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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97250_cuf2 >transcript:BL97250_cuf2-protein ID=transcript:BL97250_cuf2-protein|Name=transcript:BL97250_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=390bp
MATGQDFTLTEEDVDNIEDDDLEKVIDLLEEYEINYDGLDTVPELKELLK
QKCREEEAAKSGLQEQETATSVMKMLIEDDKRKRGELIETCEELSRFLTN
LDEQTKEEAEANIPGYESQLRQQIENLSKGDCPILVAGETSAGKSSLLNL
LLGEEVLPYSHLSSTSVICELKNGHDKRVKVHMWQPVADGRSVVEFKLTP
DVPYHDQLAQYVHQKGDRDLPSEVKMIEIFWPIPILQGDIFIVDSPGVGE
NERMTQQVMEYIPQAFAFIYVINSANAGGVQEDRLQKLLRTLIEKKSTKE
LRAFHPKSSIFIFNKWDQVPKKEEAEVKEKMVEKLRNCWNGLDPESQVFY
LSTIQAARMMKAGAGPTEDFRQLLDGFHRLVPEGLKSRLL Run BLAST on NCBI mRNA from alignment at Sc0000002:7576195..7582625+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97250_cuf2 ID=transcript:BL97250_cuf2|Name=transcript:BL97250_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=6431bp|location=Sequence derived from alignment at Sc0000002:7576195..7582625+ (Branchiostoma lanceolatum)
CACACTGAAAGATCTACACCGAGGTCATTGACCTGTAGAACTCAAAATGG
CGACCGGGCAGGACTTCACCTTGACCGAGGAGGATGTCGACAATATCGAG
GACGACGACTTGGAGAAAGTCATCGATCTCCNGTGTGTGTGTGTGTTTTT
CAACAGGTGCGCGTATCCTTTTAGAGAACAAATTACAGGTTAAGCTGGGG
GTAATATGCATAAGTAATGATAAAAAAGTAAGGTTAAATGTAGATTTGTG
GACTAACGATGTTTCATTCCGACCCCGCAGGACAAATTACACTGAAAGAT
CTACACCGAGGTCATTGAACTGTGGAACTCAAAATGGCGACCGGGCAGGA
CTTCACCTTGACCGAGGAGGATGTCGACAATATCGAAGACGACGACTTGG
AGAAAGTAATAGATCTCCTGGAGGAGTACGAGATCAACTATGACGGGCTG
GACACCGTTCCCGAGCTCAAGGAGCTGCTCAAGCAGAAGTGCCGCGAGGA
GGAAGCGGCGAAATCGGGACTACAGGAACAGGAAACGGTGAGCTCGGAAA
ACAACCTGTGTGCCCTGGATGCCTTATCGTTATCGCAGCCTTATCAATTC
TGATAGCGCGGCAGTATTGATTTGGTTATAGGTGATTGTAAAAGAGTCAG
AGTTAGCCTGGTCGCCATTCTCCACGGGTACTAAGGTTTTTTTTTACTGG
CCCCGGTCTACTAAGAATAGCCTTATTTCTGACGGCCGGCATTTTTCATT
ACCGCCGCCCCATAGAAAGTGAAAACAACCCTGTAAAAAAATTCCCCGGT
GCGCGCTATTGAACTGGGCGGGCGGGAAACACTCCCAGCACCGCAGAAAT
AGCGGCGAGCTCATAATGGTGCGGTTACCACTTACCAGGCAGAGTCAAAG
TATGGACTTGAAGTATTGTGGTTGGGTACATGGGGCAATGCATATTTCTT
TGCAGCAGCTGCAGGGCATGCGCAAACAGAACTTCCTGAAATCAGACAAA
TACATGTTTTTTTTTACAACCTTTTAAATCACAAGCTTGTGTACTCTGCT
GCAGTTCGACGCAAGATAATGACAACTGCATTTTTCTGAAACTAGGAATA
CACTGCTTCAGGAAGAGAATAGATCAAATGCCATTTATCAGCATAAATCA
GAGGGATTATTATCCTGTACAGATATCGGATATGTCCTATATCTCGCGTA
CCTTTTCAATCGCAATTGAAATTCTGTAAATGCAGAAGTATTCGCGGTAG
TTTCATGTTCGCGGTTTTCGCGGTAAGCTCTTCGCCGCGAACTTAAAACC
