCTAAACAAA
CAGGGAACCTATTGGCGCATCGTGTAGTCTTTGCGCAGCTCGCTTGTTCC
TGAAAAGTGCAAGGTAATCTCTCAGTAACCATATCATGATGTAAAGAGCT
TGTTCTCTCAAAGCTTTAGAGCAAACTGAGCTTAACATTTCACTGACAAC
AGCCTTCAATGCCTTCATTTTTATTGGAAGTCTTCTTTTACTGACTGAGA
AATTGTAGGTCTTTCTGTTCTTCAAAATTTGTGATCATAAAGATAAAAGC
TGATCTACTGAGTAAATCTGATGTGAATTCCATCTTAGTTTGTTCCTTCT
TTATAGGTCTGATTAACCGGTTGTTCTATGGTCGATCAATGTTATACCCA
TATGTGTGTCAGCCAATATTCCAAAATCCTCCTAATAAGGCATGCCTAAA
AGTAGCTATTGCACAAAAGAAAAAAATGTAGTACTGAGAAATTCCTCAAA
CTTCTGTTCTGACTGCTGACTCCAGTGCCCATCTAGGCCAACGTCCTTCG
GTAAACTTTGCTAAGTAATTGCTCTTGTCATGTTTTCATCCCCTTATTTA
TTATCTTTTAGCTCAACTTTCCATGTAGCATCACCGTGTAATGAACGACA
TCTTTTTCATCTTGTGAAAAAACCTAACAGGACTCTGTNCAGGACCCTGT
CATGACCATGACAGCTTATTCTGTGCTCTCCTTCTTTTGTAGGAAGAACC
TAGCGACACTCATCCAGGGTGCAGGAGGTAAGAAGTGTGCAGATTAGGCA
CTTGCAGTGTAGTTGCTTGTTTGGGGAAACTTGAGTAACAATGTTGAAGT
CCAGTATTGCTTTGCAGATGGTGTATCTATTAAGACTGTAGTAGTAGTAG
GCATTCATCAGTCTCGCAAGACTATGAAATATAGTATAGATTCTACACAA
TGTACTATCATTTAGATAAGACAAAATAAAAATTGATCTGGGAATCTTCG
AGCTGCATGTACAATGTACATGTCATGTACCTTTGCATGAAAAGGCTACT
GCTTAAAATGAAGACAGTATGAAGGGGAAAGTTAAATTTGTTTGTTGACA
TTTATGATAGGAATTATACTCTCTAGATCTTTTTCTGAAATTTCCTTGTG
AGACTTAAGGTATGTTCAATCTAAAATGTCCGAAGACATTTTCATCACAC
AGTATGAATGCATAACAAAATGCAACACATTATGTTCCACCATACTATTG
ACTTGTCTCTGCCATTTTCCCCACAACTTTCCTTACTTTGTTGTGGTATG
TTGAGCCCTCTGTAAAGCCAACCCCTCCTGCGGTTTCTTTTCTGGTTGAG
AAAGATTACAGTGGATGATGGACATATGAATCCAGCATTTGTTCTGTTAG
GAGAATTAAGGGAAGATTAGGGAAGGCCGGGATAAAATGGATTTGCAAGA
TATATCGTGGATTATGTATTTAGAACAGAAGAAAAATGTGACAAAAGTAC
TGCATATGAAATAGATGACAATTTCTGATTAAAAACAAGGGACAACAAAG
AAAAGTTTGAAGGCCTCTATTGCAGGGTCTAAATGAACAAAATTCAATGT
TTTGGTCATTTGTTTCCAGCATAAGTTTAATCTATTTTACCACACTGCAA
AGTATTCACAGAGTACAAAATTAATGTGCTGTCATTGCACAATACTGGTA
CCAACAAACTAATGATTATCTGACCCAAGAGCTGATATATAGCTTGTTCA
TAATTGTGCTTTTGAGCCATCAAGAAATGATATACAACGCAAAATTATAC
ATCAATCTCCAATTGTTGTAATTTCTAGATTTTGAGCTCCAGATCACCAC
CCTTGAAGCTCTATTCCGCATGACGAGTAGGGCTGACCGTGGGTCCGTAG
CGAGGGAGTGGTTTCCAGACCCAGCCGTCAACAGTGCCATGCTGCACATC
AGGGACTCTGACTTTGAAACTGTGAGTCTCAGAATGTGCTGTATATTCTT
AACCTGCTCCCTGCTGCCTAACTCTGTAACCAATAGAGAATGGGGTGCCA
AATGGTTACTTCAGTGTGCTTAAGATTAATTTGAGTTCCTACTCATTAGA
TGCCTATAGATTTACATGTAATAGCAAAATATAGTATGAAACTGATTTTG