ACCGCAGAGGTTATACCCTCCTACTCCCTTGTCTACTATTGTTTCAAACG
CGATCTTAAAACCACACCAAACAGTCCATTTTCTCCCCGTCGCGAAATCA
AAACCAGGCGAAGTTAATTGTATTCTTAGTATATCAGTATTTCCTCAAGT
TACGCATGCCTAATTATGAGGCATTTTTTACTATCTTTTAAACCTTATGT
CAAACCATTGATTTATCCCCGTCTTTGTTCAGGCCACGTCTGTGATGAAG
ATGTTGATAGAAGATGACAAGAGGAAGAGAGGGGAACTGATCGAGACTTG
CGAGGAACTGTCAAGGTTAGCTGCACTTTACTGATACTTACGAGCGCCAC
CTGGCAAGATGAGTTGAAGATGACAATTTGATATACTTTGCTACTGCGAA
CAAGATTTAGCAAACCATAGACGTTTTCCTAGCGTAATAAAACCTTCCTA
TACTTTAATCGAAAATTTGACCTAACGATTGACCGTGGCTTTGGAAAAGC
GGTTAAGTTTGTGAGTTTGGGATAAATCGACAAAAAATGCAACACTCTCA
ATGCCATATACATGTCGGTATGGGAGTGTCAATTTTCAGTTGATTGGGCC
GGTTGTCATAAAACAGGGCATTTGATCACAATCTTTCGAATCGTCTTCTG
CTTTTAGAGTATTGTTTTTCAGCAGCACGTTAATAACCACAACCTGAGTG
CACGTGGATCAATCGAATCTGTCCGGATATGCAGCTTGTAATTTTCAGTA
CACACCTGGTTTGTTACGCCTTGGGGCGGTGTACCGGGTATTCAATACAA
ACAAACAAACCTTCTTCCTTTACAGATTTCTGACGAACCTTGACGAACAG
ACGAAAGAAGAAGCAGAAGCGAACATTCCTGGGTACGAGAGTCAGCTGAG
GCAGCAGATAGAAAACCTGTCCAAAGGCGACTGCCCCATCCTCGTCGCTG
GTAAGTCAGATACATAGATTTGTTACAAAAGCACAACCATAACGATTCGA
CATTCAGAGTCTTCTGTTCATCATAAAAAGCTGATGATGTTTGTTTCATG
TATGTAGACCCCAGCACACATATCGAGGATAGTAGGGATGGCCCTGTGTG
CTTGGCTAAAATATGATAAGTAGCGAAGCCACATTGCACTTCAAGCTACT
TGAGAATACTTTACGTTTACTCTAGATGACAAAAGGTCTAGAGGTAAATA
TCTCTAACGTGTGACGTTTTTTTTCGTTCCTGGGATGTTACAAGCTAGCT
GCAACCGTTGATGATTTGGAACGAATGTGTCTCGCTCTAAAGCCAATTCT
TGATCCGATACAAAGTATTTCAATACATCTCTCTCTTCCTCTCTCTCCCT
CACTCCCTCTTTTCCTTCCTTTCTTTCTCTCTTTCCCTCTCTCCTCTCTC
TCTCTTTCTCTTGCCCTCCCTCTATATCTCCATCTCTCCATCTCCGTTTC
TGCATGTCTTAAGAGGCACCATAACCTTCGACTTAATGATTGAAACCTCC
CCTATCCTCCTCAGGTGAGACATCTGCGGGAAAGACCTGCTTTTAGGGGA
GGAGGTGCTGCCGTACTCACACTTGTCCCCCATTGTTTCTCCCTCTCTAT
CCCAAGGTGAGACATCTGCGGGTAAGAGCAGTCTGTTAAATCTGCTGCTG
GGGGAGGAGGTGCTGCCGTACTCACATCTGTCATCAACCTCCGTCATCTG
CGAACTGAAGAACGGCCACGACAAACGAGTGAAAGTGCACATGTACGTAT
TTCATAACAGCGAAACAGTTTCAGCTGCTGTCGTTTGTGCAGAGGGTGGT
AAAGTCTTGGTTGCTAGTGTTGATTGGATGCAGGCATCACCATCATAAGG
TGTGGCGTGAATGGTTATATTGTAGATGATATTGGTATTACTAAATGAAA
ATCATGAGATTTGTATTTCCAAATAATTTTTCGGCCAATTTACCGCAGAC
ACAGAGGATTATTTGATTACAAAACATAAGAGAGGTCAATTAAACTTTTC
CCCGTGCCTAGCTCTCGTTTCAGTCTGCTACGGTCATGAACCGTGATGGC
GGTGGGAGTTGAACTCAGTCACGTTTGGGACCGCATTCATCACACTGTAG
CAGCGACGCCTAGCTGCAGTGCCATTAAGAATCAGTCAGTATTGCCCTGA
AGAAGGTGACAGATAGTCACCGAAACGTCTGCTTATATAGAAACACTTCG
ATGTGTAGAAAAAAAACTTATCTCCTTGGTATAAACTGTTTCAACTCAGG
TGGCAGCCGGTTGCTGACGGGCGGTCTGTGGTGGAGTTTAAGCTGACCCC
GGACGTGCCGTACCATGACCAGCTGGCGCAGTACGTGCACCAGAAGGGGG
ACCGGGACCTGCCGTCGGAGGTCAAGATGATCGAGATCTTCTGGCCCATA
CCGATCCTGCAGGTGAAATTCTCACATGTTTTACATTTTTGTGAGCTGCG
TGGGGTGAGAATAGATCGTTAAGATCTTCTTTGAGAACTAACAACCGTCG
GTGAGAAATAACTTCATTTGCTTAAGTAGTACAGCTTCAGTCTTAGTTTG
AAACAGGGCTAACCCCTACACTGACCCTAACCCTAACCCTTAAATTAACC
CTTACTCTTACCCAACCCCAACACCAAACCTAACCCTAACACCAACCCTA
TAAAGGGGCTGAGTTATTTCACTGCATTCTGACATCTTCCATGCTCGCAG
GGAGACATCTTCATCGTTGACAGCCCAGGGGTGGGGGAGAACGAGAGGAT
GACGCAACAGGTCATGGAGTACATCCCACAGGCCTTTGCGTTCATCTACG
TCATCAACAGCGCCAACGCCGGAGGGGTGCAGGAGGATAGGGTGAGTTGT
CTGAAGTCGTCTGCAAGCGAATTTCTCTTATTTCCTTGTTTTTAGTACTC
TGCTTCCTTCTTTCGCGTGCTAATTCAAGGGAGACGCTCGTCTAAAGAAC
ACCATCTTTAGAATAGAATTTGCACACGCGTTTTTGAGTCGATTTTGAGT
CGGCTCAGAAAACTTGTGTGTAAAATGCGCCAATATCTGCCGGCATTTAC
CTCATTCTTAACCCTATCTAGACCGGGCTTTTTTGAGACTTCTTGGACCG
GGGGGGGGCTCTTTCGACCCCCCCTTCATAACTTCCGAACGGTATACTCT
ATCATCACCAAATTTGCAGGGAGTGATGTTCACGTGAAGTTTTATAATTC
CTGTAATTTTGGTGACGCTATGACGCAATCTGACGTTATTATGACGTCAT
CGATGTGATTTTATTGGCTAAATAGGGAATTCCCATAATATCTAAAAGTA
TTAGACAAAATAGTGCGTATTGTTGATTTAAAGGTATACCAAGACATTTG
ACGTCAGTGGTGACTAAGTTGACGTCAAATTGACGTCGAAGAATGACGTC
ATGTGTTGTTAGCGACCCCCTGGGATCCGCCATCTTGGATCGGCCATTTT
GAATTTTTTTAAAATTCATTTTTTCCATGTATGACCCCAAATAACAATCA
AAATAGATTAAAAACATTAATCTTAATGTTTCTGGCTAAGAAAATTCCAG
GTTGTGACGAATTTAAAGGCAAAAAAGCCTGTTTATACCAAAAATGATGA
TCTTGTCCGCCATCTTGGATTTTGAGCGATGACGTCATCAAATTAGCATA
ATTTATGAATATTAAATCATGACAGTTACATTAAATCACATATGATGTTA
TAGATGTAGGAAACTAGTGTGATTGAGCAATAAAACATTGGAAACAACTA
TGTTTAAATCAAAATTAGTGAAATTTGCATAAAATGCCTCTTCAGAAACC
CGTTGCCATGGCAACACGAAAAATGATAAACCTATACTTTTATCATAATA
TTGTTGCCAACTAAATTTTAGGAAAAGTCACCAAGTTTGGTTGTCCTACC
ATACGTCGTTTGGCAGTTATACGATGTCAAAGTTGGCGCGGGCACTTTTA
GCCCCCCCCCCCGGTCTAGATAGGGTTAAGCCAAAACTCACTGACATTAT
TTAGTGATAGTTTTGCTAAATCAACTATCTGTCTGCGATAGTAGCAATAT
CACAATTGAAATGATACTATAATAACCAAATACTATAATAACCAAATGAT
ATTTCTCACCTAGCTCCAAAAACTCTTACGGACTCTCATCGAAAAGAAGT
CTACGAAAGAGCTGCGAGCGTTTCACCCGAAATCCTCCATCTTCATCTTC
AACAAGTGGGACCAAGTCCCCAAGAAAGAGGAGGCGGAGGTGAAGGAGAA
GATGGTGGAGAAGTTGAGGAACTGTTGGAATGGATTGGACCCAGAGTCAC
AGGTGTTCTACTTGTCCACCATCCAGGTAAGACGATCGATGACACACTTT
ACGACAAGCAGGTAGCATACACAACGTAACAGTTATTCAAGGAACTGGAT
GGATTTTGGGATTGTAGAATCCATTAGCTTACGCAACTATTCGCGTTGCG
CATCTTGCTACCTGTATCTGTAATTATTACCTCCGTGAAATGGTAGGTAT
TGTTTTCGGTGTGTCTGTCTGTTTACTAGTCATGTTCATCGTAAAGGGAC
AGGAAGTAAAGGTCGGAGTTGTTAGAGTAACAGGAAGTGGGTAAACTATC