TTCATGAGTGATAAACATCCACTATAAAACAGTAAATTTATTTGACATTA
AAAGATTTGAACTTAATTTTTAGTTAAGTATGGCTGTTAGAACTGTATGG
AAAATCTTAGACCATTGCTTTGTGATAAAGATAATCATGGCTTTTCTGTA
ACATAATTCAGTGTATAATGTATTCCTCATTATGTTCTTCCAGGATTGCC
GTAAATTCCTGAATGTACTAAACAAGTCCCTGGGACCAAAGCGAAGGTAC
TTTTTATTGTATATTAGTACTACTTAAGAATTAATCAATCTAAACTATAT
ATCTTTTACCTCATATATACATACATGTAATTTAAGTTCCAACAGTTCAT
TAGATATCAACATTTATAGTTAACATACTGTTGAAAATCTATAAACAAAA
TGCTTTTCTTTGCAGTGTATTTTCCTTCCCATGCAAAGGGGCCTACTTAG
GAACTGAAAAGGTATCACAGTTGTTGTAGGAATAGGATCATTCTTGTTCA
GGTTACCGTTCCACCTTAACATTAGAAGATGGGTTTGTATTGTTTATGAG
GAATTGTGCCTTTTACTGTTGATAAACAGTTTTCTGTGTTCCTAGGCATA
GAGTAGTGGACAACCTCAAGTCAACCGTACTGCTCATGCCACATCTTCAG
AAAAGACACTGTAGCCGCATAGCTCCTGTTAACAACTTTATTCAACTGTT
TGCCTAGTTTTCTGTGTTCCTGTTAACCATAGTAGGACATATATATTTGT
TCTGGACTATCAACTGTCCTTGTAAAGACATCCTTGATCAGCATCTTTTT
CCTCTAAATCATGCAAACTTTGCTCTATATTATTCCAATGATCTAATTCT
GTTGCGATGATTTTTCCTAGCTTCAGCAACCCACAGACGAGAACCTGACT
GACTTCTGGGTGGACTTCAACACCTCGAGCCACAGCATTTCCCTGTTTGT
GGTGGACAAGAACAATGCAGACCAGGTATACTTCTGAGACATTGATTGCA
TTGTCTTTCGTAGAATTCCTCTGTTTGTCTGTTTTATCTAGATCTCAATT
AGTGTCACAAAAAGAACCACTGTTAGAACTTATTTCTATAAACTAAAATT
CTAGAAACTGCACAGTCTCTATAAAGATGTTGACCTCATATTTTTGAAGT
ATTTTAACCTTCTCTCTGCTGCCTAATTCTGTAGCCAATAGGAAATTAGG
TGCCAAACGGCTACTTCAGTGTGCTAAAAGTTAACAACATTTTTACATGT
TGTTCATTTTTCAAAATTGTAAGCAAACTCTGCAATTCAGGGGGATTTTT
TCCCTGCTTGTGTACGTTTGCACTTGTTGATAGTAAATAAAACATTAACA
TACTTTAAATATATCAAGGAAAATTGCTGCATTATCCTGGATGTTCTTGT
AATGATGGACCAACTCATATCTTGTGATTTCAGGATGAGGCTGATGGTTG
GGAGACGGTTGTCATCAAATCACCGGATGTGAGATTCTACATGCTGTCAG
GTAGACCAGATTATTCTCTCAACAAAATGCTTGTGGCAAACTAGTATACT
TTAAGTCAACTAAGATCATAATTTTGAAGAGATAGGGCACAAATTGAATA
CGCTTCTGCTTTTGTGCAAAGTCTCACAACTTGAATATGTATCTGCATTT
GTGTAGGGTCTCATTATATTGCATAATGAAATTGTACTTGGTAACGACAT
GTGTTTTTGTTGTTGGTAAGCATGTCTGTCTGTGGTGCTGAAACAGTATC
CAGACGACCTTGTTTTGTTTTTTCAAGTCACCTCATCAAGTTCCAGTGCC
ACTTACTCAAAAGACTAGCCTGGTAAGATCATGAAGCATTCACTTAAGAT
AAATGTAGATGATGAGTTGTCTGTGTACAATGCTTTGTCCTTTATGACCA
ATTTCTACTTCAAATTACAGAGTCTCTGGGTGACATCAGGCTGGAGATGG
TCCTACTGAGACGTGCCTGTGACATCTCAGAGGTTTGTCTAGAGTCCAAT
AGAGATAAAACTGCCATCTTTGTACTGAAGAAAAGCCCAGACATCCCTCG