AACCTTGTGTGACCACGGACAGACATTCCAGGTCATGGGGTCAATGAAAG
CGCCCACTAAAGGTATTGATGTGGGTCGTCTGCCTGTAAAAAGTATTTAA
ATTCTGGCAGTATTTTTTTTAATATGCTAGTCATGTTTACCGTACAGTGG
CAAGAAGTGATAAATGGAAACATGTACTGTTACTCAAACCCGTATACGCG
TAATCAGTGAACTATGATTAAACACGACACACTAAAAACTCATGGAGGTA
TGAGATCTTCGAATTCTTATTTTTCTTGTTGTGGGTTGATTTGAATGAAC
ATTCCTACTTTAAGTGTAATTAACTAAGCACGACCAAGGAAAAAGGTGTC
ATCAACATTTACATTGTCTGTTGTGAGAGCAATGGCACAGTGGTTCACTG
TGGCCTTCCTTTTTCTTGCGCTAGGCGGCCAGAATGATGAAGGCAGGGGC
GGGGCCCACCGAGGATTTTCGGCAACTGTTGGACGGGTTTCACCGACTGG
TGCCGGAGGGGCTCAAGTCAAGACTACTGGC Coding sequence (CDS) from alignment at Sc0000002:7576195..7582625+ >transcript:BL97250_cuf2 ID=transcript:BL97250_cuf2|Name=transcript:BL97250_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1170bp|location=Sequence derived from alignment at Sc0000002:7576195..7582625+ (Branchiostoma lanceolatum)
ATGGCGACCGGGCAGGACTTCACCTTGACCGAGGAGGATGTCGACAATAT
CGAAGACGACGACTTGGAGAAAGTAATAGATCTCCTGGAGGAGTACGAGA
TCAACTATGACGGGCTGGACACCGTTCCCGAGCTCAAGGAGCTGCTCAAG
CAGAAGTGCCGCGAGGAGGAAGCGGCGAAATCGGGACTACAGGAACAGGA
AACGGCCACGTCTGTGATGAAGATGTTGATAGAAGATGACAAGAGGAAGA
GAGGGGAACTGATCGAGACTTGCGAGGAACTGTCAAGATTTCTGACGAAC
CTTGACGAACAGACGAAAGAAGAAGCAGAAGCGAACATTCCTGGGTACGA
GAGTCAGCTGAGGCAGCAGATAGAAAACCTGTCCAAAGGCGACTGCCCCA
TCCTCGTCGCTGGTGAGACATCTGCGGGTAAGAGCAGTCTGTTAAATCTG
CTGCTGGGGGAGGAGGTGCTGCCGTACTCACATCTGTCATCAACCTCCGT
CATCTGCGAACTGAAGAACGGCCACGACAAACGAGTGAAAGTGCACATGT
GGCAGCCGGTTGCTGACGGGCGGTCTGTGGTGGAGTTTAAGCTGACCCCG
GACGTGCCGTACCATGACCAGCTGGCGCAGTACGTGCACCAGAAGGGGGA
CCGGGACCTGCCGTCGGAGGTCAAGATGATCGAGATCTTCTGGCCCATAC
CGATCCTGCAGGGAGACATCTTCATCGTTGACAGCCCAGGGGTGGGGGAG
AACGAGAGGATGACGCAACAGGTCATGGAGTACATCCCACAGGCCTTTGC
GTTCATCTACGTCATCAACAGCGCCAACGCCGGAGGGGTGCAGGAGGATA
GGCTCCAAAAACTCTTACGGACTCTCATCGAAAAGAAGTCTACGAAAGAG
CTGCGAGCGTTTCACCCGAAATCCTCCATCTTCATCTTCAACAAGTGGGA
CCAAGTCCCCAAGAAAGAGGAGGCGGAGGTGAAGGAGAAGATGGTGGAGA
AGTTGAGGAACTGTTGGAATGGATTGGACCCAGAGTCACAGGTGTTCTAC
TTGTCCACCATCCAGGCGGCCAGAATGATGAAGGCAGGGGCGGGGCCCAC
CGAGGATTTTCGGCAACTGTTGGACGGGTTTCACCGACTGGTGCCGGAGG
GGCTCAAGTCAAGACTACTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000002 | genome | Sc0000002:7576195..7582625 + |
Properties
| Property Name | Value |
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| Transcript id | BL97250_cuf2 |
| Biotype | protein_coding |
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