TGCCCTGGATCTCAGTCTGGGAAAGGACAAGGAACGACAAAAGGTTTGTA
CAGTTACCATAATCCCATGTAGTTGTGCATGTTCATGGAAGAGATGGCAC
ACATTTTCATTTGTTCAGACCCATGTAGTACCTAGCGGCACATAGGGCAT
CAAATCTCCTTGCTGCTTGCTTGCCCTTTAACAAGCTCGAGGCACCTACT
TGAACACGGGGGCCCCATTTTAGGTCCATTCCAAAAGGCTAGTCTCCAAG
TTGGCAACTAATTGGAACCTGGAGCTCAACCGTAAGGCTGCTACCAGTTG
AGCCACAGGGACATCCTTGGCATTTACATTTTACCCGACTAAAAATCAGT
AGAATTTTAGGCTTAAAAGTAGTTGAATATGAAAGAAATGGGTACAAATG
CTTTTTCAACATATCTATATGCACATGTTTGACATATTGACTAATTTTGA
AAACAAAAAATGAACAGAGGAAAGAAACCGTATATTGAACATATAACAAG
ATATGCTTCAAAGTTCAACACTCAGTAAATTGACTGTGAGAGCTATAATA
GTCACAGCTGCTCTTGTGTCTTCTCTTTTGGCAGCCTCATGTATCGATGG
CAGGCACTCCTGTGCGATTCAGCACCTATGCTGCAGCTGACAGCTCCATG
ACGGGGGAGGAGGAAATCCATTCACGGTCA Coding sequence (CDS) from alignment at Sc0000002:6218072..6225501+ >transcript:BL97239_cuf1 ID=transcript:BL97239_cuf1|Name=transcript:BL97239_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=885bp|location=Sequence derived from alignment at Sc0000002:6218072..6225501+ (Branchiostoma lanceolatum)
GCAATGTTAACTGTTCTGGCAATCCCCCTGGCCAAGTTTGTGTGTGAGAC
CAAGGCAGATTTTGGTCTGAGGCTTGAGGCAGGTAGAACACTAAATGTCC
TTCTCCAAGGCATCACCTCTGCCATCCGACATGAGTACAAGGCCTCTCCA
GGGATGAAGGCTGTGATGAAGAACCTAGCGACACTCATCCAGGGTGCAGG
AGATTTTGAGCTCCAGATCACCACCCTTGAAGCTCTATTCCGCATGACGA
GTAGGGCTGACCGTGGGTCCGTAGCGAGGGAGTGGTTTCCAGACCCAGCC
GTCAACAGTGCCATGCTGCACATCAGGGACTCTGACTTTGAAACTGATTG
CCGTAAATTCCTGAATGTACTAAACAAGTCCCTGGGACCAAAGCGAAGTG
TATTTTCCTTCCCATGCAAAGGGGCCTACTTAGGAACTGAAAAGCTTCAG
CAACCCACAGACGAGAACCTGACTGACTTCTGGGTGGACTTCAACACCTC
GAGCCACAGCATTTCCCTGTTTGTGGTGGACAAGAACAATGCAGACCAGG
ATGAGGCTGATGGTTGGGAGACGGTTGTCATCAAATCACCGGATGTGAGA
TTCTACATGCTGTCAGAGTCTCTGGGTGACATCAGGCTGGAGATGGTCCT
ACTGAGACGTGCCTGTGACATCTCAGAGGTTTGTCTAGAGTCCAATAGAG
ATAAAACTGCCATCTTTGTACTGAAGAAAAGCCCAGACATCCCTCGTGCC
CTGGATCTCAGTCTGGGAAAGGACAAGGAACGACAAAAGCCTCATGTATC
GATGGCAGGCACTCCTGTGCGATTCAGCACCTATGCTGCAGCTGACAGCT
CCATGACGGGGGAGGAGGAAATCCATTCACGGTCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000002 | genome | Sc0000002:6218072..6225501 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97239_cuf1 |
| Biotype | protein_coding |
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